HHsearch alignment for GI: 254780752 and conserved domain: TIGR03423
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=100.00 E-value=0 Score=463.29 Aligned_cols=268 Identities=31% Similarity=0.488 Sum_probs=225.9
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCC---------------------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCC
Q ss_conf 311664065666611787213234443---------------------320012335665310000127887402-4665
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSE---------------------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPA 497 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------------------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~ 497 (817)
T Consensus 248 ~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe~g~i~~~ 327 (592)
T TIGR03423 248 RGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALEEGVITPD 327 (592)
T ss_pred CEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 35699996688848999617887702303787988999874396654212011224468726899999999975999998
Q ss_pred CCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---------
Q ss_conf 44565237880378526664127654422566666653044022588762597235211013556555676---------
Q gi|254780752|r 498 SVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLP--------- 568 (817)
Q Consensus 498 t~~~D~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~--------- 568 (817)
T Consensus 328 ~~~~~~g-~~~~~~~~i--~d~~~~~~g~lt~~~~l~~SsNvg~~~ia~~lg~~~~~~~~~~fGfg~~tgidlp~E~~G~ 404 (592)
T TIGR03423 328 TRINCPG-YFQLGGRRF--RCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSGL 404 (592)
T ss_pred CEEECCC-CCCCCCCCC--CCCCCCCCCEECHHHHHHEEECHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 5896078-302598523--0478888630145544103833999789886187889999984678877689987774886
Q ss_pred -------------------CCCCCCCCC--EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -------------------656344510--00037767432201574403544666764102443013358532355666
Q gi|254780752|r 569 -------------------VLPMSLGAG--ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNY 627 (817)
Q Consensus 569 -------------------~~s~alG~~--~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~ 627 (817)
T Consensus 405 lp~~~w~~~~~~~~~~~~~~~~~siGQG~i~~TplQla~a~~~iaN~G~~~~P~lv~~i~d~~g~~~~~~~~~~------ 478 (592)
T TIGR03423 405 VPSREWKRKRFGQPWYPGDTLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQETEPEV------ 478 (592)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCC------
T ss_conf 89968976420577774423354103674315889999999988619838521899975168885664048754------
Q ss_pred CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC--CCEEHHCC-CCCCEEEEECCCCCC-----------------
Q ss_conf 6666554554675543535899999999999998734--80432105-996046760467897-----------------
Q gi|254780752|r 628 DTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH--GTATGKVR-LNRPVAGKTGTTSSY----------------- 687 (817)
Q Consensus 628 ~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~--GTg~~a~~-~~~~iaGKTGTt~~~----------------- 687 (817)
T Consensus 479 -------------~~~~~is~~ta~~v~~~m~~VV~~~~GTg~~a~~~~gy~vaGKTGTAq~~~~~~~~~~~~~~~~~~~ 545 (592)
T TIGR03423 479 -------------LPPLPISPENLDVVREGMRDVVNEPRGTARRARLGLDYKMAGKTGTAQVVSLKQGEKYDAEQIPERL 545 (592)
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf -------------5665789999999999999983289947575248999879999636762457887532555455456
Q ss_pred C-CEEEEEEC----CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 0-22798456----98799999826689827898644212179999999999748
Q gi|254780752|r 688 R-DTWFIGYT----PTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKN 737 (817)
Q Consensus 688 ~-D~WfvG~t----p~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~ 737 (817)
T Consensus 546 ~~~asFvG~~P~~~P~~~v~V~v--~~------~~~Gg~~AaPvf~~I~e~y~~~ 592 (592)
T TIGR03423 546 RDHALFVAFAPYDNPEIAVAVIV--EH------GGGGSSAAAPIARKIMDAYFLG 592 (592)
T ss_pred CCCEEEEEEEECCCCEEEEEEEE--EC------CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 77779999978789879999999--68------9951148999999999998576