HHsearch alignment for GI: 254780752 and conserved domain: PRK11669
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional.
Probab=97.58 E-value=0.00019 Score=48.43 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=75.8
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEE-C
Q ss_conf 116640656666117872132344433200123356653100001278874024665445652378803785266641-2
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPEN-Y 519 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N-~ 519 (817)
T Consensus 41 ~sail~D~~TG~VLy~k------------n~d~~~~pAS~TKlMTalv~le~~~~ld~~v-----~v~~~~~-~~~~~~~ 102 (308)
T PRK11669 41 GSAMVVDLNTNKVIYSS------------NPDLVVPIASITKLMTAMVVLDAKLPLDEKL-----KVDISQT-PEMKGVY 102 (308)
T ss_pred EEEEEEECCCCCEEEEE------------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE-----EEEHHHH-HHCCCCC
T ss_conf 08999999999690015------------8299848789999999999981789988769-----9767762-0006874
Q ss_pred CCCCCC-HHH----HHHHHHHHCCHHHHHHHHHCCC--CEEE----EEECCCCCCCCCCCCCCCCCCC-CEEHHHHHHHH
Q ss_conf 765442-256----6666653044022588762597--2352----1101355655567665634451-00003776743
Q gi|254780752|r 520 SKNFSG-AST----LRFGLEKSRNLMTVRLAHNMGM--TVVA----DYAENFGIYDKMLPVLPMSLGA-GETTVLRMVSA 587 (817)
Q Consensus 520 ~~~~~G-~it----l~~Al~~S~N~~~v~l~~~~G~--~~~~----~~~~~~Gi~~~~~~~~s~alG~-~~vtpl~la~a 587 (817)
T Consensus 103 s~l~~G~~~tv~dLl~~~li~S~NdAA~aLAe~i~Gs~~~Fv~~MN~kA~eLGm~~T~F~n-p~GL~~~n~sTA~DLA~L 181 (308)
T PRK11669 103 SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRYVE-PTGLSVHNVSTARDLTKL 181 (308)
T ss_pred CCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCCCEECHHHHHHH
T ss_conf 4334798888999999998746529999999970767999999999999982999888868-999898880389999999
Q ss_pred HHH
Q ss_conf 220
Q gi|254780752|r 588 YAV 590 (817)
Q Consensus 588 ya~ 590 (817)
T Consensus 182 ~~~ 184 (308)
T PRK11669 182 LIA 184 (308)
T ss_pred HHH
T ss_conf 999