Query         gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 817
No_of_seqs    233 out of 5297
Neff          7.0 
Searched_HMMs 39220
Date          Sun May 29 23:25:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780752.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG5009 MrcA Membrane carboxyp 100.0       0       0 1670.5  53.3  791    5-817     1-797 (797)
  2 PRK11636 mrcA peptidoglycan sy 100.0       0       0 1603.6  53.7  767    6-790     1-838 (850)
  3 TIGR02074 PBP_1a_fam penicilli 100.0       0       0 1462.9  36.4  637   70-737     1-700 (700)
  4 PRK09506 mrcB penicillin-bindi 100.0       0       0 1300.4  44.8  575   68-786   208-792 (839)
  5 COG0744 MrcB Membrane carboxyp 100.0       0       0 1165.7  48.3  562   39-747    42-609 (661)
  6 PRK11240 penicillin-binding pr 100.0       0       0 1156.3  45.3  562   50-782    40-616 (770)
  7 TIGR02071 PBP_1b penicillin-bi 100.0       0       0 1162.4  32.8  576   68-781   144-739 (742)
  8 TIGR02073 PBP_1c penicillin-bi 100.0       0       0  983.0  34.5  593   50-789     9-634 (786)
  9 COG4953 PbpC Membrane carboxyp 100.0       0       0  903.4  40.0  561   51-784    35-606 (733)
 10 PRK13481 glycosyltransferase;  100.0       0       0  544.5  19.1  183   68-254    77-266 (269)
 11 PRK00056 mtgA monofunctional b 100.0       0       0  489.9  18.4  225    2-240     2-226 (226)
 12 TIGR03423 pbp2_mrdA penicillin 100.0       0       0  463.3  26.5  268  440-737   248-592 (592)
 13 pfam00905 Transpeptidase Penic 100.0       0       0  468.6  17.3  258  441-732     1-296 (296)
 14 pfam00912 Transgly Transglycos 100.0       0       0  452.0  13.4  174   59-238     1-174 (174)
 15 PRK10795 penicillin-binding pr 100.0       0       0  417.1  29.2  268  440-738   270-615 (619)
 16 COG0768 FtsI Cell division pro 100.0       0       0  397.1  27.4  267  440-738   267-592 (599)
 17 TIGR02214 spoVD_pbp stage V sp 100.0       0       0  370.4  16.6  271  441-739   249-583 (660)
 18 TIGR02070 mono_pep_trsgly mono 100.0       0       0  377.5   9.8  169   70-241    54-226 (228)
 19 COG2602 Beta-lactamase class D  98.8 4.1E-08 1.1E-12   72.7   9.4  168  473-705    52-227 (254)
 20 PRK11669 pbpG D-alanyl-D-alani  97.6 0.00019 4.7E-09   48.4   5.9  131  441-590    41-184 (308)
 21 pfam00768 Peptidase_S11 D-alan  97.3  0.0036 9.1E-08   39.9  10.1  132  442-592    14-166 (241)
 22 PRK10001 D-alanyl-D-alanine ca  96.0  0.0046 1.2E-07   39.2   2.6  132  441-592    40-195 (400)
 23 COG2367 PenP Beta-lactamase cl  95.9    0.13 3.4E-06   29.5  10.8  109  439-564    63-180 (329)
 24 PRK00971 glutaminase; Provisio  95.5    0.16 4.2E-06   28.9   8.8  100  576-730   197-298 (308)
 25 PRK10793 D-alanyl-D-alanine ca  95.5  0.0059 1.5E-07   38.4   1.4  131  442-592    48-202 (403)
 26 PRK11397 dacD D-alanyl-D-alani  95.2   0.012   3E-07   36.5   2.1  136  442-592    40-194 (390)
 27 pfam04960 Glutaminase Glutamin  94.4    0.17 4.5E-06   28.7   6.5  101  576-731   175-278 (286)
 28 COG1686 DacC D-alanyl-D-alanin  94.1   0.043 1.1E-06   32.8   2.8  135  441-593    39-190 (389)
 29 PRK12356 glutaminase; Reviewed  94.1    0.19 4.8E-06   28.4   6.1  103  576-733   200-304 (319)
 30 PRK12357 glutaminase; Reviewed  93.9    0.22 5.5E-06   28.1   6.1   97  576-727   205-313 (326)
 31 PRK11113 D-alanyl-D-alanine ca  85.2    0.57 1.5E-05   25.3   2.1   62  528-592   298-378 (477)
 32 COG2066 GlsA Glutaminase [Amin  83.4     3.1   8E-05   20.4   8.3  123  554-734   173-303 (309)
 33 pfam05088 Bac_GDH Bacterial NA  80.5       4  0.0001   19.7   6.8   12  173-184   153-164 (1526)
 34 pfam06089 Asparaginase_II L-as  77.6     2.7 6.8E-05   20.8   3.3   45  439-495    14-58  (325)
 35 pfam00144 Beta-lactamase Beta-  73.3     5.5 0.00014   18.7   3.9   81  448-541    22-108 (327)
 36 TIGR02814 pfaD_fam PfaD family  69.7     4.2 0.00011   19.5   2.7   69  199-267   101-193 (449)
 37 cd04742 NPD_FabD 2-Nitropropan  67.9     6.8 0.00017   18.1   3.4   33  231-263   152-184 (418)
 38 TIGR01696 deoB phosphopentomut  62.9     4.2 0.00011   19.5   1.6   33  281-313   150-182 (404)
 39 COG1123 ATPase components of v  61.7     5.5 0.00014   18.7   2.0  194  444-706   310-506 (539)
 40 COG2027 DacB D-alanyl-D-alanin  59.3      11 0.00027   16.9   3.1   62  528-592   298-377 (470)
 41 pfam06774 consensus             57.5     8.7 0.00022   17.4   2.4   59   70-135    15-73  (97)
 42 pfam02113 Peptidase_S13 D-Ala-  54.7      12 0.00032   16.4   2.8   63  527-592   233-312 (383)
 43 PRK12361 hypothetical protein;  54.1      14 0.00036   16.0   3.1  114  176-316   182-296 (546)
 44 PRK11289 ampC beta-lactamase;   53.5      14 0.00036   16.0   3.6   14  473-486    83-96  (387)
 45 pfam00901 Orbi_VP5 Orbivirus o  50.9      16  0.0004   15.7   4.0   92   77-171     3-117 (508)
 46 TIGR02415 23BDH acetoin reduct  50.0      16 0.00041   15.7   2.8   25  549-573   117-142 (258)
 47 pfam05279 Asp-B-Hydro_N Aspart  49.4      17 0.00042   15.6   2.9   26   31-61     28-53  (232)
 48 TIGR01371 met_syn_B12ind 5-met  49.1      13 0.00034   16.2   2.2   41  693-743   705-745 (778)
 49 PRK06199 ornithine cyclodeamin  44.6      20  0.0005   15.1   2.7   26  434-459   106-131 (379)
 50 PRK06823 ornithine cyclodeamin  44.1      18 0.00045   15.3   2.3   24  434-457    78-101 (315)
 51 TIGR02928 TIGR02928 orc1/cdc6   43.0      12  0.0003   16.5   1.2   19  297-315    80-98  (383)
 52 pfam06491 DUF1094 Protein of u  41.7      22 0.00055   14.8   2.9   42   46-87     53-94  (96)
 53 PRK06046 alanine dehydrogenase  41.7      20  0.0005   15.1   2.2   26  434-459    80-105 (326)
 54 pfam02423 OCD_Mu_crystall Orni  41.1      21 0.00053   14.9   2.2   25  435-459    81-105 (312)
 55 TIGR01009 rpsC_bact ribosomal   39.6      20 0.00052   15.0   2.0   22  758-781   160-181 (217)
 56 PRK07340 ornithine cyclodeamin  39.0      23 0.00059   14.6   2.2   26  434-459    76-101 (304)
 57 PRK13748 putative mercuric red  38.6      24 0.00061   14.5   2.3   15  175-189   102-116 (561)
 58 PRK06141 ornithine cyclodeamin  38.5      24  0.0006   14.5   2.2   25  435-459    77-101 (313)
 59 TIGR01990 bPGM beta-phosphoglu  37.8     6.3 0.00016   18.3  -0.8   63  530-593    69-138 (190)
 60 COG5101 CRM1 Importin beta-rel  37.8      14 0.00036   16.0   1.0   14  186-199   360-373 (1053)
 61 TIGR02431 pcaR_pcaU beta-ketoa  37.1     5.5 0.00014   18.7  -1.2   45  189-248    15-59  (252)
 62 COG3462 Predicted membrane pro  36.3      18 0.00047   15.3   1.3   17    1-17      1-17  (117)
 63 pfam05096 Glu_cyclase_2 Glutam  35.9      23 0.00059   14.6   1.8   17  441-457   195-211 (264)
 64 PRK08618 ornithine cyclodeamin  35.6      27 0.00068   14.2   2.3   25  435-459    79-103 (325)
 65 TIGR02041 CysI sulfite reducta  35.4      12  0.0003   16.6   0.2   25  544-568   300-326 (550)
 66 PRK10622 pheA bifunctional cho  35.3      27 0.00069   14.1   5.2   54  144-203    72-135 (386)
 67 PRK05362 phosphopentomutase; P  34.6     5.9 0.00015   18.5  -1.4   33  280-312   138-170 (393)
 68 TIGR01974 NDH_I_L proton-trans  33.2      19 0.00048   15.2   1.0   16  475-490   375-392 (691)
 69 COG1124 DppF ABC-type dipeptid  32.6      30 0.00076   13.9   3.7  163  444-663    26-189 (252)
 70 PRK11267 biopolymer transport   32.5      30 0.00076   13.9   7.1   77   33-115    44-123 (141)
 71 COG1015 DeoB Phosphopentomutas  32.5      15 0.00037   15.9   0.3   34  280-313   138-171 (397)
 72 pfam09653 consensus             31.8      29 0.00075   13.9   1.8   38  281-319    12-49  (75)
 73 PTZ00318 NADH dehydrogenase; P  31.5      31 0.00079   13.7   5.4   92  220-315   146-245 (514)
 74 PRK03642 hypothetical protein;  31.5      31 0.00079   13.8   1.8   19  579-597   302-320 (432)
 75 COG0444 DppD ABC-type dipeptid  31.3      20 0.00052   15.0   0.9   29  639-667   177-206 (316)
 76 pfam09693 Phage_XkdX Phage unc  31.2      27  0.0007   14.1   1.5   21  234-254    18-38  (40)
 77 pfam05120 GvpG Gas vesicle pro  30.5      32 0.00082   13.6   2.7   28  225-252    31-58  (80)
 78 TIGR03064 sortase_srtB sortase  29.5      24  0.0006   14.5   1.0   17   87-103    84-100 (232)
 79 PRK11512 DNA-binding transcrip  28.9     5.5 0.00014   18.7  -2.3   74  170-247     7-88  (144)
 80 pfam09317 DUF1974 Domain of un  28.6      35 0.00089   13.4   4.2   25   92-116    27-51  (284)
 81 pfam09339 HTH_IclR IclR helix-  28.3     6.9 0.00018   18.1  -1.9   44  188-246     8-51  (52)
 82 KOG2263 consensus               27.7      18 0.00046   15.3   0.1   20  644-663   574-593 (765)
 83 COG1131 CcmA ABC-type multidru  27.1      37 0.00094   13.3   2.0  159  444-665    24-186 (293)
 84 PRK10893 hypothetical protein;  26.9      37 0.00095   13.2   3.9   35  476-511   121-155 (190)
 85 PRK07589 ornithine cyclodeamin  26.6      38 0.00096   13.2   2.2   27  433-459    79-105 (346)
 86 PRK09793 methyl-accepting prot  26.5      38 0.00096   13.2   3.7   26    1-26      1-26  (533)
 87 TIGR00918 2A060602 transmembra  26.4      38 0.00097   13.2   1.6  123   63-205   119-278 (1215)
 88 cd03225 ABC_cobalt_CbiO_domain  26.3      38 0.00097   13.2   2.4  161  444-667    20-186 (211)
 89 COG3823 Glutamine cyclotransfe  26.1      38 0.00098   13.1   1.9   18  441-458   196-213 (262)
 90 PRK08291 ornithine cyclodeamin  25.8      39 0.00099   13.1   2.3   24  434-457    82-105 (330)
 91 pfam06510 DUF1102 Protein of u  25.2      40   0.001   13.0   3.1   10  587-596    52-61  (183)
 92 pfam06259 DUF1023 Alpha/beta h  25.2      40   0.001   13.0   4.0   41  696-736    60-103 (177)
 93 pfam02023 SCAN SCAN domain. Th  24.4      41  0.0011   12.9   2.2   10  161-170    40-49  (93)
 94 pfam06637 PV-1 PV-1 protein (P  23.8      42  0.0011   12.9   4.0   27    6-32     22-48  (442)
 95 TIGR01169 rplA_bact ribosomal   23.8      37 0.00094   13.3   1.1   24  541-564    24-50  (227)
 96 TIGR02382 wecD_rffC TDP-D-fuco  23.6      43  0.0011   12.8   2.1   77  444-551   111-191 (201)
 97 PTZ00112 origin recognition co  23.5      43  0.0011   12.8   1.6   10  333-342   220-229 (650)
 98 KOG4499 consensus               22.8      44  0.0011   12.7   2.9   11  696-706   253-263 (310)
 99 COG4559 ABC-type hemin transpo  22.6      40   0.001   13.0   1.1   36  444-479    20-55  (259)
100 pfam10925 DUF2680 Protein of u  22.6      45  0.0011   12.7   3.3   29  224-252    14-42  (59)
101 COG4448 AnsA L-asparaginase II  22.4      45  0.0011   12.7   2.0   44  439-494    26-69  (339)
102 COG1636 Uncharacterized protei  21.9      46  0.0012   12.6   4.3   77  216-321    34-115 (204)
103 TIGR02124 hypE hydrogenase exp  21.9      20 0.00051   15.0  -0.6   69  554-677   238-314 (345)
104 pfam11084 DUF2621 Protein of u  21.8      46  0.0012   12.6   4.6   30  123-152    96-130 (141)
105 KOG0506 consensus               21.7      47  0.0012   12.6   3.0   70  573-685   368-438 (622)
106 TIGR02099 TIGR02099 conserved   21.6      47  0.0012   12.6   2.2   47    8-61      3-49  (1362)
107 pfam10758 DUF2586 Protein of u  21.6      44  0.0011   12.7   1.2   18  476-493   210-229 (363)
108 TIGR02915 PEP_resp_reg putativ  21.6      27  0.0007   14.1   0.1   44  440-483    74-142 (451)
109 TIGR03639 cas1_NMENI CRISPR-as  21.4      47  0.0012   12.6   3.4   32  161-193   123-155 (278)
110 TIGR00462 genX lysyl-tRNA synt  21.4      26 0.00065   14.3  -0.1   30   72-101    11-40  (330)
111 pfam02743 Cache_1 Cache domain  21.3      47  0.0012   12.5   2.4   12   55-66     21-32  (81)
112 PRK10418 nikD nickel transport  21.1      48  0.0012   12.5   3.8   35  444-478    22-56  (254)
113 TIGR02042 sir sulfite reductas  21.0      37 0.00095   13.2   0.7   41  275-315    86-129 (583)
114 smart00549 TAFH TAF homology.   20.9      48  0.0012   12.5   2.3   59  208-280    10-68  (92)
115 pfam06860 consensus             20.6      49  0.0012   12.4   1.8   36  143-196    24-59  (170)
116 COG3726 AhpA Uncharacterized m  20.6       6 0.00015   18.5  -3.5   61   70-139    72-134 (214)
117 TIGR02647 DNA conserved hypoth  20.3      50  0.0013   12.4   2.0   37  282-319    14-50  (77)

No 1  
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=1670.51  Aligned_cols=791  Identities=51%  Similarity=0.833  Sum_probs=740.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCHHHH
Q ss_conf             99999999999999999999999999998704698978851247788779990789496666125604641799697888
Q gi|254780752|r    5 IVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVK   84 (817)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~~l~   84 (817)
                      ++|++++++.++++++++++++++.++.++.++||+++.|++++|+.+|+||+.||++|++|+.|+|++|++++||++|+
T Consensus         1 ~~r~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~~L~~~~p~~ptrvys~dG~Li~e~g~eRR~~vpi~~iP~~li   80 (797)
T COG5009           1 MMKLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVETLKDVEPPVPTRVYSADGKLIAEYGEERRIPVPIDDIPDRLI   80 (797)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCEECCHHHCCHHHH
T ss_conf             92069999999999999999999999999731599868861127777438871588558987763243434687789999


Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCH
Q ss_conf             54543321461133873799999999998632047886776114799988887708883299999999999999866079
Q gi|254780752|r   85 YAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDK  164 (817)
Q Consensus        85 ~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK  164 (817)
                      +||||+||+|||+|+|||++||+||++.|+++   ++..|||||||||||||+||++|||+.|||||++||++||+.|||
T Consensus        81 ~AflaaED~~FY~H~GvD~~GI~RAa~~nl~~---~~~~~GaSTITQQvAkNf~Ltsertl~RKikE~~LA~~IE~~lsK  157 (797)
T COG5009          81 NAFLAAEDKRFYEHHGVDPIGIFRAAFVNLTN---GGRSQGASTITQQVAKNFFLSSERTLERKIKEALLAIRIEQSLSK  157 (797)
T ss_pred             HHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf             99987641351113896899999999999743---771677238999999885028136788899999999999976168


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999972014267433109999998735423440302712544401576433211111466789988876665420111
Q gi|254780752|r  165 EKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYIS  244 (817)
Q Consensus       165 ~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It  244 (817)
                      |||||+|||.||||.++|||.||||.||||+++||||+|||+||||||+||.|||+.||++|++|||+||+||+++||||
T Consensus       158 deILELYLNkIylG~~aYGvaAAAq~YFgKsV~eLtlaE~A~lA~LPKaPs~ynP~~~p~RA~~RRn~VL~rM~e~gyIt  237 (797)
T COG5009         158 DEILELYLNKIYLGYRAYGVAAAAQTYFGKSVNELTLAEAAMLAGLPKAPSNYNPLYNPERAKERRNYVLNRMLEEGYIT  237 (797)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             88999987777506750568899998827775334499999985267896555975588999999999999998738987


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             25688875301112445432223457156799885311001243312573289852488898999999998767654443
Q gi|254780752|r  245 QEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQND  324 (817)
Q Consensus       245 ~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~  324 (817)
                      ++||++|+++|+..+ .........|+||.|+||+|++++||++++|++||+||||||+++|.+|+++++++|.+||++|
T Consensus       238 ~~~~~~A~~epl~~~-~~~~~~~~~A~YfaE~VRqe~~~~yge~a~Y~~G~~V~TTld~~~Q~~A~~alr~gL~~yd~rh  316 (797)
T COG5009         238 QEQADEAKAEPLVAK-YHGPEIAFSAPYFAEMVRQEMIRRYGEEAAYTGGYSVYTTLDLKLQKAAQKALRNGLLDYDRRH  316 (797)
T ss_pred             HHHHHHHHCCCCCCC-CCCCCHHCCCHHHHHHHHHHHHHHHCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999852854234-4566221057689999999999983625552488469998588899999999999899999863


Q ss_pred             HHHCCHHCCCCH-HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCC
Q ss_conf             210000001211-2488778633320133555410476521440267652033443100002444234888966520011
Q gi|254780752|r  325 GFRGPIKRIDLK-KDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKE  403 (817)
Q Consensus       325 g~rg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (817)
                      |||||+.+++.. .+|...+...+.+.+.++|..+.++.........++.....           ..+..+.++|+....
T Consensus       317 g~Rgp~~~i~~~~~~~~~~~~~~~~l~~~~~~~~AvV~~~~~~~a~i~~~~~~~-----------~~~~~~~m~wa~~~~  385 (797)
T COG5009         317 GYRGPEAHIELSGEDWWDELAISDTLSDVGELLPAVVLSVAKSGAKIGLADGSK-----------VTLSMEAMRWARRLL  385 (797)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCC-----------CCCCHHHHHHHHHHC
T ss_conf             767864544655541054665422010366613889998536776698205640-----------134387754454303


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             2233321000013646310123566-515775225553116640656666117872132344433200123356653100
Q gi|254780752|r  404 QTTEETSENRNVLSLGDVIYVEHIN-EGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFK  482 (817)
Q Consensus       404 ~~~~~~~~~~~~l~~gd~i~i~~~~-~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~K  482 (817)
                      ....   ...+.++.||+||+++.. +.|+|.|+|++|||+|+|||+||+|+|||||++|..|+||||||+.|||||+||
T Consensus       386 ~~~~---~~~~~l~~G~~i~V~~~~~~~~~l~QiP~v~gAlVsmdp~tG~I~AlVGGfsf~~SkFNRATQA~rQPGSsfK  462 (797)
T COG5009         386 SDNK---SPEDVLKPGDVIYVRKNGGGGWRLRQIPEVNGALVSLDPKTGAILALVGGFSFAQSKFNRATQALRQPGSSFK  462 (797)
T ss_pred             CCCC---CCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf             3556---7333468888899997788862513066555626997079870899863634322244477776417985212


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCEEEEECCCC--EEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             001278874024665445652378803785--266641276544225666666530440225887625972352110135
Q gi|254780752|r  483 PIVYAAALDSGYTPASVIMDAPIEVVSRGK--IWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENF  560 (817)
Q Consensus       483 P~vy~~Ale~G~tp~t~~~D~p~~~~~~~~--~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~  560 (817)
                      ||+|+||||+|+||+|+++|+|+.+.+++.  .|+|+||+++|.|+++||.||++|.|+++|++++.+|++.+.+|+++|
T Consensus       463 PfvYsAALd~G~T~asvi~DaPi~~~~~~~~~~W~PkNy~gk~~Gp~~lR~gL~qSrNl~aVR~l~~vG~d~~~ey~~rf  542 (797)
T COG5009         463 PFVYSAALDKGLTPASVINDAPISFWDGGGGGVWRPKNYGGKFAGPITLRQGLEQSRNLVAVRLLDAVGVDYAAEYIKRF  542 (797)
T ss_pred             HHHHHHHHHCCCCHHHEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             78999998649987670137884664699887527788898756733899999970128999999985759999999984


Q ss_pred             CCC-CCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             565-5567665634451000037767432201574403544666764102443013358532355666666655455467
Q gi|254780752|r  561 GIY-DKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEII  639 (817)
Q Consensus       561 Gi~-~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~  639 (817)
                      ||. ++.++.+|+|||++++||+|||+||++|||||..++||+|++|+|++|++|+++++++|..|....+.....+...
T Consensus       543 G~~~d~~~~~~smALGs~e~Tplqma~AYaVfaNGG~~VeP~~I~~I~Dr~Gkvif~~~p~~~~~~~~~~~~~~~~~~~~  622 (797)
T COG5009         543 GFYTDELPPVLSMALGSGETTPLQMARAYAVFANGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLA  622 (797)
T ss_pred             CCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEEECCCHHHHHHCCCCCCCCCCCCCC
T ss_conf             97745668541211143354289987667631069807564444536548886675358156544223322355554322


Q ss_pred             CCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCC-EEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCC
Q ss_conf             5543535899999999999998734804321059960-467604678970227984569879999982668982789864
Q gi|254780752|r  640 DKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRP-VAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHAT  718 (817)
Q Consensus       640 ~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~-iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~  718 (817)
                      ....||+|+.+||+|++||++||.+|||+++..++++ ||||||||||++|+||+||+|++|++||||||++++||.+++
T Consensus       623 ~~~~qVid~~~ay~itsml~~vv~~GT~~~a~~L~r~DiAGKTGTTNd~kDAWfvGy~P~~Vt~vwvGfD~~rsLG~~~t  702 (797)
T COG5009         623 DYAPQVIDPMTAYQITSMLRGVVQRGTAARAGRLGRPDIAGKTGTTNDSKDAWFVGYTPDLVTGVWVGFDHPRSLGRGET  702 (797)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf             35240268337899999998888603377787439854366777778765526733689826899986689866767777


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             42121799999999997489830067977716998403227758899976089953178999865677776667776445
Q gi|254780752|r  719 GSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGPAETYTVIDEDSNVSSEEI  798 (817)
Q Consensus       719 G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~~~e~f~~gt~P~~~~~~~~~~~~~~~~~~  798 (817)
                      |++.|+|+|.+||+.+|+++|..+|.+|+||+.+.|++.||+++..+|++++.|+|++||.|++++..+.......+.+ 
T Consensus       703 G~~~A~Piw~~fM~~alk~~P~~~f~~P~gi~~~~i~~~TG~~~~~g~~~~~~e~f~~gt~p~~~~~~~~~~~~~~~~~-  781 (797)
T COG5009         703 GGKLALPIWIDFMKVALKGKPEKDFVPPPGIVSINIDRKTGLLANEGAPKTIIEYFIPGTQPTETESVEGQRGFEIPDD-  781 (797)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             8775664699999999738986666799974388764556612689997651443057999875313356667778765-


Q ss_pred             CCCCCCCCCCCCCCCCCCC
Q ss_conf             6788877888889998879
Q gi|254780752|r  799 LRRSPQANQAINSGSGGLY  817 (817)
Q Consensus       799 ~~~~p~~~~~~~~~~gg~~  817 (817)
                        ..|+. .+...+..+||
T Consensus       782 --~~p~~-~~~~~~~~~lf  797 (797)
T COG5009         782 --DVPNA-NASNGQILELF  797 (797)
T ss_pred             --CCCCC-CCCCCCCCCCC
T ss_conf             --56554-56777666779


No 2  
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=100.00  E-value=0  Score=1603.64  Aligned_cols=767  Identities=34%  Similarity=0.607  Sum_probs=662.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCHHHHH
Q ss_conf             99999999999999999999999999987046989788512477887799907894966661256046417996978885
Q gi|254780752|r    6 VSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVKY   85 (817)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~~l~~   85 (817)
                      |||+++|+++++++++++++++.++++++.++||+++.|++++++.+|+|||+||++|++|+.|||++|++++||++|++
T Consensus         1 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~Iy~~dG~li~~~~~e~R~~V~~~~IP~~l~~   80 (850)
T PRK11636          1 MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQVYSADGELIAQYGEKRRIPVTLDQIPPEMVK   80 (850)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCEEECHHHCCHHHHH
T ss_conf             91599999999999999999999999987169979578625588887389917997966744236469337988989873


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH
Q ss_conf             45433214611338737999999999986320478867761147999888877088832999999999999998660799
Q gi|254780752|r   86 AFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKE  165 (817)
Q Consensus        86 A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~  165 (817)
                      ||||+||+|||+|+|||++||+||++.|++   +|+..|||||||||||||+||++|||+.||++|+++|++||++||||
T Consensus        81 A~vA~ED~rFy~H~GvD~~gi~RA~~~nl~---~g~~~qGgSTITQQlaKn~~l~~e~t~~RKikE~~lA~~lE~~~sK~  157 (850)
T PRK11636         81 AFIATEDSRFYEHHGVDPVGIFRAASVALF---SGHASQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKD  157 (850)
T ss_pred             HEEHHHHCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf             332074176234789899999999999985---59978770289999998863587665899999999999999865999


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             99999720142674331099999987354234403027125444015764332111114667899888766654201112
Q gi|254780752|r  166 KILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQ  245 (817)
Q Consensus       166 eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~  245 (817)
                      ||||+|||+||||+|+|||+|||++||||+++||||+|||+||||||+|+.|||++||+++++|||+||++|+++||||+
T Consensus       158 eILe~YLN~iyfG~~ayGV~aAA~~YFgK~~~eLtl~EaA~LAgl~qaPs~y~P~~npe~a~~Rrn~VL~~M~~~G~It~  237 (850)
T PRK11636        158 EILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQ  237 (850)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999854536789628899999998688801099999999984467987789666989999999999999998699889


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56888753011124454322234571567998853110012433125732898524888989999999987676544432
Q gi|254780752|r  246 EQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDG  325 (817)
Q Consensus       246 ~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g  325 (817)
                      +||++|+++||..+.+.. .....+|||+|+||++|.++||++ +|++||+||||||+++|++|++++++++..||+|||
T Consensus       238 ~e~~~A~~~pi~~~~~~~-~~~~~apy~~e~Vr~~l~~~~g~~-~y~~Gl~IyTTld~~lQ~~Ae~av~~~l~~~d~r~g  315 (850)
T PRK11636        238 AQYDQARSEAIVANYHAP-EIAFSAPYLSEMVRQEMYNRYGES-AYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHG  315 (850)
T ss_pred             HHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCHH-HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999718764466676-555677089999999999873433-305885588844889999999999974777766514


Q ss_pred             HHCCHHCCCCHH--HHH--HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCC
Q ss_conf             100000012112--488--7786333201335554104765214402676520334431000024442348889665200
Q gi|254780752|r  326 FRGPIKRIDLKK--DWG--NTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYN  401 (817)
Q Consensus       326 ~rg~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (817)
                      ||+|...+....  .|.  ........+........+.+.+........           .........+..+.++|++.
T Consensus       316 yrg~~~~l~~~~~~~~~~~~i~~~~~~~~~~g~~~~~vv~~~~~~~~~~-----------~~~~g~~~~l~~~~~~~a~~  384 (850)
T PRK11636        316 YRGPANVLWKVGESAWDNKKITDTLKALPTYGPLLPAVVTSANPQEATA-----------MLADGSSVALSMEGVRWARP  384 (850)
T ss_pred             CCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHE-----------ECCCCCEEEEEHHHHHHHHH
T ss_conf             4452122112332035578999987505433555303787406112210-----------10478534630555565542


Q ss_pred             CC---CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             11---223332100001364631012356651577522555311664065666611787213234443320012335665
Q gi|254780752|r  402 KE---QTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPG  478 (817)
Q Consensus       402 ~~---~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpG  478 (817)
                      ..   ..........+.+..|+.++++..++.+.|.|+|++|+|+|+|||+||+|+|||||+||..++||||+|+.||||
T Consensus       385 ~~~~~~~g~~~~~~~~~l~~g~~v~v~~~~~~~~l~q~P~vq~AlV~iDp~tG~V~A~vGG~d~~~s~fNrA~qa~RQpG  464 (850)
T PRK11636        385 YRSDTQQGPTPRKVTDVVQTGQQIWVRQVDDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVG  464 (850)
T ss_pred             HCCCHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf             02401025550037887345656888624766310257332121798606778346751675642113225443444788


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCEEEEEC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEE
Q ss_conf             3100001278874024665445652378803--78526664127654422566666653044022588762597235211
Q gi|254780752|r  479 SCFKPIVYAAALDSGYTPASVIMDAPIEVVS--RGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADY  556 (817)
Q Consensus       479 St~KP~vy~~Ale~G~tp~t~~~D~p~~~~~--~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~  556 (817)
                      |+||||+|++|||+|++|+|+++|.|+.+..  .+..|+|+||+++|+|+++||+||++|+|+++|++++++|++.+.++
T Consensus       465 StfKPfvYaaAle~G~t~~t~v~D~Pi~~~~~~~g~~w~P~N~~~~~~G~vtlr~AL~~S~N~~aVrl~~~vG~~~~~~~  544 (850)
T PRK11636        465 SNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWRPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEY  544 (850)
T ss_pred             CCHHHHHHHHHHHCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHH
T ss_conf             65178999999974999644505877123027888866700799883886999999984847999999998696999999


Q ss_pred             ECCCCCCCC-CCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCC-CCCCCCCCCCCC--
Q ss_conf             013556555-6766563445100003776743220157440354466676410244301335853-235566666665--
Q gi|254780752|r  557 AENFGIYDK-MLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQR-ICDDCNYDTWNG--  632 (817)
Q Consensus       557 ~~~~Gi~~~-~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~-~~~~~~~~~~~~--  632 (817)
                      +++|||..+ ..+.+|++||+.++||||||+||++|||+|++++|++|+||+|++|++||+++|+ .|..|.......  
T Consensus       545 ~~~~Gi~~~~~~~~~slaLGs~~vtplema~AYatfAN~G~~~~P~~I~kI~D~~G~vi~~~~p~~~~~~~~~pv~~~~~  624 (850)
T PRK11636        545 LQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPYFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT  624 (850)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             99849985566766320257677679999999999973986616689999987999788743664345433433213444


Q ss_pred             ----------------------CCCCC---------------CCCCCCEECCHHHHHHHHHHHHHHHH-----CCCEEHH
Q ss_conf             ----------------------54554---------------67554353589999999999999873-----4804321
Q gi|254780752|r  633 ----------------------QDEPE---------------IIDKREQVLDPMTAYQITSMLEGVIK-----HGTATGK  670 (817)
Q Consensus       633 ----------------------~~~~~---------------~~~~~~~v~s~~~a~~~~~~L~~vv~-----~GTg~~a  670 (817)
                                            ...|.               ...-..+|+++.+||+|++||++||.     .|||+++
T Consensus       625 ~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~vi~~~~a~lm~~~l~~~v~~~~g~~GTg~~a  704 (850)
T PRK11636        625 QKSNVLENNNVEDVAISQEQQNSSVPMPQLEQANQALVAQNGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWMGTGWRA  704 (850)
T ss_pred             CCHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             10011011012332201223334566302321120122102221134201236889999999862013565567608887


Q ss_pred             C--CCCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCC--------------CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             0--5996046760467897022798456987999998266898--------------27898644212179999999999
Q gi|254780752|r  671 V--RLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPA--------------PLNNHATGSTLTAPIFNAFMKEA  734 (817)
Q Consensus       671 ~--~~~~~iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~--------------~~~~~~~G~~~a~piw~~~m~~~  734 (817)
                      .  ..++|+||||||||+++|+||+||||+||++||||||++.              +++...+|++.|+|||.+||+.+
T Consensus       705 ~~~l~~~~~AGKTGTTn~~~DaWFvGytp~~~~~VWvG~Dd~~~~lg~~~~~g~~~~~~~~~~~g~~~a~piW~~~M~~a  784 (850)
T PRK11636        705 GRDLKRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGRTTASGAIKDQISGYEGGAKSAQPAWDAYMKAV  784 (850)
T ss_pred             HHCCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             75047996525777679971279962579958999970158866456544455555555565543366799999999999


Q ss_pred             HCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             74898300679777169984032277588999760899531789998656777766
Q gi|254780752|r  735 LKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGPAETYTVIDED  790 (817)
Q Consensus       735 ~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~~~e~f~~gt~P~~~~~~~~~~  790 (817)
                      |+++|..+|++|+||+.++||+.||+||+++|  ++.|||++||+||++|+.+...
T Consensus       785 ~~~~~~~~f~~P~gi~~~~I~~~sG~la~~~~--~~~e~F~~Gt~Pt~~~~~~~~~  838 (850)
T PRK11636        785 LEGVPEQPLTPPPGIVTVNIDRSTGQLANGGN--SREEYFIEGTQPTQQAVHEVGT  838 (850)
T ss_pred             HCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC--CEEEEECCCCCCCCCCCCCCCC
T ss_conf             72699788999998179998766588899999--5476524899987350336785


No 3  
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816    Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=100.00  E-value=0  Score=1462.92  Aligned_cols=637  Identities=42%  Similarity=0.669  Sum_probs=553.3

Q ss_pred             CEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC---CCCCHH
Q ss_conf             60464179969788854543321461133873799999999998632047886776114799988887708---883299
Q gi|254780752|r   70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLT---SNQTMD  146 (817)
Q Consensus        70 ~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~---~e~t~~  146 (817)
                      +|.+|++++||++|++||||+||+|||+|+|||++||+||++.|++...||+..|||||||||||||+||+   +||||.
T Consensus         1 ~R~~V~~~~~P~~L~~A~~a~ED~rFy~H~GiD~~gI~RA~~~n~~~~~Hg~~~~GgSTITQQLaKn~yL~~~~~ert~~   80 (700)
T TIGR02074         1 RREYVSIDDIPENLINAFIAIEDRRFYDHFGIDLKGIGRAAVNNLTSGLHGGVLEGGSTITQQLAKNLYLTNSESERTIT   80 (700)
T ss_pred             CCEECCHHHCCHHHHHHEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             96005566448256745010114565001665588999999999873037874464126899999998504676613688


Q ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHH
Q ss_conf             99999999999986607999999972014267433109999998735423440302712544401576433211111466
Q gi|254780752|r  147 RKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAA  226 (817)
Q Consensus       147 RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a  226 (817)
                      ||+||++||++||++|||+||||+|||+||||+|+|||++|||.||||+++||||+||||||||||+|+.|||+.||++|
T Consensus        81 RK~~E~~LA~~lE~~~sK~~ILE~YLN~iYfG~G~YG~~~AA~~YFgK~v~~Ltl~EaA~LAGlpkaPs~Y~P~~~~e~A  160 (700)
T TIGR02074        81 RKIQEALLALKLEQKLSKDEILELYLNQIYFGNGAYGVEAAAQVYFGKSVNDLTLAEAALLAGLPKAPSAYNPFVNPERA  160 (700)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf             89999999999853059579997630242116884158899976069776527888999999861375202762216899


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHCCCHH------HHCCC
Q ss_conf             789988876665420111256888753011124454322-------23457156799885311001243------31257
Q gi|254780752|r  227 IARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRS-------HLFGSEYFAEEVRRQLIDRYGEK------ALYED  293 (817)
Q Consensus       227 ~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~-------~~~~a~yf~e~V~~~l~~~~ge~------~l~~~  293 (817)
                      ++|||+||.+|+++||||++|+++|+++|+.........       ....+|||.|+|++||.+++|..      .+|++
T Consensus       161 ~~Rr~~VL~~M~~~G~It~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~yf~d~V~~e~~~~~g~~~~~~~~~l~~~  240 (700)
T TIGR02074       161 KARRNLVLSRMVEEGYITAEEAEEAINEPIQNYLQDKKEDKSAIYASEYKYPYFVDYVIQELEKEYGLTENDLLQELYQG  240 (700)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             99999999999865897899999997424653101455323456655413603899999999874288577899999638


Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             32898524888989999999987676544432100000012112488778633320133555410476521440267652
Q gi|254780752|r  294 GLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIR  373 (817)
Q Consensus       294 Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  373 (817)
                      ||+||||||+++|++||+++++++....++.+.+.+...+. ..++.+ ......+...-......+...... ..... 
T Consensus       241 Gl~iyTtlD~~~Q~~Ae~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-  316 (700)
T TIGR02074       241 GLKIYTTLDLDMQKAAEKVLREGLREAGKQAGVRKSSESII-LEELYE-EKELLSLLSGLKTLLAKVRKVKKD-AKKER-  316 (700)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHH-HHHHHHHHHCCCEEEEECCCHHHC-CCHHC-
T ss_conf             98999944868999999999721022354201477611222-123223-888755541451013311001100-11100-


Q ss_pred             CCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCC
Q ss_conf             03344310000244423488896652001122333210000136463101235665157752255531166406566661
Q gi|254780752|r  374 PTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRI  453 (817)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~I  453 (817)
                          ....+ ... ...+..-.+.|..     ....+.. + ++.| +|.|+..... .+.+++++|+|+|+|||+||+|
T Consensus       317 ----~~i~L-i~g-~~~~~~~~~~~~~-----~~~NK~~-~-~~~g-vi~v~~~~~~-~~~~~~~~q~A~V~~D~~TG~v  381 (700)
T TIGR02074       317 ----VVIDL-IDG-KAKIEIVDLLKAA-----KKDNKSV-D-LKKG-VIVVKNKLGR-ALIAIPDLQAALVAIDPKTGAV  381 (700)
T ss_pred             ----CCCCC-CCC-CEEHHHHHHHHHH-----HHHCCEE-E-ECCC-EEEEEECCCC-HHHHCCCCCEEEEEEECCCCEE
T ss_conf             ----01247-541-1002335556778-----7617804-4-2144-7998306870-2320533250068984589768


Q ss_pred             EEEEECCCCCC---CCCCCCCCCCCCCCCCCHHH-HHHHHHHCC--CCCCCCCCCCEEEEEC---CCCEEEEEECCCCCC
Q ss_conf             17872132344---43320012335665310000-127887402--4665445652378803---785266641276544
Q gi|254780752|r  454 LATIGGFSYSQ---SEFNRSTQAMRQPGSCFKPI-VYAAALDSG--YTPASVIMDAPIEVVS---RGKIWKPENYSKNFS  524 (817)
Q Consensus       454 lA~vGg~d~~~---~~~NrA~~~~rqpGSt~KP~-vy~~Ale~G--~tp~t~~~D~p~~~~~---~~~~~~p~N~~~~~~  524 (817)
                      +|||||+||..   ++||||||++|||||||||| ||++|||.|  ++|++++.|+|..|..   .|..|+|+||+++|.
T Consensus       382 ~A~VGG~dy~~~v~~~fNRAT~a~RQPGStfKPf~VY~~Ale~G~~~~~~~~~~D~P~~~~~~~~~G~~w~P~Ny~g~y~  461 (700)
T TIGR02074       382 RALVGGRDYGENVSSQFNRATQAKRQPGSTFKPFAVYAAALEKGLKYTPASILDDEPITYSGDPGNGGGWEPKNYGGKYR  461 (700)
T ss_pred             EEEECCEECCCCCCCCCCHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCEECCCCCEE
T ss_conf             99874612377764464201000268651265799999999850434701033303345358889889503000688146


Q ss_pred             CHHHHHHHHHHHCCHHHHHHHHHCC-CCEEEEEECCCCCCCC-CC-----CCCCCCCCCCE----EHHHHHHHHHHHCCC
Q ss_conf             2256666665304402258876259-7235211013556555-67-----66563445100----003776743220157
Q gi|254780752|r  525 GASTLRFGLEKSRNLMTVRLAHNMG-MTVVADYAENFGIYDK-ML-----PVLPMSLGAGE----TTVLRMVSAYAVFAN  593 (817)
Q Consensus       525 G~itl~~Al~~S~N~~~v~l~~~~G-~~~~~~~~~~~Gi~~~-~~-----~~~s~alG~~~----vtpl~la~aya~~AN  593 (817)
                      |.|||++||++|+|+|||+|+++|| ++.+.+++++|||+.+ .+     +.+|+|||+.+    |||||||+||++|||
T Consensus       462 G~vtl~~ALa~S~N~pAv~l~~~vG~~~~~~~~~~~~Gi~~~~~~E~T~~~~~s~ALG~~e~~~Gv~pl~~A~AYa~FaN  541 (700)
T TIGR02074       462 GNVTLRQALAQSINIPAVKLLDEVGFLDKVVALAKRFGITSPELPEKTLDPVLSLALGTVESRKGVSPLEMASAYAVFAN  541 (700)
T ss_pred             ECCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             13329999751223899999987078279999999708878766665888756501066543447568999987677641


Q ss_pred             CCEEEEEEEEEEEEEC-CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHC
Q ss_conf             4403544666764102-44301335853-235566666665545546755435358999999999999987348043210
Q gi|254780752|r  594 GGKQIRPSFIDRIQNR-YGKTIFNQEQR-ICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKV  671 (817)
Q Consensus       594 ~G~~~~P~~i~kI~d~-~G~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~  671 (817)
                      +|.+++||+|+||+|+ +|++|+++... +.           ..-...+.++||+||.+|++|++||++||+ |||++|.
T Consensus       542 ~G~~~eP~~I~~I~~~r~G~~~~~~~~~~~~-----------a~~~~~~~~~~v~~~~~a~~m~~ml~~vv~-GTG~~A~  609 (700)
T TIGR02074       542 GGKYVEPHFIRKIVDRRDGKVLYENERDDVL-----------AKLKAKPETTQVISPATAYIMTDMLKSVVE-GTGRSAR  609 (700)
T ss_pred             CCEEECCEEEEEEEECCCCCEEEECCCCCEE-----------EEEECCCCCCEECCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf             7800246379999864788363404777416-----------653068876211288889999998878756-6778777


Q ss_pred             ----CCCCCEEEEECCCCC-------------CCCEEEEEECCCEEEEEEEECCCCC-----CCCCC---CCCCCCCHHH
Q ss_conf             ----599604676046789-------------7022798456987999998266898-----27898---6442121799
Q gi|254780752|r  672 ----RLNRPVAGKTGTTSS-------------YRDTWFIGYTPTLVVGVYVGYDIPA-----PLNNH---ATGSTLTAPI  726 (817)
Q Consensus       672 ----~~~~~iaGKTGTt~~-------------~~D~WfvG~tp~~~~~vWvG~D~~~-----~~~~~---~~G~~~a~pi  726 (817)
                          ..++|+||||||||+             ++|+|||||||+||++||||||+++     +++.+   .+|+..|+||
T Consensus       610 ~Y~~~~~~~~AGKTGTT~~p~e~~~~y~~pSa~~D~WFvGyTP~~v~aVW~G~D~~~~E~~~~~~~~a~~~~G~~~aa~~  689 (700)
T TIGR02074       610 EYDKLPGRPVAGKTGTTNNPEEETSKYIKPSAARDAWFVGYTPYYVTAVWVGYDDKKKEYKLTLGKGALEVTGGGLAAPI  689 (700)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCEEECCCCCEEEECCCCCCHHH
T ss_conf             53430686322454889887133103436765547513501677589999740489743110466503651565310789


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999999748
Q gi|254780752|r  727 FNAFMKEALKN  737 (817)
Q Consensus       727 w~~~m~~~~~~  737 (817)
                      |++||+.++++
T Consensus       690 w~~fM~~a~~~  700 (700)
T TIGR02074       690 WRDFMAEALKN  700 (700)
T ss_pred             HHHHHHHHCCC
T ss_conf             99999996059


No 4  
>PRK09506 mrcB penicillin-binding protein 1b; Reviewed
Probab=100.00  E-value=0  Score=1300.41  Aligned_cols=575  Identities=29%  Similarity=0.473  Sum_probs=523.5

Q ss_pred             CCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf             25604641799697888545433214611338737999999999986320478867761147999888877088832999
Q gi|254780752|r   68 RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDR  147 (817)
Q Consensus        68 ~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~R  147 (817)
                      .|+|++|++++||++|++||||+||+|||+|+|||++||+||++.|++   +|+.+|||||||||||||+||++|||+.|
T Consensus       208 ~EdR~~V~ld~vP~~Li~AllA~EDrrFY~H~GVD~~gI~RA~~~Nl~---~G~~vQGGSTITQQLvKNlfLs~ErTl~R  284 (839)
T PRK09506        208 GEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLT---AGRTVQGASTLTQQLVKNLFLSSERSYWR  284 (839)
T ss_pred             CCCEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf             872478435989999986778786345234788499999999999986---49946770489999999863487666999


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCC----CCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf             9999999999986607999999972014267433----109999998735423440302712544401576433211111
Q gi|254780752|r  148 KIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNS----YGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKN  223 (817)
Q Consensus       148 K~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~----yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np  223 (817)
                      |++|+++|++||++||||||||+|||+||||++.    |||++||++||||+++|||++|||+||||+|+||.|||++||
T Consensus       285 KikEa~lAl~LE~~ySKdEILE~YLN~IY~Gq~g~~~iyGi~aAAq~YFgK~~~eLtl~EaAlLaGl~k~PS~YnP~rnp  364 (839)
T PRK09506        285 KANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNP  364 (839)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             99999999999876599999999730134478977740639999998869991779999999995016796656987798


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCH
Q ss_conf             46678998887666542011125688875301112445432223457156799885311001243312573289852488
Q gi|254780752|r  224 KAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDP  303 (817)
Q Consensus       224 ~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I~TTiD~  303 (817)
                      +++++|||+||++|+++|+||++||+.+.++|+....+  .......|||+++|+++|.++++++.+..+||+||||||+
T Consensus       365 e~A~~RRn~VL~~M~e~g~It~~ey~~a~~~pL~v~p~--~~~~~~~P~f~~~V~~eL~~~~g~~~~~~~GLkI~TTLDp  442 (839)
T PRK09506        365 KLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPR--GGVISPQPAFMQMVRQELQAKLGDKVKDLSGVKIFTTFDS  442 (839)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCH
T ss_conf             99999999999999986999999999985377633446--6656656689999999999860503430577069963899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEE
Q ss_conf             89899999999876765444321000000121124887786333201335554104765214402676520334431000
Q gi|254780752|r  304 QLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVT  383 (817)
Q Consensus       304 ~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  383 (817)
                      .+|++||+++.+++..+.+..                                                           
T Consensus       443 ~~Q~~AE~av~~~l~~l~~~~-----------------------------------------------------------  463 (839)
T PRK09506        443 VAQDAAEKAVVEGIPALKKQR-----------------------------------------------------------  463 (839)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_conf             999999999998678876422-----------------------------------------------------------


Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCC
Q ss_conf             02444234888966520011223332100001364631012356651577522555311664065666611787213234
Q gi|254780752|r  384 TERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYS  463 (817)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~  463 (817)
                                                                         ....+|+|+|+|||+||+|+|||||+|+.
T Consensus       464 ---------------------------------------------------~~~~lq~A~VviD~~TG~V~AmVGG~d~~  492 (839)
T PRK09506        464 ---------------------------------------------------KLSDLETAMVVVDRFSGEVRAMVGGSEPQ  492 (839)
T ss_pred             ---------------------------------------------------CCCCCEEEEEEEECCCCEEEEEECCCCCC
T ss_conf             ---------------------------------------------------77664057999978998599997488877


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCEEEEEC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCHH
Q ss_conf             44332001233566531000012788740--24665445652378803-7852666412765442256666665304402
Q gi|254780752|r  464 QSEFNRSTQAMRQPGSCFKPIVYAAALDS--GYTPASVIMDAPIEVVS-RGKIWKPENYSKNFSGASTLRFGLEKSRNLM  540 (817)
Q Consensus       464 ~~~~NrA~~~~rqpGSt~KP~vy~~Ale~--G~tp~t~~~D~p~~~~~-~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~  540 (817)
                      .++||||++++|||||+||||+|++||++  +++++|.+.|.|+.+.. .|..|+|+||+++|+|.|+|++||++|+|++
T Consensus       493 ~sgfNRA~~A~RQ~GSt~KPfvY~aAL~~~~~~~~~T~l~D~Pi~~~~~~G~~W~P~Nyd~~~~G~VtLr~ALa~S~N~p  572 (839)
T PRK09506        493 FAGYNRAMQARRSIGSLAKPATYLTALSQPDKYRLNTWIADAPISLRQPNGQVWSPQNDDRRYSGRVMLVDALTRSMNVP  572 (839)
T ss_pred             CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH
T ss_conf             66761345467799765118999999866799777645245354864689874388648998657121999998583899


Q ss_pred             HHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             258876259723521101355655-5676656344510000377674322015744035446667641024430133585
Q gi|254780752|r  541 TVRLAHNMGMTVVADYAENFGIYD-KMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQ  619 (817)
Q Consensus       541 ~v~l~~~~G~~~~~~~~~~~Gi~~-~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~  619 (817)
                      +|+|++++|++++.+++++|||.. ...+.+|++||+.++||+|||+||++|||+|.+++|++|++|+|.+|++||++.+
T Consensus       573 aVrL~~~vGl~~v~~~~~~lGi~~~~~~~~pSlaLGa~evSplemA~AYatfAN~G~~~~p~~I~~V~d~~G~vl~~~~p  652 (839)
T PRK09506        573 TVNLGMALGLPAVTDTWIKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFP  652 (839)
T ss_pred             HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCEECCCEEEEEEECCCCCEEEECCC
T ss_conf             99999987989999999986998666888867310778888999999999997598773888999999899998830699


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHC--CCCCCEEEEECCCCCCCCEEEEEECC
Q ss_conf             3235566666665545546755435358999999999999987348043210--59960467604678970227984569
Q gi|254780752|r  620 RICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKV--RLNRPVAGKTGTTSSYRDTWFIGYTP  697 (817)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~--~~~~~iaGKTGTt~~~~D~WfvG~tp  697 (817)
                                           ..+||+++++||+|++||++||++|||+++.  ..++++|||||||||++|+|||||||
T Consensus       653 ---------------------~~~rvis~~~A~l~~~~L~~Vv~~GTgr~l~~~~p~~~vAGKTGTTnd~rDaWFvG~T~  711 (839)
T PRK09506        653 ---------------------QAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDG  711 (839)
T ss_pred             ---------------------CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEECCCCCCCEEEEEEEECC
T ss_conf             ---------------------86503799999999999999865255244662489985147888879982169985369


Q ss_pred             CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEECCC
Q ss_conf             87999998266898278986442121799999999997489830067977716998403227758899976089953178
Q gi|254780752|r  698 TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPG  777 (817)
Q Consensus       698 ~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~~~e~f~~g  777 (817)
                      +|+++||||+|||+++  +.+|++.|+|||.+||+..  ...+-...+|++|..+.||...|.+-..+|.    -+++=.
T Consensus       712 ~~v~~VWvG~DdN~p~--~ltG~sgAl~iw~~~m~~~--~~~~l~~~~p~~i~~~~~~~~~~~~~~~~~~----~~~~~~  783 (839)
T PRK09506        712 SEVTITWVGRDNNQPT--KLYGASGAMTIYQRYLANQ--TPTPLNLTPPEDIADMGVDYDGNFVCSGGMR----VLPVWT  783 (839)
T ss_pred             CEEEEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCEEEEEEECCCCCCCCCCCC----CCEEEE
T ss_conf             9599999825689987--8864132799999999736--9977667899983799860689803688720----340352


Q ss_pred             CCCCCCCCC
Q ss_conf             999865677
Q gi|254780752|r  778 TGPAETYTV  786 (817)
Q Consensus       778 t~P~~~~~~  786 (817)
                      +.|...|..
T Consensus       784 ~~~~~~~~~  792 (839)
T PRK09506        784 SDPQSLCQQ  792 (839)
T ss_pred             CCCHHHHHH
T ss_conf             382566554


No 5  
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=1165.75  Aligned_cols=562  Identities=41%  Similarity=0.670  Sum_probs=513.7

Q ss_pred             CCHHHHHCCCCCCCEEEECCCCCEEEEEEC--CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             897885124778877999078949666612--560464179969788854543321461133873799999999998632
Q gi|254780752|r   39 PDYAALNSYSPAVTTRIHAGNGALMAEYAR--ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRN  116 (817)
Q Consensus        39 P~~~~l~~~~~~~~t~iyd~dG~~i~~~~~--~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~  116 (817)
                      +....+.....+.++.+||++|+.+.....  ++|.+|++|+||++|++||||+||+|||+|+||||.||+||++.++. 
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~V~~~~ip~~l~~Avia~ED~~Fy~H~Gid~~~i~~aa~~~~~-  120 (661)
T COG0744          42 PILLDLLVPQTPKSTTIYDRDGKLILTLYSGEEHREWVPLDQIPPNLKQALIAIEDRRFYEHHGIDPKGIGRAALANNL-  120 (661)
T ss_pred             CCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCEEECHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH-
T ss_conf             4311112357876458997178413024566666515327988889986774114564246788398899999999875-


Q ss_pred             CCCC-CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             0478-867761147999888877088832999999999999998660799999997201426743310999999873542
Q gi|254780752|r  117 ISHG-RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKS  195 (817)
Q Consensus       117 ~~~g-~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~  195 (817)
                        +| +..|||||||||||||+||++++|+.||++|+++|++||+.||||||||+|||.||||+|+|||++||++||||+
T Consensus       121 --~g~~~~qGgSTITQQl~KN~fL~~~~t~~RK~~E~~lA~~LE~~~sKdeILe~YLN~vy~G~g~~Gv~aAA~~yFgk~  198 (661)
T COG0744         121 --SGGGVSQGGSTITQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFGRGAYGVEAAAQYYFGKP  198 (661)
T ss_pred             --CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             --478767862609999998874177863889999999999986332899999998534104788078999999981999


Q ss_pred             HHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             34403027125444015764332111114667899888766654201112568887530111244543222345715679
Q gi|254780752|r  196 VSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAE  275 (817)
Q Consensus       196 ~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e  275 (817)
                      ++|||++|+|+||||+|+|+.|||+++++.+++|||.||.+|+++|+||++|+++|+++|+... ..........+||.+
T Consensus       199 a~~Ltl~qaA~Lag~~~~Ps~y~p~~~~~~a~~R~~~VL~~M~~~g~It~~~~~~A~~~~l~~~-~~~~~~~~~~~~~~~  277 (661)
T COG0744         199 AKDLTLAQAALLAGLLKAPSLYNPYRPPEYARARRNLVLRRMVEQGYITAEEYDAALAEPLQVQ-QAKTVATSPPPYFDD  277 (661)
T ss_pred             HHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHH
T ss_conf             5887999999982505691003887881789999999999999849999999999854577655-343221346348999


Q ss_pred             HHHHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             98853110012433125732898524888989999999987676544432100000012112488778633320133555
Q gi|254780752|r  276 EVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEW  355 (817)
Q Consensus       276 ~V~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (817)
                      .|+++|.+.+|+..+.++||+||||||+++|++||++++ .  .+..                                 
T Consensus       278 ~v~~el~~~~g~~~l~~~gl~I~TTlD~~~Q~~ae~~v~-~--~~~~---------------------------------  321 (661)
T COG0744         278 VVRQELAELLGESDLLTGGLKVYTTLDPELQEAAEKAVQ-A--DPLY---------------------------------  321 (661)
T ss_pred             HHHHHHHHHCCCCHHHCCCEEEEECCCHHHHHHHHHHHH-H--CCCC---------------------------------
T ss_conf             999999986383222049858995779999999999986-3--0467---------------------------------


Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             41047652144026765203344310000244423488896652001122333210000136463101235665157752
Q gi|254780752|r  356 DIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQ  435 (817)
Q Consensus       356 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~  435 (817)
                                                                                                     .
T Consensus       322 -------------------------------------------------------------------------------~  322 (661)
T COG0744         322 -------------------------------------------------------------------------------K  322 (661)
T ss_pred             -------------------------------------------------------------------------------C
T ss_conf             -------------------------------------------------------------------------------7


Q ss_pred             CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEE
Q ss_conf             2555311664065666611787213234443320012335665310000127887402-466544565237880378526
Q gi|254780752|r  436 IPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIW  514 (817)
Q Consensus       436 ~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~  514 (817)
                      ...+|+|+|+||++||+|+|||||.|+..++||||+|+.||||||||||+|.+|+++| ++|++++.|.|+++.    .|
T Consensus       323 ~~~~q~a~v~~d~~tG~V~A~VGg~d~~~~~fNrAt~a~Rq~GSt~KP~~~~~a~~~~~~~~~~~~~d~p~~~~----~~  398 (661)
T COG0744         323 LRDVQAALVLIDPKTGAVRALVGGRDYQPSGFNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDAPVTYG----NW  398 (661)
T ss_pred             CCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCEECC----CC
T ss_conf             76503679999668985899976888986653300003678852588999999997389997744526872237----88


Q ss_pred             EEEECCCCCC-CHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCC
Q ss_conf             6641276544-225666666530440225887625972352110135565556766563445100003776743220157
Q gi|254780752|r  515 KPENYSKNFS-GASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFAN  593 (817)
Q Consensus       515 ~p~N~~~~~~-G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN  593 (817)
                      +|+||+++|. |.|+|++||++|.|+++|++++++|++++.+++++|||..+..+.++++||+.++||+|||+||++|||
T Consensus       399 ~p~N~~~~y~~g~vtl~~ALa~S~Nipav~l~~~vG~~~~~~~~~~lGi~~~~~~~~s~~lg~~~~sp~~ma~aY~~fan  478 (661)
T COG0744         399 SPKNYDGRYEGGSVTLREALATSLNIPAVRLLQKVGLDKVVDTAKKLGINSPLVPGPSLALGASEVSPLEMASAYATFAN  478 (661)
T ss_pred             CCEECCCCCCCCEECHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             87466786568526199998719999999999986748999999982998888886522268888989999998999960


Q ss_pred             CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC-CCEEHHCC
Q ss_conf             44035446667641024430133585323556666666554554675543535899999999999998734-80432105
Q gi|254780752|r  594 GGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH-GTATGKVR  672 (817)
Q Consensus       594 ~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~-GTg~~a~~  672 (817)
                      +|.+.+||+|+||+|.+| ++|++.+.                     .+||+|+++|++|++||+.||+. ||+..+..
T Consensus       479 gG~~~~p~~I~ki~~~~G-vl~~~~~~---------------------~~rv~~~~~a~~m~~ml~~vv~~tg~~~~a~~  536 (661)
T COG0744         479 GGTYYPPHFIRKVTDADG-VLYDNPPK---------------------VKRVLSPQAAYLMTDMLQGVVTPTGTGAAAKL  536 (661)
T ss_pred             CCEECCCEEEEEEECCCC-CEEECCCC---------------------CEEEECHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             983358746899988997-07636998---------------------63630898999999999998765076100256


Q ss_pred             CCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             996046760467897022798456987999998266898278986442121799999999997489830067977
Q gi|254780752|r  673 LNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPP  747 (817)
Q Consensus       673 ~~~~iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~  747 (817)
                      .+...+|||||||+++|+|||||||+|+++||+|+|++ ++ ...+|++.++++|++||+.++.+.+..+++.++
T Consensus       537 ~~~~~~GKTGTt~~~~D~WfvG~tp~~~~avW~G~d~~-~~-~~~~g~s~~a~iw~~~m~~a~~~~~~~~~~~~~  609 (661)
T COG0744         537 PGPYAAGKTGTTNDNRDAWFVGYTPQLTTAVWLGNDDN-PL-TPLTGGSDAAAIWKEFMGQALPGGLRVPFPFTD  609 (661)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCC-CC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             76555665678898764179831587589999845899-87-567677618999999999872268777888877


No 6  
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=100.00  E-value=0  Score=1156.31  Aligned_cols=562  Identities=28%  Similarity=0.384  Sum_probs=495.1

Q ss_pred             CCCEEEECCCCCEEEEEEC---CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8877999078949666612---5604641799697888545433214611338737999999999986320478867761
Q gi|254780752|r   50 AVTTRIHAGNGALMAEYAR---ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGA  126 (817)
Q Consensus        50 ~~~t~iyd~dG~~i~~~~~---~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGg  126 (817)
                      +.+++|||+||++|..+..   ++|.+|++|+|||++++|+||+||+|||+|+|||++||+||++.|++   +|+++|||
T Consensus        40 ~~a~vv~~~dG~~L~~~~~~dg~wR~~v~ld~v~p~l~~Alla~ED~rFy~H~GVD~~ai~RA~~~nl~---~g~~~~Gg  116 (770)
T PRK11240         40 NPARVVVAEDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLT---SGRVISGG  116 (770)
T ss_pred             CCCEEEECCCCCCHHHEECCCCCEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCC
T ss_conf             863799978997831105657876546893889999998899987145134789399999999999985---59815770


Q ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEE
Q ss_conf             14799988887708883299999999999999866079999999720142674331099999987354234403027125
Q gi|254780752|r  127 STITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAY  206 (817)
Q Consensus       127 STITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~  206 (817)
                      ||||||||| ++..++||+.||++|+++|++||++||||||||+|||.||||+|+|||+|||+.||||+++|||++|||+
T Consensus       117 STITqQlaR-ll~~~~Rt~~rKl~E~~~A~~LE~~~SKdeILe~YLN~~pfG~~~~Gv~AAs~~YFgK~~~~LtlaEaAl  195 (770)
T PRK11240        117 STLTMQVAR-LLDPHPRTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAAL  195 (770)
T ss_pred             CHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHH
T ss_conf             489999997-5278877699999999999999986599999999862466787079999999998399927799999999


Q ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             44401576433211111466789988876665420111256888753011124454322234571567998853110012
Q gi|254780752|r  207 LAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYG  286 (817)
Q Consensus       207 LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~g  286 (817)
                      ||||||+|++|||.+||+++++|||.||++|+++|+|+++|+++|.++|+.+..+..+   ..+|||.+.+.++      
T Consensus       196 LA~LpqaPs~y~P~~~p~~a~~rR~~VL~rm~~~g~i~~~~~~~a~~epl~~~~~~~p---~~ap~~~~~~~~~------  266 (770)
T PRK11240        196 LAVLPQAPSRLRPDRWPERAEAARNKVLERMAEQGVWPAEQVKESREEPVWLAPRQMP---QLAPLFARMMLGK------  266 (770)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHH------
T ss_conf             8341458755685449899999999999999985999999999987464455654550---4679999999740------


Q ss_pred             HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf             43312573289852488898999999998767654443210000001211248877863332013355541047652144
Q gi|254780752|r  287 EKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNS  366 (817)
Q Consensus       287 e~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  366 (817)
                           ..+.+||||||..||+.+|+++++....+                                              
T Consensus       267 -----~~~~~I~TTlD~~lQ~~~e~~~~~~~~~l----------------------------------------------  295 (770)
T PRK11240        267 -----SKSDKIVTTLDAGLQRRLEDLAQNWKGRL----------------------------------------------  295 (770)
T ss_pred             -----CCCCEEEECCCHHHHHHHHHHHHHHHHHC----------------------------------------------
T ss_conf             -----57974995759999999999998777516----------------------------------------------


Q ss_pred             CEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE
Q ss_conf             02676520334431000024442348889665200112233321000013646310123566515775225553116640
Q gi|254780752|r  367 HITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAM  446 (817)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~i  446 (817)
                                                                                           .+..|+|+|+|
T Consensus       296 ---------------------------------------------------------------------~~~~~~A~vvi  306 (770)
T PRK11240        296 ---------------------------------------------------------------------PERSSLAMIVV  306 (770)
T ss_pred             ---------------------------------------------------------------------CCCCCCEEEEE
T ss_conf             ---------------------------------------------------------------------87556359999


Q ss_pred             CCCCCCCEEEEECCCCC-CCCCCCC--CCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCEEEEEECCCC
Q ss_conf             65666611787213234-4433200--123356653100001278874024-6654456523788037852666412765
Q gi|254780752|r  447 DPRTGRILATIGGFSYS-QSEFNRS--TQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVVSRGKIWKPENYSKN  522 (817)
Q Consensus       447 d~~TG~IlA~vGg~d~~-~~~~NrA--~~~~rqpGSt~KP~vy~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p~N~~~~  522 (817)
                      |++||+|+|||||.||. .+.||++  +++.||||||||||+|++|||+|+ +|+|++.|.|..|.+    |.|+||+++
T Consensus       307 D~~tg~V~A~VG~~d~~~~~~~g~vd~~~A~RqPGStlKPfvYa~Ale~G~i~p~s~l~D~P~~~g~----y~P~Nfd~~  382 (770)
T PRK11240        307 DHTDMAVRGWVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGD----YRPGNFDSG  382 (770)
T ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC----CCCCCCCCC
T ss_conf             7899808999837666754446763302035689623889999999976999988784168701488----687027887


Q ss_pred             CCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEE
Q ss_conf             44225666666530440225887625972352110135565556----76656344510000377674322015744035
Q gi|254780752|r  523 FSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM----LPVLPMSLGAGETTVLRMVSAYAVFANGGKQI  598 (817)
Q Consensus       523 ~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~----~~~~s~alG~~~vtpl~la~aya~~AN~G~~~  598 (817)
                      |+|.|++++||++|+|+|+|++++++|++++.+.++++||...+    .+++|++||+.++||+||++||++|||+|.+.
T Consensus       383 ~~G~vt~r~AL~~SlNipAV~ll~~~G~~~~~~~l~~~Gi~~~l~~~~~~~LslaLGg~evtl~eLa~aYa~~An~G~~~  462 (770)
T PRK11240        383 FHGPVSMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLEDMAAAYSAFARHGKAA  462 (770)
T ss_pred             CCCEEEHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf             20611099999865479999999987969999999973997567877789853331576888999999999997798433


Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEE
Q ss_conf             44666764102443013358532355666666655455467554353589999999999999873480432105996046
Q gi|254780752|r  599 RPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVA  678 (817)
Q Consensus       599 ~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~ia  678 (817)
                      +|.+..      ++.                          ...++++|+++||+|++||+++++.++.. +...+.++|
T Consensus       463 ~~~~~~------~~~--------------------------~~~~~v~s~~aa~~~~~iL~~~~r~~~~~-~l~~~~pvA  509 (770)
T PRK11240        463 KLRLQP------DDP--------------------------LLERPLMSPGAAWIIRRIMADEAQPLPDA-ALPRVVPLA  509 (770)
T ss_pred             CCEECC------CCC--------------------------CCCCCCCCHHHHHHHHHHHHHCCCCCHHH-HCCCCCCCE
T ss_conf             517715------886--------------------------33213688888999999987504443011-002377624


Q ss_pred             EEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCEEEEECHH
Q ss_conf             76046789702279845698799999826689827898644212179999999999748983-00679777169984032
Q gi|254780752|r  679 GKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPS-SRFVAPPGMSLIPINKW  757 (817)
Q Consensus       679 GKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~-~~f~~P~~iv~~~i~~~  757 (817)
                      ||||||+++||+|||||||+||++||||+||++++ .+.+|...|+|||.++|+........ ...+.|++|.++.||..
T Consensus       510 gKTGTS~g~RDaWfvG~tp~ytvgVWvGn~Dg~p~-~~~~G~~~AaPllf~i~~~L~~~~~~~p~~~~P~~v~~~~iC~~  588 (770)
T PRK11240        510 WKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTPV-VGQFGFASAVPLLNQVNNLLLSRGANLPEDPRPASVSRGVICWP  588 (770)
T ss_pred             ECCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC
T ss_conf             43467888733389863598599999868999938-77406023587999999985324467888899987405666458


Q ss_pred             HCC-CC--CCCCCCEEEEEECCCCCCCC
Q ss_conf             277-58--89997608995317899986
Q gi|254780752|r  758 TGM-LS--KKGDPDTIIEAFKPGTGPAE  782 (817)
Q Consensus       758 sG~-la--~~~~~~~~~e~f~~gt~P~~  782 (817)
                      +|. ++  .+.|+....+||++|+.|..
T Consensus       589 ~G~~~~~~~~~C~~~~~~w~i~g~~p~~  616 (770)
T PRK11240        589 GGQSLPAGDSNCRRRLATWLLDGSQPPT  616 (770)
T ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             8874777899886430145427888973


No 7  
>TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813    Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall.
Probab=100.00  E-value=0  Score=1162.39  Aligned_cols=576  Identities=31%  Similarity=0.520  Sum_probs=535.9

Q ss_pred             CCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHH--HHHCCCCC
Q ss_conf             25604641799697888545433214611338737999999999986320478867-7611479998888--77088832
Q gi|254780752|r   68 RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRP-EGASTITQQVAKN--FLLTSNQT  144 (817)
Q Consensus        68 ~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~-qGgSTITQQlaKn--~~l~~e~t  144 (817)
                      .|.|..|++++.|+.|+++++|+|||+||+|+|||+.+|+||++.|++   +|+.+ |||||||||||||  +|||+|||
T Consensus       144 ~E~Rl~v~r~~~P~lLvdtLl~~EDR~Fy~HdGi~~~SI~RA~~vNl~---AG~tvrQGGSTLTQQLvKNGlLFLs~eRs  220 (742)
T TIGR02071       144 GEQRLFVPRDQFPELLVDTLLATEDRDFYEHDGISLYSIGRAVLVNLT---AGRTVRQGGSTLTQQLVKNGLLFLSNERS  220 (742)
T ss_pred             CCCEEEECCCCCCHHHEECEEEEECCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEECCCHHHHHHHHHHHCCCCCHHH
T ss_conf             543234001048411100115575102455587458799999999874---38826507402689999840002575147


Q ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             999999999999998660799999997201426743----3109999998735423440302712544401576433211
Q gi|254780752|r  145 MDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN----SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPF  220 (817)
Q Consensus       145 ~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~----~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~  220 (817)
                      +.||+.||++|+-||.+||||.|||.|||.||+|+.    +.||+-||++|||+++.||+|.|.|||+||+|+||.|||+
T Consensus       221 l~RK~NEa~MALild~rYsKdrILE~YLNEVYLGQ~G~~~IhGF~LAS~yyFGrpl~EL~ldQ~ALLVGMVKGpS~YnP~  300 (742)
T TIGR02071       221 LWRKINEAYMALILDARYSKDRILELYLNEVYLGQSGDDAIHGFPLASQYYFGRPLAELSLDQVALLVGMVKGPSLYNPW  300 (742)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             88999999999998513682278887532300076756521330334432237740010077787874211267778735


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-CCC-CCCCHHHHHHHHHHHHHCCCHH-HHCCCCEEE
Q ss_conf             1114667899888766654201112568887530111244543-222-3457156799885311001243-312573289
Q gi|254780752|r  221 RKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQR-RSH-LFGSEYFAEEVRRQLIDRYGEK-ALYEDGLSI  297 (817)
Q Consensus       221 ~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~-~~~-~~~a~yf~e~V~~~l~~~~ge~-~l~~~Gl~I  297 (817)
                      +||++|++|||.||..|+++++||+++|+.|.+-||....+.. -.. ..  |=|.+.|++||.++|+++ -....|+||
T Consensus       301 RnP~~AL~RRNLVL~lL~e~~~i~~~~Y~~l~~RpLgVqk~g~l~~sn~~--PAF~qlV~~eL~~kl~~~k~~~~~G~~i  378 (742)
T TIGR02071       301 RNPDRALERRNLVLRLLQEQKIITDEEYQALSARPLGVQKKGGLIISNRY--PAFLQLVRRELRQKLGDKKVKDLSGLRI  378 (742)
T ss_pred             CCHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf             10688875214789999744744778999997277988899866632788--5389999999997637755454578778


Q ss_pred             EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             85248889899999999876765444321000000121124887786333201335554104765214402676520334
Q gi|254780752|r  298 RTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTID  377 (817)
Q Consensus       298 ~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  377 (817)
                      .||+|+..|.+||+||.+.+..+.+++|-+                                                  
T Consensus       379 FTtlD~~~Q~~aE~av~~~~~~L~~~kG~~--------------------------------------------------  408 (742)
T TIGR02071       379 FTTLDPVSQSAAEQAVKETIPALKKKKGKK--------------------------------------------------  408 (742)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHHHCCCC--------------------------------------------------
T ss_conf             843797899999987876457888750678--------------------------------------------------


Q ss_pred             CCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEE
Q ss_conf             43100002444234888966520011223332100001364631012356651577522555311664065666611787
Q gi|254780752|r  378 SNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATI  457 (817)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~v  457 (817)
                                                                                .+++|+|+||+|.+||||+|||
T Consensus       409 ----------------------------------------------------------~~~LEaAmvv~D~~~GEvrA~v  430 (742)
T TIGR02071       409 ----------------------------------------------------------LKDLEAAMVVVDRFTGEVRALV  430 (742)
T ss_pred             ----------------------------------------------------------CCCCEEEEEEEECCCCEEEEEE
T ss_conf             ----------------------------------------------------------8853177889836887078887


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCEEEEECC-CCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             21323444332001233566531000012788740--246654456523788037-852666412765442256666665
Q gi|254780752|r  458 GGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS--GYTPASVIMDAPIEVVSR-GKIWKPENYSKNFSGASTLRFGLE  534 (817)
Q Consensus       458 Gg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~--G~tp~t~~~D~p~~~~~~-~~~~~p~N~~~~~~G~itl~~Al~  534 (817)
                      ||++-.-+.||||.+|+||.||-.||+||.+||++  .|+++|.+.|.|+.+... |..|+|+|||++|+|.|.|-+||+
T Consensus       431 Gg~~p~f~GFNRAl~A~R~iGSL~KP~vYLtALs~P~~Y~LnTw~~d~P~~ik~~~G~~W~P~N~D~~~~g~V~L~dALa  510 (742)
T TIGR02071       431 GGRDPQFAGFNRALQARRQIGSLVKPAVYLTALSQPDKYRLNTWIEDQPLSIKLSNGQVWSPRNYDRRYSGTVMLYDALA  510 (742)
T ss_pred             CCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEHHHHHH
T ss_conf             58788756010364163776432436899997278973114664236644775688872465147742256264678987


Q ss_pred             HHCCHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCC
Q ss_conf             3044022588762597235211013556555-676656344510000377674322015744035446667641024430
Q gi|254780752|r  535 KSRNLMTVRLAHNMGMTVVADYAENFGIYDK-MLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKT  613 (817)
Q Consensus       535 ~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~-~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~v  613 (817)
                      +|+|+|+|+|++++|++++.++..+||+... ++|.+||-||+.+.||.|||+.|.+|||||...+-+.|++|.|.+|++
T Consensus       511 ~S~N~pTV~lGm~vGl~~V~~t~~~LG~~k~~i~~~PsmlLGA~~ltP~evaq~YQtlAsgG~~~pL~avRSVl~~dG~v  590 (742)
T TIGR02071       511 RSLNIPTVNLGMKVGLDKVSQTLKKLGINKDEIPPVPSMLLGAISLTPYEVAQLYQTLASGGERAPLSAVRSVLDEDGKV  590 (742)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCE
T ss_conf             65317678864631767899999982877120476633552113668789998997762577554310220101147763


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHH--HHHHHHHHHHHHHHCCCEEHHC--CC-CCCEEEEECCCCCCC
Q ss_conf             133585323556666666554554675543535899--9999999999987348043210--59-960467604678970
Q gi|254780752|r  614 IFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPM--TAYQITSMLEGVIKHGTATGKV--RL-NRPVAGKTGTTSSYR  688 (817)
Q Consensus       614 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~--~a~~~~~~L~~vv~~GTg~~a~--~~-~~~iaGKTGTt~~~~  688 (817)
                      ||++.+                     ..+|+.+.+  .||++...|+.||++|||+...  .. ....|||||||||.|
T Consensus       591 Ly~~~~---------------------~~~~~~p~~svAaylt~~AMQqvV~~GTaRsL~~~~~~~l~LAGKTGTtNd~R  649 (742)
T TIGR02071       591 LYQSLP---------------------QAEQAVPSQSVAAYLTLYAMQQVVQRGTARSLGADFPSSLSLAGKTGTTNDSR  649 (742)
T ss_pred             EECCCC---------------------CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             301788---------------------74545774203577677787754201201100100466656545636568885


Q ss_pred             CEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCC-CC
Q ss_conf             22798456987999998266898278986442121799999999997489830067977716998403227758899-97
Q gi|254780752|r  689 DTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKG-DP  767 (817)
Q Consensus       689 D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~-~~  767 (817)
                      |+||+|++.+-++.||+|.|||.+.  ..||++.|+.||++||+..  .-..-..+.|+||....|+..++.-.... |+
T Consensus       650 DsWF~G~dG~~~~~~W~GRD~N~~T--kLtGAsGAl~vy~~yL~~~--~P~~L~l~~P~~i~~~~v~~~G~~~~~~~nC~  725 (742)
T TIGR02071       650 DSWFVGIDGKEVTIVWLGRDDNGPT--KLTGASGALQVYKRYLKYQ--TPEPLLLVPPEGIKMFGVDKQGNGGCKADNCP  725 (742)
T ss_pred             CEEEEEECCCEEEEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             1047764387899999852789884--7645315899999998525--88742336878833677744777302246899


Q ss_pred             CEEEEEECCCCCCC
Q ss_conf             60899531789998
Q gi|254780752|r  768 DTIIEAFKPGTGPA  781 (817)
Q Consensus       768 ~~~~e~f~~gt~P~  781 (817)
                      +.+.-+|..+..|.
T Consensus       726 ~~r~lP~w~~~~~~  739 (742)
T TIGR02071       726 GARRLPIWTGNEQA  739 (742)
T ss_pred             CCEEEEEECCCCCC
T ss_conf             84484267078766


No 8  
>TIGR02073 PBP_1c penicillin-binding protein 1C; InterPro: IPR011815    This entry contains penicillin binding proteins includes the member from Escherichia coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this entry are presumed to have the same basic function..
Probab=100.00  E-value=0  Score=983.03  Aligned_cols=593  Identities=29%  Similarity=0.420  Sum_probs=512.4

Q ss_pred             CCCEEEECCCCCEEEEEE---CCCEEEECH-HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             887799907894966661---256046417-9969788854543321461133873799999999998632047886776
Q gi|254780752|r   50 AVTTRIHAGNGALMAEYA---RENRLFLPI-QIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEG  125 (817)
Q Consensus        50 ~~~t~iyd~dG~~i~~~~---~~~R~~v~~-~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qG  125 (817)
                      +.+++|||+||+++..+-   .++|.+++. ++|||.+++|+|..||+|||+|.||||.+|+||+++++.   +|+++||
T Consensus         9 p~s~~v~Dr~G~~Lr~~~~~Dg~wRl~~~~~~~isp~~~~~ll~~ED~rFY~H~GVnp~al~Ra~~q~~~---~g~~~SG   85 (786)
T TIGR02073         9 PSSTVVLDRHGTLLRALLASDGQWRLPVDLEEDISPKFLEALLLYEDKRFYWHPGVNPLALLRAAWQNLV---SGRRVSG   85 (786)
T ss_pred             CCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHH---CCCCEEC
T ss_conf             8551455036870033412465330478877678989999998651301111388278999999898643---4870005


Q ss_pred             CCHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCC
Q ss_conf             11479998888770-----8883299999999999999866079999999720142674331099999987354234403
Q gi|254780752|r  126 ASTITQQVAKNFLL-----TSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELT  200 (817)
Q Consensus       126 gSTITQQlaKn~~l-----~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLt  200 (817)
                      ||||||||||.+.-     -..||+.-|++||+.|++||.+|||+|||++|||.++||++..|+.|||..||||.+++||
T Consensus        86 GSTLTMQlaRl~~~L~~~g~~~Rt~~~Kl~Q~~~A~~LE~~~sK~EIL~~YLn~APyGGnl~G~~aAS~~YFgK~p~~Ls  165 (786)
T TIGR02073        86 GSTLTMQLARLLDPLINVGRGSRTLLGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLS  165 (786)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             53488899999999983589997778999999999999975193789999983289881427589999998477745678


Q ss_pred             CCCEEEEEEECCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             0271254440157643321---1111466789988876665420111256888753011124454322234571567998
Q gi|254780752|r  201 IEEAAYLAALPKGPSNYDP---FRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEV  277 (817)
Q Consensus       201 l~EaA~LAgi~~~Ps~y~P---~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V  277 (817)
                      ++|||+||.|||+|+.+.|   -++|+.+++-||.||++|.+.++++.+.+..+..+|+....   ......||||++..
T Consensus       166 ~~Eaa~LavLPqaP~~~~~~~~dr~~~~a~~AR~~ll~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~p~~APH~~~~l  242 (786)
T TIGR02073       166 LAEAALLAVLPQAPSARRLKTTDRLPKAAKAARDRLLDRMAEQGVADSEQVALAALEPLPAEP---EKLPQLAPHFAQKL  242 (786)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHH
T ss_conf             899999999731700226642561489999999999998752387678999999850330133---24676148999999


Q ss_pred             HHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             85311001243312573289852488898999999998767654443210000001211248877863332013355541
Q gi|254780752|r  278 RRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDI  357 (817)
Q Consensus       278 ~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (817)
                      .++-.+.+      .-+=+|.||||.+||..+|+.+++++..+.++                                  
T Consensus       243 ~~~~~~~~------~~~s~i~sTlD~~LQ~~~E~~~~~~~~~l~~~----------------------------------  282 (786)
T TIGR02073       243 LRARPEIA------SVDSKIVSTLDADLQRRLEELARRYLSALRPR----------------------------------  282 (786)
T ss_pred             HHHHHCCC------CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC----------------------------------
T ss_conf             98411006------77873676247447999999999999861868----------------------------------


Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             04765214402676520334431000024442348889665200112233321000013646310123566515775225
Q gi|254780752|r  358 AVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIP  437 (817)
Q Consensus       358 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p  437 (817)
                                                     +                                                
T Consensus       283 -------------------------------g------------------------------------------------  283 (786)
T TIGR02073       283 -------------------------------G------------------------------------------------  283 (786)
T ss_pred             -------------------------------C------------------------------------------------
T ss_conf             -------------------------------8------------------------------------------------


Q ss_pred             CCCCEEEEECCCCCCCEEEEECCCCCC-CCCCC--CCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCE
Q ss_conf             553116640656666117872132344-43320--012335665310000127887402-46654456523788037852
Q gi|254780752|r  438 KVQGGLIAMDPRTGRILATIGGFSYSQ-SEFNR--STQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKI  513 (817)
Q Consensus       438 ~~q~a~V~id~~TG~IlA~vGg~d~~~-~~~Nr--A~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~  513 (817)
                      ..+.|++|||+.+|+|+|+||+-||.+ +.++.  .++|.|+||||+|||+|+.|||+| +.|.|++.|+|..|.++.+.
T Consensus       284 i~~~A~lVvD~~s~~V~A~vGS~df~d~~~~gqVD~v~A~RSpGStLKPFlYaLald~G~~~p~slL~D~P~~fg~~SG~  363 (786)
T TIGR02073       284 ISNLAILVVDNRSGAVLAYVGSADFFDDSNAGQVDGVRAIRSPGSTLKPFLYALALDDGLIHPDSLLKDVPLRFGDVSGL  363 (786)
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCCC
T ss_conf             30257889971798269998245676613050461476676678643189998565652112010101012101472333


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCC----CC-CCCCCCCCCCCCEEHHHHHHHHH
Q ss_conf             66641276544225666666530440225887625972352110135565----55-67665634451000037767432
Q gi|254780752|r  514 WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIY----DK-MLPVLPMSLGAGETTVLRMVSAY  588 (817)
Q Consensus       514 ~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~----~~-~~~~~s~alG~~~vtpl~la~ay  588 (817)
                      |.|+||+..|+|+|++++||.+|+|||||++++++|.++++++++++|+.    +. ..+.+|++||+.|+|++|||++|
T Consensus       364 Y~P~Nf~~~F~G~V~v~~AL~~SLNiPAV~ll~~~g~~~f~~~L~~~G~~~~~~~~~~~yGLSL~LGG~e~tL~dLa~lY  443 (786)
T TIGR02073       364 YAPENFDKTFHGPVPVREALARSLNIPAVRLLERLGPPRFASFLRQAGLKLLKPKSRDYYGLSLILGGAEITLQDLANLY  443 (786)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCHHHHHHHH
T ss_conf             26788777646776399986430671489999742926899999970565578000025760131230174489999999


Q ss_pred             HHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC-CCE
Q ss_conf             2015744035446667641024430133585323556666666554554675543535899999999999998734-804
Q gi|254780752|r  589 AVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH-GTA  667 (817)
Q Consensus       589 a~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~-GTg  667 (817)
                      ++|||+|...+|+....-.          +...           ...-.--.-..+++|+..|+++.+||++.-.. .+.
T Consensus       444 ~~LA~~G~~~plr~~~~~~----------~~~~-----------~~~~keGnf~~rll~~~aa~~~~diL~~~~~p~~~~  502 (786)
T TIGR02073       444 AMLANQGLSGPLRFLQADA----------KRPE-----------REESKEGNFGTRLLSPGAAWIVLDILKDRPRPEDTL  502 (786)
T ss_pred             HHHHHCCCCCCCCCCCCCC----------CCCC-----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9997426665742133545----------6764-----------124666766887578888999999960378842113


Q ss_pred             E-H-HCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC----
Q ss_conf             3-2-105996046760467897022798456987999998266898278986442121799999999997489830----
Q gi|254780752|r  668 T-G-KVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSS----  741 (817)
Q Consensus       668 ~-~-a~~~~~~iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~----  741 (817)
                      . . +.....++|.|||||.++||||.|||++.||++||||+-+++++ .+.+|...|+|||.+|...+.+..+..    
T Consensus       503 ~~~~~~~~~~~~AwKTGTSyG~RDAWa~G~~~~Yti~VWvGn~~G~p~-~~~~G~~~AaPllf~i~d~l~~~~~~~~d~~  581 (786)
T TIGR02073       503 PKSSALSTRLPLAWKTGTSYGFRDAWAAGVSGRYTIGVWVGNFDGKPN-PGFIGAAAAAPLLFDILDALQASEASTRDRV  581 (786)
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEEEECCCCCCC-CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             100235566535776266478722168610587689997456899999-6402002344379999999763355312467


Q ss_pred             -CCCCCC----CCEEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             -067977----716998403227758899976089953178999865677776
Q gi|254780752|r  742 -RFVAPP----GMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGPAETYTVIDE  789 (817)
Q Consensus       742 -~f~~P~----~iv~~~i~~~sG~la~~~~~~~~~e~f~~gt~P~~~~~~~~~  789 (817)
                       +.|.|.    .|.++.+|..+|.++...|+.....+|.++..|.+.|..+..
T Consensus       582 ~~~P~~~~~~~~v~~~~~~~~~~~~~~~~c~~~~~~~~~p~~~p~~~~~~~~~  634 (786)
T TIGR02073       582 PELPRPLLVNIIVKRVPVGLVSGELKALPCPEQISTWFLPGSSPPKLSELHKP  634 (786)
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCC
T ss_conf             78878430106888504666242101334224333321368886034100124


No 9  
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=903.39  Aligned_cols=561  Identities=31%  Similarity=0.448  Sum_probs=491.2

Q ss_pred             CCEEEECCCCCEEEEEEC---CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             877999078949666612---56046417996978885454332146113387379999999999863204788677611
Q gi|254780752|r   51 VTTRIHAGNGALMAEYAR---ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGAS  127 (817)
Q Consensus        51 ~~t~iyd~dG~~i~~~~~---~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgS  127 (817)
                      .+.+|+|+||+++..|.+   ++|.+++++||||.+++|+|+.||++||.|+|||+.+++||+++++.   +|++++|||
T Consensus        35 ~S~~V~DrdG~~Lr~f~~~Dg~wR~~~~l~eVsp~fi~ali~yED~~Fy~H~GVdp~al~RA~~q~~~---~G~vvsGgS  111 (733)
T COG4953          35 YSRVVLDRDGTLLRAFADKDGEWRIPTPLEEVSPQFIEALINYEDKRFYWHPGVDPLALLRAAWQTLT---SGRVVSGGS  111 (733)
T ss_pred             CCCEEECCCCCEEEEEECCCCCEEEECCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CCCCCCCCC
T ss_conf             21225647997844042688727830654868989999999754433442479898999999999986---186245741


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEE
Q ss_conf             47999888877088832999999999999998660799999997201426743310999999873542344030271254
Q gi|254780752|r  128 TITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYL  207 (817)
Q Consensus       128 TITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~L  207 (817)
                      |||||+||.+..-+ ||+.-|++|++.|++||.+|||+|||++|||.++||+|.+||+|||..||||++++||++|+|+|
T Consensus       112 TlTMQvARlleP~~-Rtl~gK~~qi~rAiqLE~~lSK~EIL~lYLn~aPyGgNieGv~AAS~aYFgk~~~~Ls~aEAalL  190 (733)
T COG4953         112 TLTMQVARLLEPRP-RTLGGKIRQIWRAIQLESRLSKREILELYLNRAPYGGNIEGVRAASLAYFGKEPKRLSLAEAALL  190 (733)
T ss_pred             HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHH
T ss_conf             57889998727677-77478899999999999732999999999742887874277788899982898243688888998


Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             44015764332111114667899888766654201112568887530111244543222345715679988531100124
Q gi|254780752|r  208 AALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGE  287 (817)
Q Consensus       208 Agi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge  287 (817)
                      |.|||+|++.+|.+||++++++||+||++|+.+|.++++|+..+..+++......   ....||||....+.+       
T Consensus       191 avLPq~P~~~rpdr~~~~a~~AR~~vL~rm~~~g~~~~~~~~~a~le~v~~~~~~---~p~~APhfa~~l~~~-------  260 (733)
T COG4953         191 AVLPQNPERRRPDRNPEAAEAARNRVLTRMAVQGVWSEEEAKRARLEPVPNRRRQ---LPFLAPHFAFRLLNQ-------  260 (733)
T ss_pred             HHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH---CCCCCHHHHHHHHHC-------
T ss_conf             7566881121875168999999999999999826777889887524655552010---330038899999852-------


Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             33125732898524888989999999987676544432100000012112488778633320133555410476521440
Q gi|254780752|r  288 KALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSH  367 (817)
Q Consensus       288 ~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  367 (817)
                         +..+=+|+||||.++|+..|+.+++.....                                               
T Consensus       261 ---~~~~~~I~tTLd~~lQr~lE~~ar~~~~~l-----------------------------------------------  290 (733)
T COG4953         261 ---YPKGDIIVTTLDANLQRRLEEQARDYASRL-----------------------------------------------  290 (733)
T ss_pred             ---CCCCCEEEEECCHHHHHHHHHHHHHHHHCC-----------------------------------------------
T ss_conf             ---999881565017558999999999998514-----------------------------------------------


Q ss_pred             EEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEC
Q ss_conf             26765203344310000244423488896652001122333210000136463101235665157752255531166406
Q gi|254780752|r  368 ITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMD  447 (817)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id  447 (817)
                                                                                          -+...+|+++||
T Consensus       291 --------------------------------------------------------------------~~~~saAvlvvD  302 (733)
T COG4953         291 --------------------------------------------------------------------GPRNSAAVLVVD  302 (733)
T ss_pred             --------------------------------------------------------------------CCCCCEEEEEEE
T ss_conf             --------------------------------------------------------------------876642699996


Q ss_pred             CCCCCCEEEEECCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEEEEEECCCCC
Q ss_conf             566661178721323444---3320012335665310000127887402-466544565237880378526664127654
Q gi|254780752|r  448 PRTGRILATIGGFSYSQS---EFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIWKPENYSKNF  523 (817)
Q Consensus       448 ~~TG~IlA~vGg~d~~~~---~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~N~~~~~  523 (817)
                      ++||+|+|+||+.||.+.   ..+.-+++.|+||||+|||+|+.|||+| +.|.|++.|.|..|.+    |+|+||+..|
T Consensus       303 ~~t~eVla~VGS~d~fd~~r~G~idm~~a~RSPGStLKPFiY~LA~D~GLI~p~Tll~D~P~~fg~----YrP~Nfd~~F  378 (733)
T COG4953         303 NRTMEVLAYVGSADFFDASRSGHIDMVRALRSPGSTLKPFVYGLAFDQGLIHPETLLKDVPTRFGD----YRPENFDSNF  378 (733)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCC
T ss_conf             577405788425455673213634311330388530003665543014654653114678701067----5886666556


Q ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEE
Q ss_conf             4225666666530440225887625972352110135565556----766563445100003776743220157440354
Q gi|254780752|r  524 SGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM----LPVLPMSLGAGETTVLRMVSAYAVFANGGKQIR  599 (817)
Q Consensus       524 ~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~----~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~  599 (817)
                      +|+|++|+||.+|+|+|+|++++++|++.+...+++.|+.-..    .+.+|+.||+.++|+.|||++|++|||+|...+
T Consensus       379 ~G~VsvreAL~~SLNiPAV~lLe~~gp~rf~~rl~~ag~~L~~P~~~~~GLsLiLGg~gi~L~dLa~lYa~lAn~G~~~~  458 (733)
T COG4953         379 HGPVSVREALIKSLNIPAVRLLEAVGPPRFAARLRQAGVHLYLPEGAAPGLSLILGGAGITLEDLAQLYAALANQGKAGP  458 (733)
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEC
T ss_conf             67400999998743862999998739398999999679987789766887258855776649999999999861894310


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEE
Q ss_conf             46667641024430133585323556666666554554675543535899999999999998734804321059960467
Q gi|254780752|r  600 PSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAG  679 (817)
Q Consensus       600 P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaG  679 (817)
                      -+...             .                  ......++.+|+.+|+++.++|.++..-|+...+...-+|||.
T Consensus       459 L~~~~-------------~------------------~~~~~~~~l~s~~Aaw~i~dIl~~~~~P~~~~~~~~~~~piaw  507 (733)
T COG4953         459 LRDTL-------------D------------------DDPLTERTLLSPGAAWQILDILSDVARPGLPNGALPSVRPIAW  507 (733)
T ss_pred             CCCCC-------------C------------------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
T ss_conf             43467-------------8------------------7888786356860279999998504798865667665665057


Q ss_pred             EECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHC
Q ss_conf             60467897022798456987999998266898278986442121799999999997489830067977716998403227
Q gi|254780752|r  680 KTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTG  759 (817)
Q Consensus       680 KTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG  759 (817)
                      |||||.++||+|-|||+++||++||||.-|++++ .+.+|-..|+|+|.++|.. +.-.+...+.+++++++..||..+|
T Consensus       508 KTGTSyGyRDAWsvG~~g~Y~l~VWvGr~dg~~~-~g~~G~~~AaPLlf~v~~~-~~~~~~~~~~p~p~~~~~~i~~~p~  585 (733)
T COG4953         508 KTGTSYGYRDAWSVGVFGRYVLGVWVGRFDGTPV-PGLSGVATAAPLLFQVNNI-IARSGRLAELPRPGLVQLNIICVPG  585 (733)
T ss_pred             ECCCCCCCCCCEEECCCCCEEEEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             4277666533146323586589999747999847-7601423456789988888-6426665567885200035433666


Q ss_pred             CCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             7588999760899531789998656
Q gi|254780752|r  760 MLSKKGDPDTIIEAFKPGTGPAETY  784 (817)
Q Consensus       760 ~la~~~~~~~~~e~f~~gt~P~~~~  784 (817)
                      ..+.+.|+  .  ||++|..|..-.
T Consensus       586 ~~~~~~~~--~--~~~dg~~P~t~~  606 (733)
T COG4953         586 GAATPDVD--L--LFLDGKYPITLS  606 (733)
T ss_pred             CCCCCCCC--E--EECCCCCCCCHH
T ss_conf             64467776--1--211577883022


No 10 
>PRK13481 glycosyltransferase; Provisional
Probab=100.00  E-value=0  Score=544.53  Aligned_cols=183  Identities=37%  Similarity=0.616  Sum_probs=176.9

Q ss_pred             CCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf             25604641799697888545433214611338737999999999986320478867761147999888877088832999
Q gi|254780752|r   68 RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDR  147 (817)
Q Consensus        68 ~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~R  147 (817)
                      .|+|.+|++|+||++|++||||+||+|||+|+|||++||+||++.|+.    |+.+|||||||||||||+|+++|||+.|
T Consensus        77 e~kr~~V~~d~IP~~l~~A~IA~ED~rFy~H~GvD~~~i~RA~~~nl~----~~~~qGGSTITQQlaKn~~l~~ert~~R  152 (269)
T PRK13481         77 ENKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALFSTIS----DRDVQGGSTITQQVVKNYFYDNDRSFTR  152 (269)
T ss_pred             HHCCCEECHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----CCCCCCCCHHHHHHHHCCCCCCCCCHHH
T ss_conf             437856157978999984135697485235879899999999999974----7988863289999997505678777999


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC-------CHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             99999999999866079999999720142674331099999987354-------23440302712544401576433211
Q gi|254780752|r  148 KIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNK-------SVSELTIEEAAYLAALPKGPSNYDPF  220 (817)
Q Consensus       148 K~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K-------~~~dLtl~EaA~LAgi~~~Ps~y~P~  220 (817)
                      |++|+++|++||++|||+||||+|||+||||+|+|||++||+.||||       +++|||++|||+||||+|+|+.|||.
T Consensus       153 KikE~~lA~~lE~~~sK~eILe~YLN~iy~G~~~yGIeaAA~~YFGk~~~k~nk~~s~Ltl~EaA~LAgl~~aPs~YnP~  232 (269)
T PRK13481        153 KVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNIN  232 (269)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999864599999999986715688709999999998588812247893549999999984217786667987


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             1114667899888766654201112568887530
Q gi|254780752|r  221 RKNKAAIARRNWVIDRMEENGYISQEQALVAKQK  254 (817)
Q Consensus       221 ~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~  254 (817)
                      ++|+++++||+.||.+|+++||||++||++|+++
T Consensus       233 ~~~~~a~~Rr~~VL~~M~~~g~It~~qy~~A~ae  266 (269)
T PRK13481        233 NMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQ  266 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             7989999999999999998699999999999976


No 11 
>PRK00056 mtgA monofunctional biosynthetic peptidoglycan transglycosylase; Provisional
Probab=100.00  E-value=0  Score=489.88  Aligned_cols=225  Identities=32%  Similarity=0.447  Sum_probs=185.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCH
Q ss_conf             78999999999999999999999999999998704698978851247788779990789496666125604641799697
Q gi|254780752|r    2 YYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPS   81 (817)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~   81 (817)
                      .|-+.++++|++.++++++++.++.+ +++..   ..|+.+.+...++ ..+...+..|..+      +|+||++|+||+
T Consensus         2 ~rw~~r~~~~~~~~~~~~~~~~~~~v-~~~~~---~~pp~t~~m~~r~-~~~~~~~~~~~~~------~r~~v~~~~i~~   70 (226)
T PRK00056          2 LRWLRRLLRRLLRALLALALFSLLQI-ALFRF---VPPPFSAVMVERP-VSAWLLGDFGAVL------HRQWVPYDQISP   70 (226)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC---CCCCCCHHHHHCH-HHHHHCCCCCCCC------EEEEECHHHCCH
T ss_conf             62799999999999999999999987-76420---1899888898543-5572106788750------223777898799


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88854543321461133873799999999998632047886776114799988887708883299999999999999866
Q gi|254780752|r   82 HVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKA  161 (817)
Q Consensus        82 ~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~  161 (817)
                      +|++|+||+||+|||+|+|||+.+|.||+..|++   +|+..|||||||||||||+|++++||+.||++|+++|++||+.
T Consensus        71 ~l~~AviA~ED~rF~~H~GvD~~~i~rA~~~n~~---~g~~~~GgSTITqQlaKnlfl~~~rs~~RK~~E~~~a~~lE~~  147 (226)
T PRK00056         71 NLKRAVIAAEDQKFPEHWGFDVDAIEKALEHNER---GGRRIRGASTISQQTAKNLFLWDGRSWVRKGLEAPLTLMIELV  147 (226)
T ss_pred             HHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9998899996474764789899999999999985---6994888467999999987148877699999999999999976


Q ss_pred             HCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             0799999997201426743310999999873542344030271254440157643321111146678998887666542
Q gi|254780752|r  162 YDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN  240 (817)
Q Consensus       162 ~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~  240 (817)
                      ||||||||+|||.||||+|+|||++||++||||+++|||++|||+||||+|+|++|||.++++.+++|+++||++|.+.
T Consensus       148 ~sK~~ILe~YLN~v~~G~g~yGv~aAa~~YF~k~~~~Lt~~eaA~LA~il~~P~~y~p~~~~~~~~~R~~~IL~~M~ql  226 (226)
T PRK00056        148 WSKRRILEVYLNIAEWGDGVFGAEAAARHYFGKPASKLSASQAALLAAVLPNPRRFDANRPSPYVRRRAAWILRRMRQL  226 (226)
T ss_pred             CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             4999999999767572886678999999982999577999999999621779776799999899999999999998509


No 12 
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=100.00  E-value=0  Score=463.29  Aligned_cols=268  Identities=31%  Similarity=0.488  Sum_probs=225.9

Q ss_pred             CCEEEEECCCCCCCEEEEECCCCCCCC---------------------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCC
Q ss_conf             311664065666611787213234443---------------------320012335665310000127887402-4665
Q gi|254780752|r  440 QGGLIAMDPRTGRILATIGGFSYSQSE---------------------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPA  497 (817)
Q Consensus       440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------------------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~  497 (817)
                      .|++|+|||+||+||||+.-++|+.+.                     +|||++..++||||||||+.++|||+| ++|+
T Consensus       248 ~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe~g~i~~~  327 (592)
T TIGR03423       248 RGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALEEGVITPD  327 (592)
T ss_pred             CEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             35699996688848999617887702303787988999874396654212011224468726899999999975999998


Q ss_pred             CCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---------
Q ss_conf             44565237880378526664127654422566666653044022588762597235211013556555676---------
Q gi|254780752|r  498 SVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLP---------  568 (817)
Q Consensus       498 t~~~D~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~---------  568 (817)
                      ++++|.. .+..++..|  +||.+..+|.+++++||++|||+.++++++++|.+++.+++++|||.++..-         
T Consensus       328 ~~~~~~g-~~~~~~~~i--~d~~~~~~g~lt~~~~l~~SsNvg~~~ia~~lg~~~~~~~~~~fGfg~~tgidlp~E~~G~  404 (592)
T TIGR03423       328 TRINCPG-YFQLGGRRF--RCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSGL  404 (592)
T ss_pred             CEEECCC-CCCCCCCCC--CCCCCCCCCEECHHHHHHEEECHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             5896078-302598523--0478888630145544103833999789886187889999984678877689987774886


Q ss_pred             -------------------CCCCCCCCC--EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             -------------------656344510--00037767432201574403544666764102443013358532355666
Q gi|254780752|r  569 -------------------VLPMSLGAG--ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNY  627 (817)
Q Consensus       569 -------------------~~s~alG~~--~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~  627 (817)
                                         ..++++|++  .+||||||+||++|||+|++++||+|++|.|.+|+++.+.++.+      
T Consensus       405 lp~~~w~~~~~~~~~~~~~~~~~siGQG~i~~TplQla~a~~~iaN~G~~~~P~lv~~i~d~~g~~~~~~~~~~------  478 (592)
T TIGR03423       405 VPSREWKRKRFGQPWYPGDTLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQETEPEV------  478 (592)
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCC------
T ss_conf             89968976420577774423354103674315889999999988619838521899975168885664048754------


Q ss_pred             CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC--CCEEHHCC-CCCCEEEEECCCCCC-----------------
Q ss_conf             6666554554675543535899999999999998734--80432105-996046760467897-----------------
Q gi|254780752|r  628 DTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH--GTATGKVR-LNRPVAGKTGTTSSY-----------------  687 (817)
Q Consensus       628 ~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~--GTg~~a~~-~~~~iaGKTGTt~~~-----------------  687 (817)
                                   ....++|+++|..|++||+.||+.  |||+++.. .++.|||||||++..                 
T Consensus       479 -------------~~~~~is~~ta~~v~~~m~~VV~~~~GTg~~a~~~~gy~vaGKTGTAq~~~~~~~~~~~~~~~~~~~  545 (592)
T TIGR03423       479 -------------LPPLPISPENLDVVREGMRDVVNEPRGTARRARLGLDYKMAGKTGTAQVVSLKQGEKYDAEQIPERL  545 (592)
T ss_pred             -------------CCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -------------5665789999999999999983289947575248999879999636762457887532555455456


Q ss_pred             C-CEEEEEEC----CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             0-22798456----98799999826689827898644212179999999999748
Q gi|254780752|r  688 R-DTWFIGYT----PTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKN  737 (817)
Q Consensus       688 ~-D~WfvG~t----p~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~  737 (817)
                      + .+||+||.    |+|++.|-|  |+      ..+||.+|||||++||+.++++
T Consensus       546 ~~~asFvG~~P~~~P~~~v~V~v--~~------~~~Gg~~AaPvf~~I~e~y~~~  592 (592)
T TIGR03423       546 RDHALFVAFAPYDNPEIAVAVIV--EH------GGGGSSAAAPIARKIMDAYFLG  592 (592)
T ss_pred             CCCEEEEEEEECCCCEEEEEEEE--EC------CCCCHHHHHHHHHHHHHHHHCC
T ss_conf             77779999978789879999999--68------9951148999999999998576


No 13 
>pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family.
Probab=100.00  E-value=0  Score=468.61  Aligned_cols=258  Identities=31%  Similarity=0.469  Sum_probs=223.4

Q ss_pred             CEEEEECCCCCCCEEEEECCCCCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEE
Q ss_conf             11664065666611787213234443-----320012335665310000127887402-466544565237880378526
Q gi|254780752|r  441 GGLIAMDPRTGRILATIGGFSYSQSE-----FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIW  514 (817)
Q Consensus       441 ~a~V~id~~TG~IlA~vGg~d~~~~~-----~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~  514 (817)
                      ||+|+|||+||+||||+|+++|+.++     +|||+|+.||||||||||+|++|||+| ++|++.++|.+... .+  -|
T Consensus         1 Ga~Vv~d~~TG~IlAm~~~p~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaaLe~g~~~~~~~~~~~~~~~-~~--~~   77 (296)
T pfam00905         1 GSAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALDNGILKPEETFDDWPGLP-VG--GY   77 (296)
T ss_pred             CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CC--CC
T ss_conf             9599998999929999868988978766422218766865884899999999999879988761114776434-79--93


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-----------------CCCCCCCC-
Q ss_conf             664127654422566666653044022588762597235211013556555676-----------------65634451-
Q gi|254780752|r  515 KPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLP-----------------VLPMSLGA-  576 (817)
Q Consensus       515 ~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~-----------------~~s~alG~-  576 (817)
                      .++||++.++|.++|++||++|||+++++|++++|.+++.+++++|||..+...                 ..++++|+ 
T Consensus        78 ~~~n~~~~~~G~~tl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~~~~~~~~~~~~G~G  157 (296)
T pfam00905        78 TIKDWNQDGSGTITLREALEYSSNWYFQQLALKLGKDKLRDYLKKFGYGNKTGIGLPGESAGILPPRYRGDGATTAWGQG  157 (296)
T ss_pred             CEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECC
T ss_conf             22468999887554999998509677899999708478999999718887768888644356677755431010101067


Q ss_pred             -CEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf             -0000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r  577 -GETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT  655 (817)
Q Consensus       577 -~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~  655 (817)
                       ..+||||||++|++|||+|++++||+|++|++.+++..                          ..+|++|++++++|+
T Consensus       158 ~~~vTplq~a~aya~iAN~G~~~~p~~v~~i~~~~~~~~--------------------------~~~~~is~~~a~~v~  211 (296)
T pfam00905       158 SLTITPLQQAQAYATIANNGKLVPPHIVKSIKKLVDPKV--------------------------LGKLPISKSTAEKVK  211 (296)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCC--------------------------CCCCCCCHHHHHHHH
T ss_conf             662269999999999871996837699950014789822--------------------------234038999999999


Q ss_pred             HHHHHHHHCCCEEHHCCCCCCEEEEECCCC---------CCCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             999998734804321059960467604678---------9702279845----698799999826689827898644212
Q gi|254780752|r  656 SMLEGVIKHGTATGKVRLNRPVAGKTGTTS---------SYRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTL  722 (817)
Q Consensus       656 ~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~---------~~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~  722 (817)
                      +||+.||+.||++ +...++++||||||++         +.+|+||+||    +|+|+++||++  ++.  +.+.+|+..
T Consensus       212 ~~l~~vv~~gt~~-~~~~~~~vaGKTGTaq~~~~~~~~~~~~~awFvG~~P~~~p~~~v~V~v~--~~~--~~~~~Gg~~  286 (296)
T pfam00905       212 DMLKLVVNDGGGA-AAVPGYKVAGKTGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLID--DPK--GDGGAGGKV  286 (296)
T ss_pred             HHHHHHCCCCCCC-CCCCCCCEEEEEECCEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEC--CCC--CCCCCHHHH
T ss_conf             9998507788743-34689726899825366588888788658999999987998299999986--689--899860689


Q ss_pred             CHHHHHHHHH
Q ss_conf             1799999999
Q gi|254780752|r  723 TAPIFNAFMK  732 (817)
Q Consensus       723 a~piw~~~m~  732 (817)
                      |+|||++||+
T Consensus       287 AaPi~~~i~~  296 (296)
T pfam00905       287 AAPIFKDILE  296 (296)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999869


No 14 
>pfam00912 Transgly Transglycosylase. The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyses the polymerisation of murein glycan chains.
Probab=100.00  E-value=0  Score=451.96  Aligned_cols=174  Identities=48%  Similarity=0.821  Sum_probs=168.9

Q ss_pred             CCCEEEEEECCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             89496666125604641799697888545433214611338737999999999986320478867761147999888877
Q gi|254780752|r   59 NGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFL  138 (817)
Q Consensus        59 dG~~i~~~~~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~  138 (817)
                      ||++|++++.++|.+|++|+|||+|++|+||+||+|||+|+|||+.+|+||++.|++   +|+.++||||||||||||+ 
T Consensus         1 ~g~~l~~~~~~~r~~v~~~~ip~~l~~A~ia~ED~~F~~H~Gid~~~i~rA~~~~~~---~~~~~~GgSTITqQl~k~~-   76 (174)
T pfam00912         1 DGTLLATFGEENRVYVPLDEIPPHLINAVVAIEDRRFYSHPGVDPKGIARAALSNLR---SGGIVQGGSTITQQLAKNL-   76 (174)
T ss_pred             CCCCHHHHHHCCCEEECHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCCCHHHHHHHHC-
T ss_conf             976233332006758328996999996842214864243888687899999999831---5898888463999998762-


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCC
Q ss_conf             08883299999999999999866079999999720142674331099999987354234403027125444015764332
Q gi|254780752|r  139 LTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYD  218 (817)
Q Consensus       139 l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~  218 (817)
                        .+||+.||++|+++|++||+.|||+||||+|||.||||+|+|||++||++||||+++|||++|||+||||+|+|+.||
T Consensus        77 --~~rt~~RK~~E~~~a~~lE~~~sK~eILe~YLN~v~~G~~~~Gi~aAs~~yFgk~~~~L~~~eaA~La~l~~~P~~y~  154 (174)
T pfam00912        77 --TERTLSRKLREAILALRLERRYSKDEILELYLNTVYFGGGIYGVEAAARAYFGKPPSDLTLAEAALLAGLLPAPSRYN  154 (174)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf             --678899999999999999987798999999997646188874899999999487703199999999962178966479


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q ss_conf             11111466789988876665
Q gi|254780752|r  219 PFRKNKAAIARRNWVIDRME  238 (817)
Q Consensus       219 P~~np~~a~~Rr~~VL~~M~  238 (817)
                      |.++++++.+||+.||++|+
T Consensus       155 p~~~~~~~~~R~~~vl~~m~  174 (174)
T pfam00912       155 PLRNPERAKKRRNLVLKRMV  174 (174)
T ss_pred             CCCCHHHHHHHHHHHHHHHC
T ss_conf             98898999999999998449


No 15 
>PRK10795 penicillin-binding protein 2; Provisional
Probab=100.00  E-value=0  Score=417.11  Aligned_cols=268  Identities=22%  Similarity=0.333  Sum_probs=211.9

Q ss_pred             CCEEEEECCCCCCCEEEEECCCCCCCC---------------------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCC
Q ss_conf             311664065666611787213234443---------------------320012335665310000127887402-4665
Q gi|254780752|r  440 QGGLIAMDPRTGRILATIGGFSYSQSE---------------------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPA  497 (817)
Q Consensus       440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------------------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~  497 (817)
                      .||+|+|||+||+||||+.-++|+.+.                     +|||+++.++||||||||+.++|||.| ++|+
T Consensus       270 ~gavVvmd~~TGeILAmaS~P~fdpN~~~~~~~~~~~~~~~~~~~~p~~Nra~~~~yePGStfK~~t~~aaLe~g~i~~~  349 (619)
T PRK10795        270 RAAVVVTDPRTGGILALVSNPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRN  349 (619)
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCHHEECCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             72599996798848999816877846641577878899863386765202110116689860699999999974999999


Q ss_pred             CCCCCCE-EEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCC---------
Q ss_conf             4456523-788037852666412765442256666665304402258876259723521101355655567---------
Q gi|254780752|r  498 SVIMDAP-IEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKML---------  567 (817)
Q Consensus       498 t~~~D~p-~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~---------  567 (817)
                      +.+.|.. +.+.+...  ..++|....+|.+++++||++|||+.+++++.++|.+++.+++++|||.++..         
T Consensus       350 ~~~~~~g~~~~~~~~~--~~~~~~~~g~G~~~~~~al~~SsNv~~~~i~~~lg~~~~~~~~~~fG~g~~tgi~lp~E~~G  427 (619)
T PRK10795        350 TSLFDPGWWQLPGSEK--RYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSG  427 (619)
T ss_pred             CEEEECCCEEECCCCC--CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             7796099337678862--25668889997400888988635599999988705225544555327887668887665578


Q ss_pred             --C-----------------CCCCCCCCC--EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             --6-----------------656344510--0003776743220157440354466676410244301335853235566
Q gi|254780752|r  568 --P-----------------VLPMSLGAG--ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN  626 (817)
Q Consensus       568 --~-----------------~~s~alG~~--~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~  626 (817)
                        |                 ..++++|++  .+||||||++|++|||+|++++||+|+++.+ +|+++...++..     
T Consensus       428 ~~p~~~w~~~~~~~~w~~~~~~~~siGQG~~~~TPlQla~~~~aiaN~G~~~~P~lv~~~~~-~~~~v~~~~~~~-----  501 (619)
T PRK10795        428 NMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAE-DGKQVPWVQPHE-----  501 (619)
T ss_pred             CCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC-CCCEEEECCCCC-----
T ss_conf             67875665420246666454555412042556359999999999963980863479987514-896642036665-----


Q ss_pred             CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH--CCCEEHHCC-CCCCEEEEECCCCC-----------------
Q ss_conf             6666655455467554353589999999999999873--480432105-99604676046789-----------------
Q gi|254780752|r  627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK--HGTATGKVR-LNRPVAGKTGTTSS-----------------  686 (817)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~--~GTg~~a~~-~~~~iaGKTGTt~~-----------------  686 (817)
                                    .....++.++...+.++|+.||+  .|||+++.. .++.|||||||++-                 
T Consensus       502 --------------~~~~~~~~~~~~~~~~~m~~Vv~~~~GT~~~~~~~~~~~vaGKTGTAqv~~~~~~~~~~~~~~~~~  567 (619)
T PRK10795        502 --------------PPVGDIHSGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAER  567 (619)
T ss_pred             --------------CCCCCCCHHHHHHHHHHHHHHEECCCCEEEHHCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCC
T ss_conf             --------------544555778999999999986727995256000589967999825324636678753234334545


Q ss_pred             CC-CEEEEEEC----CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             70-22798456----987999998266898278986442121799999999997489
Q gi|254780752|r  687 YR-DTWFIGYT----PTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNI  738 (817)
Q Consensus       687 ~~-D~WfvG~t----p~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~  738 (817)
                      .+ .+||+||.    |+|+++|-|  |+      ++ +|..|+||++++|++++-+-
T Consensus       568 ~~~hawf~gfaP~d~P~~av~V~v--e~------gg-~G~~aapi~r~i~~~~l~~~  615 (619)
T PRK10795        568 LRDHKLMTAFAPYNNPQVAVAIIL--EN------GG-AGPAVGTIMRQILDHIMLGD  615 (619)
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEE--EC------CC-CCCHHHHHHHHHHHHHHCCC
T ss_conf             677759999977689889999999--79------98-40268999999999996489


No 16 
>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=397.10  Aligned_cols=267  Identities=32%  Similarity=0.530  Sum_probs=209.1

Q ss_pred             CCEEEEECCCCCCCEEEEECCCCCCCCC--------------CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf             3116640656666117872132344433--------------20012335665310000127887402466544565237
Q gi|254780752|r  440 QGGLIAMDPRTGRILATIGGFSYSQSEF--------------NRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPI  505 (817)
Q Consensus       440 q~a~V~id~~TG~IlA~vGg~d~~~~~~--------------NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~  505 (817)
                      +|++|+|||+||+||||+.-++|+.+.|              |||++..++||||||||+.++||++|   ++.+.|.+.
T Consensus       267 ~g~~vv~dp~tGeILAmas~P~ydpn~~~~~~~~~~~~~~~~n~a~~~~yePGStfK~~t~aaaL~~g---~~~~~~~~~  343 (599)
T COG0768         267 GGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRKPLLNRAVTGTYEPGSTFKPITAAAALETG---NTGLFDPGS  343 (599)
T ss_pred             CEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCCCCCCCC
T ss_conf             04899981788848999568999986223321002334202447551704782108999999999769---985348985


Q ss_pred             EEECCCCEEEEEECCCCCCC----HHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC------------CC-
Q ss_conf             88037852666412765442----25666666530440225887625972352110135565556------------76-
Q gi|254780752|r  506 EVVSRGKIWKPENYSKNFSG----ASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM------------LP-  568 (817)
Q Consensus       506 ~~~~~~~~~~p~N~~~~~~G----~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~------------~~-  568 (817)
                      .+...+..  .+.|....++    .+++.+||++|||+.+++++..+|.+.+.+++++|||..+.            ++ 
T Consensus       344 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~al~~SsNv~f~~la~~~g~~~~~~~~~~fGfg~~t~idl~~e~~g~~p~~  421 (599)
T COG0768         344 VLDGNGPK--IRIWGRTGHDYGGRPLTLTEALQKSSNVGFAKLALRLGPDGLYDYLKKFGFGQKTGIDLPGETSGLLPSR  421 (599)
T ss_pred             EEECCCCE--EEECCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             47369861--6418815678776312899998870809999999985858899999876998755679866425657982


Q ss_pred             ---------CCCCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---------656344510-0003776743220157440354466676410244301335853235566666665545546
Q gi|254780752|r  569 ---------VLPMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEI  638 (817)
Q Consensus       569 ---------~~s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~  638 (817)
                               ..++++|++ .+||||||.||++|||+|++++||+|+++.+.++......+                    
T Consensus       422 ~~~~~~~~~~~~~siGQ~~~vTPlQla~~~a~iaN~G~~~~P~lv~~~~~~~~~~~~~~~--------------------  481 (599)
T COG0768         422 EPWRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPP--------------------  481 (599)
T ss_pred             HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCCC--------------------
T ss_conf             001367211244047874020899999999999629979425897124465554212466--------------------


Q ss_pred             CCCCCEECCHHHHHHHHHHHHHHHHCC---CEEHHCCCCCCEEEEECCCCCC-----------CCEEEEEEC----CCEE
Q ss_conf             755435358999999999999987348---0432105996046760467897-----------022798456----9879
Q gi|254780752|r  639 IDKREQVLDPMTAYQITSMLEGVIKHG---TATGKVRLNRPVAGKTGTTSSY-----------RDTWFIGYT----PTLV  700 (817)
Q Consensus       639 ~~~~~~v~s~~~a~~~~~~L~~vv~~G---Tg~~a~~~~~~iaGKTGTt~~~-----------~D~WfvG~t----p~~~  700 (817)
                       ....+++|++++..+.+||+.|++.|   ++..+...|++|||||||++-.           ..+||+||.    |+|+
T Consensus       482 -~~~~~~is~~~~~~v~~~m~~Vv~~~~gg~~~~a~v~g~~iaGKTGTAq~~~~~~~~y~~~~~~~~Fvg~aP~d~P~~~  560 (599)
T COG0768         482 -VLKKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGRYHAWFVGFAPADNPKYA  560 (599)
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCEEEEEEEEECCCCCEE
T ss_conf             -4345558999999999999987717877641104568952376501150334788863456534899997416899799


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             99998266898278986442121799999999997489
Q gi|254780752|r  701 VGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNI  738 (817)
Q Consensus       701 ~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~  738 (817)
                      ++|-|  |++..    .+|+..|+|++++||+.++..+
T Consensus       561 v~v~v--~~~~~----~~g~~~aapv~~~I~~~~~~~~  592 (599)
T COG0768         561 VAVLV--DNPGG----GYGGAVAAPVFKKIMERLLDYL  592 (599)
T ss_pred             EEEEE--ECCCC----CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999--77887----7623567999999999999973


No 17 
>TIGR02214 spoVD_pbp stage V sporulation protein D; InterPro: IPR011927    This entry describes the SpoVD family of homologs of the cell division protein FtsI, a penicillin binding protein. This family is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of SpoVD..
Probab=100.00  E-value=0  Score=370.43  Aligned_cols=271  Identities=27%  Similarity=0.408  Sum_probs=229.2

Q ss_pred             CEEEEECCCCCCCEEEEECCCCCCCCC---------------------CCCCCCCCCCCCCCHHHHHHHHHHCCC-C-CC
Q ss_conf             116640656666117872132344433---------------------200123356653100001278874024-6-65
Q gi|254780752|r  441 GGLIAMDPRTGRILATIGGFSYSQSEF---------------------NRSTQAMRQPGSCFKPIVYAAALDSGY-T-PA  497 (817)
Q Consensus       441 ~a~V~id~~TG~IlA~vGg~d~~~~~~---------------------NrA~~~~rqpGSt~KP~vy~~Ale~G~-t-p~  497 (817)
                      ..+++|||+||+||+|+.-++|+.+.+                     ||++...++|||+||.++.+|||+.|+ . -+
T Consensus       249 ~~i~vMnpknGeILGM~nrP~ydpn~p~~~s~~~~~kdesa~LQ~~WRN~~v~d~yEPGS~FKiiT~~AA~~eg~v~le~  328 (660)
T TIGR02214       249 VSIIVMNPKNGEILGMSNRPSYDPNDPRDKSPEVKRKDESAKLQKSWRNRVVSDAYEPGSIFKIITSSAAMEEGIVKLEK  328 (660)
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf             89999769997176520678878777430374360542036886501885011221698477999999997327400036


Q ss_pred             CCCCC-CEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC------
Q ss_conf             44565-23788037852666412765442256666665304402258876259723521101355655567665------
Q gi|254780752|r  498 SVIMD-APIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVL------  570 (817)
Q Consensus       498 t~~~D-~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~------  570 (817)
                      +.|+| .-.++.  +.  +-++|....||.-|+-+-|++|||+.|++|+++||.+++.+|+++|||.++..-+|      
T Consensus       329 d~FYd~G~~~vg--~~--~~kCWK~~GHG~qtF~~vv~NSCN~GF~elG~~LG~~~L~~Yi~~FGFG~~tGIdL~GEA~G  404 (660)
T TIGR02214       329 DKFYDDGSATVG--GK--KIKCWKPGGHGSQTFLEVVQNSCNVGFIELGERLGAEKLNEYIKKFGFGSKTGIDLPGEAAG  404 (660)
T ss_pred             CEEECCCEEEEC--CC--EEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEE
T ss_conf             501078414434--82--66767688695546478753277778998855407668999998428987688666774103


Q ss_pred             --------------CCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCC---CC-CCCCCCCCCCCCCCCCC
Q ss_conf             --------------6344510-00037767432201574403544666764102443---01-33585323556666666
Q gi|254780752|r  571 --------------PMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGK---TI-FNQEQRICDDCNYDTWN  631 (817)
Q Consensus       571 --------------s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~---vi-~~~~~~~~~~~~~~~~~  631 (817)
                                    ++++|+. .|||+|..+|.++.||||.+++||++++|.|.++|   +| .+..|.           
T Consensus       405 Il~n~~~v~pvdlAT~SfGQ~n~v~~iQ~~~A~~AvaNGG~L~~P~i~~e~~d~~~NG~~~v~~~f~P~-----------  473 (660)
T TIGR02214       405 ILKNLEKVGPVDLATISFGQANTVTPIQLMTAVNAVANGGKLIQPHIMKEISDKENNGRKVVDKKFEPE-----------  473 (660)
T ss_pred             EEECCCCCCCHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCC-----------
T ss_conf             341376556122543310520004778999999987516656613312202175789515887530770-----------


Q ss_pred             CCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEEEECCCCCC-----------CCEEEEEECC---
Q ss_conf             55455467554353589999999999999873480432105996046760467897-----------0227984569---
Q gi|254780752|r  632 GQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSY-----------RDTWFIGYTP---  697 (817)
Q Consensus       632 ~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~~~-----------~D~WfvG~tp---  697 (817)
                               ..++|+|++++..++.+|+.||..|||+.|.+.|+.|+|||||+|.-           -=+.||||.|   
T Consensus       474 ---------~~~~vv~~~~~~~l~~~LE~vVs~GsGk~AfIdGyrvGGKTGTAqKv~P~~G~Y~~g~YivSFvG~APa~d  544 (660)
T TIGR02214       474 ---------VKRKVVDKETTEKLRLALEKVVSKGSGKDAFIDGYRVGGKTGTAQKVKPEDGGYLEGEYIVSFVGFAPADD  544 (660)
T ss_pred             ---------EEEEECCHHHHHHHHHHHHCEEECCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf             ---------12353267789999886411451477756110346957730453444788893414866899864278898


Q ss_pred             -CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             -879999982668982789864421217999999999974898
Q gi|254780752|r  698 -TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIP  739 (817)
Q Consensus       698 -~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p  739 (817)
                       ++++-|-|  |+|++  ...+||-+|||+++++|+.++.-+.
T Consensus       545 P~v~~~V~v--D~P~~--~~~FGG~vAAPv~~~v~~d~l~~lG  583 (660)
T TIGR02214       545 PEVAVLVVV--DNPKG--VEQFGGLVAAPVVGEVFNDILNYLG  583 (660)
T ss_pred             CCEEEEEEE--ECCCC--CCCCCCEEECHHHHHHHHHHHHHCC
T ss_conf             847999998--67989--7201344874146889998887557


No 18 
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812    This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=377.53  Aligned_cols=169  Identities=33%  Similarity=0.506  Sum_probs=162.9

Q ss_pred             CEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             60464179969788854543321461133873799999999998632047886776114799988887708883299999
Q gi|254780752|r   70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKI  149 (817)
Q Consensus        70 ~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~  149 (817)
                      .+.|||||+||+.|+.|+||+||.+|-+|+|+|+-||-+|+-.|-+   +|+++.|||||+||||||+||.++|++.||.
T Consensus        54 ~~~Wv~yd~IS~nlk~AvIAsEDa~F~~H~GFD~eaiq~A~e~Nek---~g~~v~GgSTISQQlAKNlFLw~gr~~lRKG  130 (228)
T TIGR02070        54 QHRWVPYDKISPNLKRAVIASEDAKFVEHHGFDFEAIQKALEKNEK---SGKVVRGGSTISQQLAKNLFLWSGRSYLRKG  130 (228)
T ss_pred             CCCCCCHHHCCHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEECCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             4577784443811201041114657555468675799999996312---4875605530789999986422787401466


Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHH----H
Q ss_conf             999999999866079999999720142674331099999987354234403027125444015764332111114----6
Q gi|254780752|r  150 KEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNK----A  225 (817)
Q Consensus       150 ~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~----~  225 (817)
                      .|++..+.||..+||+-|||-|||.|-||+|.||+||||++||+++++.||-.|||.||++++||-.|+--++-.    .
T Consensus       131 ~Ea~~T~llE~~w~K~RIlEvYLNs~EwG~GvfGaEAAsryYF~~~A~~Ls~~QAA~LAA~LPnP~~y~~~r~~~nvhi~  210 (228)
T TIGR02070       131 LEAWITVLLETLWSKKRILEVYLNSVEWGNGVFGAEAASRYYFKRSASRLSRSQAARLAAVLPNPKKYKENRPGPNVHIY  210 (228)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEE
T ss_conf             79999999988748731141111010166580477899775225265540588999998741582122310689851664


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             6789988876665420
Q gi|254780752|r  226 AIARRNWVIDRMEENG  241 (817)
Q Consensus       226 a~~Rr~~VL~~M~~~g  241 (817)
                      .++|...++++|-..+
T Consensus       211 v~~k~~~I~~~M~~~~  226 (228)
T TIGR02070       211 VRKKARWILKRMGYVE  226 (228)
T ss_pred             EHHHHHHHHHHHHHCC
T ss_conf             1165689998643036


No 19 
>COG2602 Beta-lactamase class D [Defense mechanisms]
Probab=98.81  E-value=4.1e-08  Score=72.68  Aligned_cols=168  Identities=17%  Similarity=0.207  Sum_probs=111.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCE
Q ss_conf             33566531000012788740246654456523788037852666412765442256666665304402258876259723
Q gi|254780752|r  473 AMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTV  552 (817)
Q Consensus       473 ~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~  552 (817)
                      -+..|-||||.+.-.-+++.|.-.+   .+.|..-.++...|.     ....-.++++.|+.+|++-++=.+..++|.++
T Consensus        52 qr~sPaSTfKI~~sLigld~Gvl~d---~~~~v~~wd~~~~~f-----~~W~qd~dl~~amk~Svvwy~q~iar~ig~ek  123 (254)
T COG2602          52 QRFSPASTFKIALSLIGLDAGVLSD---EDTPVLLWDGKIRWF-----ESWNQDQDLTSAMKNSVVWYYQEIARAIGREK  123 (254)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCC---CCCEEEEECCCCCCC-----HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8668468999999974114573135---876555107775634-----11215588899999987889999999876899


Q ss_pred             EEEEECCCCCCCCC-CCCCCCC-CCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             52110135565556-7665634-451000037767432201574403544666764102443013358532355666666
Q gi|254780752|r  553 VADYAENFGIYDKM-LPVLPMS-LGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTW  630 (817)
Q Consensus       553 ~~~~~~~~Gi~~~~-~~~~s~a-lG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~  630 (817)
                      +..+++++|.+... ......- .++--+||+|-+.-.--++++-.                                  
T Consensus       124 ~~aylk~l~YGN~dis~~~~~Wl~~sLkIS~~EQv~fL~rL~~~~L----------------------------------  169 (254)
T COG2602         124 MAAYLKQLGYGNQDISGNPGFWLESSLKISPKEQVIFLRRLAQNEL----------------------------------  169 (254)
T ss_pred             HHHHHHHHCCCCHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCC----------------------------------
T ss_conf             9999887522631105899811136652277999999999974669----------------------------------


Q ss_pred             CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEEEECCCCCCCC--EEEEEEC----CCEEEEEE
Q ss_conf             65545546755435358999999999999987348043210599604676046789702--2798456----98799999
Q gi|254780752|r  631 NGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSYRD--TWFIGYT----PTLVVGVY  704 (817)
Q Consensus       631 ~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~~~~D--~WfvG~t----p~~~~~vW  704 (817)
                                    -+|..+-.++.+||--         ....++.+-|||||.-....  .|||||.    ..|+.+.-
T Consensus       170 --------------PFs~~a~~~v~~~m~~---------~~~~~~~l~GKTG~~~~~~~~~GWfVG~v~~~~~~y~FA~n  226 (254)
T COG2602         170 --------------PFSAKAQDLVKAIMIL---------ERGPNWELHGKTGTGIVNTKNLGWFVGWVETNENKYVFATN  226 (254)
T ss_pred             --------------CCCHHHHHHHHHHHHH---------HCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEE
T ss_conf             --------------9887899999877701---------30897699840444653788750599999968937999996


Q ss_pred             E
Q ss_conf             8
Q gi|254780752|r  705 V  705 (817)
Q Consensus       705 v  705 (817)
                      +
T Consensus       227 l  227 (254)
T COG2602         227 L  227 (254)
T ss_pred             E
T ss_conf             1


No 20 
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=97.58  E-value=0.00019  Score=48.43  Aligned_cols=131  Identities=17%  Similarity=0.166  Sum_probs=75.8

Q ss_pred             CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEE-C
Q ss_conf             116640656666117872132344433200123356653100001278874024665445652378803785266641-2
Q gi|254780752|r  441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPEN-Y  519 (817)
Q Consensus       441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N-~  519 (817)
                      .+.|+||..||+||.=-            --+.+++|.|+-|.++...+||.+......+     .+..... ....+ +
T Consensus        41 ~sail~D~~TG~VLy~k------------n~d~~~~pAS~TKlMTalv~le~~~~ld~~v-----~v~~~~~-~~~~~~~  102 (308)
T PRK11669         41 GSAMVVDLNTNKVIYSS------------NPDLVVPIASITKLMTAMVVLDAKLPLDEKL-----KVDISQT-PEMKGVY  102 (308)
T ss_pred             EEEEEEECCCCCEEEEE------------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE-----EEEHHHH-HHCCCCC
T ss_conf             08999999999690015------------8299848789999999999981789988769-----9767762-0006874


Q ss_pred             CCCCCC-HHH----HHHHHHHHCCHHHHHHHHHCCC--CEEE----EEECCCCCCCCCCCCCCCCCCC-CEEHHHHHHHH
Q ss_conf             765442-256----6666653044022588762597--2352----1101355655567665634451-00003776743
Q gi|254780752|r  520 SKNFSG-AST----LRFGLEKSRNLMTVRLAHNMGM--TVVA----DYAENFGIYDKMLPVLPMSLGA-GETTVLRMVSA  587 (817)
Q Consensus       520 ~~~~~G-~it----l~~Al~~S~N~~~v~l~~~~G~--~~~~----~~~~~~Gi~~~~~~~~s~alG~-~~vtpl~la~a  587 (817)
                      .+-..| .++    ++-+|..|-|-.++-|++.++-  +.|+    +.++++|+.+-..-+ +.+|-. .-.|.-|||..
T Consensus       103 s~l~~G~~~tv~dLl~~~li~S~NdAA~aLAe~i~Gs~~~Fv~~MN~kA~eLGm~~T~F~n-p~GL~~~n~sTA~DLA~L  181 (308)
T PRK11669        103 SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRYVE-PTGLSVHNVSTARDLTKL  181 (308)
T ss_pred             CCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCCCEECHHHHHHH
T ss_conf             4334798888999999998746529999999970767999999999999982999888868-999898880389999999


Q ss_pred             HHH
Q ss_conf             220
Q gi|254780752|r  588 YAV  590 (817)
Q Consensus       588 ya~  590 (817)
                      ...
T Consensus       182 ~~~  184 (308)
T PRK11669        182 LIA  184 (308)
T ss_pred             HHH
T ss_conf             999


No 21 
>pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase.
Probab=97.35  E-value=0.0036  Score=39.91  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=77.4

Q ss_pred             EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCC--EEEEEC-CC--C
Q ss_conf             166406566661178721323444332001233566531000012788740---2-4665445652--378803-78--5
Q gi|254780752|r  442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDA--PIEVVS-RG--K  512 (817)
Q Consensus       442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~--p~~~~~-~~--~  512 (817)
                      +.++||..||+|+.--       +     .+.+++|.|+-|.++...+||.   | +.+.+.+.-+  ...... .+  .
T Consensus        14 saiv~D~~tg~iL~~k-------n-----~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~~~~~~~~~~~~s~   81 (241)
T pfam00768        14 SAILVDYNTGKVLYEK-------N-----ADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALGNFRGSSN   81 (241)
T ss_pred             EEEEEECCCCCEEEEE-------C-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCCE
T ss_conf             9999999999790006-------9-----099817789999999999999756289885444210188998637888734


Q ss_pred             EEEEEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCCC--CCEEH
Q ss_conf             2666412765442256666----66530440225887625972------352110135565556766563445--10000
Q gi|254780752|r  513 IWKPENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSLG--AGETT  580 (817)
Q Consensus       513 ~~~p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~alG--~~~vt  580 (817)
                      .|-      +-...+++++    .|..|-|-.++-|++.+|-.      .+-+.|+++|+.+-...++ .+|-  ..-.|
T Consensus        82 ~~l------~~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~T~F~np-~GL~~~~~~sT  154 (241)
T pfam00768        82 MFL------KPGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKNTRFVNP-TGLDNHGQYSS  154 (241)
T ss_pred             EEE------CCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC-CCCCCCCCEEC
T ss_conf             653------48999889999999987564599999999845829999999999999819999866668-77778886667


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             377674322015
Q gi|254780752|r  581 VLRMVSAYAVFA  592 (817)
Q Consensus       581 pl~la~aya~~A  592 (817)
                      ..|||.....+.
T Consensus       155 A~Dla~l~~~~~  166 (241)
T pfam00768       155 ARDLAILARALI  166 (241)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999998


No 22 
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=96.02  E-value=0.0046  Score=39.17  Aligned_cols=132  Identities=21%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHCC-CCCCCCCCCCEEEEECCCCEEEE
Q ss_conf             116640656666117872132344433200123356653100001278---87402-46654456523788037852666
Q gi|254780752|r  441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA---ALDSG-YTPASVIMDAPIEVVSRGKIWKP  516 (817)
Q Consensus       441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~---Ale~G-~tp~t~~~D~p~~~~~~~~~~~p  516 (817)
                      -+.|+||..||+||.=       +     -.+.+++|.|+-|.++...   ||++| +.+++.+.     +..  ..|..
T Consensus        40 ~sail~D~~TG~VLy~-------K-----n~d~~~~pAS~TKlMTa~lv~eai~~g~i~ld~~v~-----vs~--~a~~~  100 (400)
T PRK10001         40 RAWILMDYASGKVLAE-------G-----NADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVT-----VGK--DAWAT  100 (400)
T ss_pred             EEEEEEECCCCCCHHH-------C-----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE-----ECH--HHHHH
T ss_conf             1899999999959453-------0-----939984877999999999999998659998786477-----248--99852


Q ss_pred             EEC-----CCCC---CCHHHHHH----HHHHHCCHHHHHHHHHCCCC--E----EEEEECCCCCCCCCCCCCCCCCCC--
Q ss_conf             412-----7654---42256666----66530440225887625972--3----521101355655567665634451--
Q gi|254780752|r  517 ENY-----SKNF---SGASTLRF----GLEKSRNLMTVRLAHNMGMT--V----VADYAENFGIYDKMLPVLPMSLGA--  576 (817)
Q Consensus       517 ~N~-----~~~~---~G~itl~~----Al~~S~N~~~v~l~~~~G~~--~----~~~~~~~~Gi~~~~~~~~s~alG~--  576 (817)
                      .|.     +.-+   ...+|+++    .+..|-|=.++-|++.++-.  .    +-+.|+++|+.+-...+++ +|-.  
T Consensus       101 ~~~~~~g~S~~~l~~g~~~tv~dLL~~lli~SaNDAA~aLAe~i~Gs~~~Fv~~MN~kA~~LG~~nT~F~np~-GL~~~~  179 (400)
T PRK10001        101 GNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVH-GLDAPG  179 (400)
T ss_pred             CCCCCCCCCEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCC-CCCCCC
T ss_conf             4765568742442379898999999998774425999999972355689999999999998289875435664-366754


Q ss_pred             CEEHHHHHHHHHHHCC
Q ss_conf             0000377674322015
Q gi|254780752|r  577 GETTVLRMVSAYAVFA  592 (817)
Q Consensus       577 ~~vtpl~la~aya~~A  592 (817)
                      .-.|+-+||..-..+.
T Consensus       180 ~~sTA~Dla~la~~l~  195 (400)
T PRK10001        180 QFSTARDMALLGKALI  195 (400)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             4455999999999886


No 23 
>COG2367 PenP Beta-lactamase class A [Defense mechanisms]
Probab=95.95  E-value=0.13  Score=29.50  Aligned_cols=109  Identities=22%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEECCCCEE
Q ss_conf             531166406566661178721323444332001233566531000012788740---2-466544565237880378526
Q gi|254780752|r  439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVVSRGKIW  514 (817)
Q Consensus       439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~~~~~~~  514 (817)
                      ...++.+.|-.||...+.-|             ....+-.||||-.++++.|++   | +.+.+.+.=..-....+.+.-
T Consensus        63 ~~~~~~v~d~~t~~~~~~n~-------------~~~fp~aSt~K~~v~~a~l~~v~~G~~~l~e~~ti~~d~~~~~s~~~  129 (329)
T COG2367          63 GRVGVYVLDVDTGELIAING-------------DERFPAASTIKLPVLAALLEQVDAGRIGLDERLTITKDDRVGGSGVL  129 (329)
T ss_pred             CEEEEEEEECCCCCEEEECC-------------CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHH
T ss_conf             52679999668873131157-------------75212578999999999999714575575542010433322576111


Q ss_pred             EEEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC-EEEEEECCCCCCC
Q ss_conf             66412765442256666----66530440225887625972-3521101355655
Q gi|254780752|r  515 KPENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT-VVADYAENFGIYD  564 (817)
Q Consensus       515 ~p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~-~~~~~~~~~Gi~~  564 (817)
                      .-..+.+    .+++++    .+..|-|+..=-+..++|.. .+..++++.|+..
T Consensus       130 ~~~~~g~----~~t~~el~~~mi~~SDNtAtnmLi~rlg~~~~v~~~l~~~Gl~~  180 (329)
T COG2367         130 QYLVGGG----GSTLRELLTKMITASDNTATNMLIERLGGPKALNEWLRSIGLPN  180 (329)
T ss_pred             EEECCCC----CEEHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf             1315788----35799999652221402888999999358199999999818832


No 24 
>PRK00971 glutaminase; Provisional
Probab=95.49  E-value=0.16  Score=28.88  Aligned_cols=100  Identities=22%  Similarity=0.328  Sum_probs=67.2

Q ss_pred             CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf             10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r  576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT  655 (817)
Q Consensus       576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~  655 (817)
                      +.++|..+||.+-+++||+|+.  |.                                       ..+||++++++..+.
T Consensus       197 Si~vt~~dLA~~~a~LAn~G~~--P~---------------------------------------tg~~vls~~~~r~v~  235 (308)
T PRK00971        197 ALEMSCIDLARAGLFLANDGVS--PH---------------------------------------TGERVVSPSQARQVN  235 (308)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCCCCCHHHHHHHH
T ss_conf             7321299999999999768968--99---------------------------------------889538999999999


Q ss_pred             HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99999873-4804321059960467604678970227984569-879999982668982789864421217999999
Q gi|254780752|r  656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAF  730 (817)
Q Consensus       656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~  730 (817)
                      .+|...-- ..+|.-+...|.|.  |+|-+=     =.++..| ++.++||-    | +  -+..|.++++-..-+.
T Consensus       236 s~M~tcGmYd~SGefa~~VGlPa--KSGVgG-----gIlavvPg~~gIav~S----P-~--LD~~GNSv~G~~~le~  298 (308)
T PRK00971        236 ALMATCGMYDASGEFAYRVGLPA--KSGVGG-----GILAVVPGEMAIAVWS----P-G--LDAKGNSLAGTAALER  298 (308)
T ss_pred             HHHHHCCCCCCCCCHHHEECCCC--CCCCCC-----EEEEEECCCCEEEEEC----C-C--CCCCCCCHHHHHHHHH
T ss_conf             99987688655331254068710--367665-----3899937971899988----8-8--6888886999999999


No 25 
>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Probab=95.48  E-value=0.0059  Score=38.43  Aligned_cols=131  Identities=18%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHCC-CCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf             16640656666117872132344433200123356653100001278---87402-466544565237880378526664
Q gi|254780752|r  442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA---ALDSG-YTPASVIMDAPIEVVSRGKIWKPE  517 (817)
Q Consensus       442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~---Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~  517 (817)
                      |.++||..||+||.=       ++     ...+++|.|+-|.++...   ||++| +++.+.+.     +..  ..|...
T Consensus        48 sailiD~~TG~VLy~-------kN-----ad~~~~pAS~TKlMT~~lv~eai~~g~l~~~d~v~-----vs~--~a~~~~  108 (403)
T PRK10793         48 SYILIDYNSGKVLAE-------QN-----ADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVT-----VGN--DAWATG  108 (403)
T ss_pred             EEEEEECCCCCCHHH-------CC-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE-----ECH--HHHHHC
T ss_conf             999999999949131-------09-----49995877999999999999999759999888599-----658--998514


Q ss_pred             E---CCC-----CCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCCCC--C
Q ss_conf             1---276-----5442256666----66530440225887625972------3521101355655567665634451--0
Q gi|254780752|r  518 N---YSK-----NFSGASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSLGA--G  577 (817)
Q Consensus       518 N---~~~-----~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~alG~--~  577 (817)
                      |   .++     +-...+|+++    .+..|-|=.++-|++.++-.      .+-+.|+.+|+.+-...+++ +|-.  .
T Consensus       109 ~~~~~g~s~~~l~~G~~~tv~dLl~gl~i~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kA~eLG~~nT~F~np~-GL~~~~~  187 (403)
T PRK10793        109 NPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH-GLDADGQ  187 (403)
T ss_pred             CCCCCCCCEEEECCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCC-CCCCCCC
T ss_conf             876678742541589899999999975652435999999975069899999999999998589874544787-7767676


Q ss_pred             EEHHHHHHHHHHHCC
Q ss_conf             000377674322015
Q gi|254780752|r  578 ETTVLRMVSAYAVFA  592 (817)
Q Consensus       578 ~vtpl~la~aya~~A  592 (817)
                      -.|+-+||..-..+.
T Consensus       188 ~tTA~Dla~la~~l~  202 (403)
T PRK10793        188 YSSARDMALIGQALI  202 (403)
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             558899999999998


No 26 
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=95.17  E-value=0.012  Score=36.46  Aligned_cols=136  Identities=20%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHCC-CCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf             16640656666117872132344433200123356653100001278---87402-466544565237880378526664
Q gi|254780752|r  442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA---ALDSG-YTPASVIMDAPIEVVSRGKIWKPE  517 (817)
Q Consensus       442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~---Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~  517 (817)
                      +.|+||..||+||.=       ++     .+.+++|.|+-|.++...   ++++| +++.+.+.=++-.+...+..+.  
T Consensus        40 sailiD~~TG~vLy~-------kN-----~d~~~~pAS~TKlMT~~v~~e~i~~g~l~~d~~v~vs~~a~~~~~~~~~--  105 (390)
T PRK11397         40 SWVLMDYTTGQILTA-------GN-----EHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFV--  105 (390)
T ss_pred             EEEEEECCCCCEEEE-------EC-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCC--
T ss_conf             999999999969201-------29-----2998487799999999999999973999978659963878741487657--


Q ss_pred             ECCC---CCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC--E----EEEEECCCCCCCCCCCCCCCCCCC--CEEHHH
Q ss_conf             1276---5442256666----66530440225887625972--3----521101355655567665634451--000037
Q gi|254780752|r  518 NYSK---NFSGASTLRF----GLEKSRNLMTVRLAHNMGMT--V----VADYAENFGIYDKMLPVLPMSLGA--GETTVL  582 (817)
Q Consensus       518 N~~~---~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~--~----~~~~~~~~Gi~~~~~~~~s~alG~--~~vtpl  582 (817)
                      +.+.   +-...+|+++    .+..|-|-.++-|++.++-.  .    +-+.|+++|+.+-...+ +.+|-.  .-.|+.
T Consensus       106 g~s~~~l~~Ge~~tv~dLl~~lli~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kAk~lG~~nT~F~n-p~GL~~~~~~tTA~  184 (390)
T PRK11397        106 GSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFET-VHGLDAPGQHSSAY  184 (390)
T ss_pred             CCCEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCCCCCCCHH
T ss_conf             87224215898999999999988744239999999752799999999999999985898746854-43467888888999


Q ss_pred             HHHHHHHHCC
Q ss_conf             7674322015
Q gi|254780752|r  583 RMVSAYAVFA  592 (817)
Q Consensus       583 ~la~aya~~A  592 (817)
                      +||..-..+.
T Consensus       185 Dla~la~~~i  194 (390)
T PRK11397        185 DLAVLSRAII  194 (390)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999974


No 27 
>pfam04960 Glutaminase Glutaminase. This family of enzymes deaminates glutamine to glutamate EC:3.5.1.2.
Probab=94.43  E-value=0.17  Score=28.68  Aligned_cols=101  Identities=22%  Similarity=0.321  Sum_probs=67.1

Q ss_pred             CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf             10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r  576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT  655 (817)
Q Consensus       576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~  655 (817)
                      +.++|..+||.+-+++||+|+-  |.                                       ..+||++++++..+.
T Consensus       175 Si~~t~~dLA~~aatLAn~G~~--P~---------------------------------------tg~~v~~~~~~~~v~  213 (286)
T pfam04960       175 ALEMSCEDLAVMGATLANGGVN--PI---------------------------------------TGERVVSPDVARQIL  213 (286)
T ss_pred             CHHCCHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCEECCHHHHHHHH
T ss_conf             7044299999999999768968--99---------------------------------------889626999999999


Q ss_pred             HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHH-HHHHHH
Q ss_conf             99999873-4804321059960467604678970227984569-8799999826689827898644212179-999999
Q gi|254780752|r  656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAP-IFNAFM  731 (817)
Q Consensus       656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~p-iw~~~m  731 (817)
                      .+|...-- ..+|.-+...|.|  +|+|-+=     =.++-.| ...++||-    | +  -+..|.++++- +.+.+.
T Consensus       214 s~M~tcGmYd~SG~fa~~VGlP--aKSGVgG-----gIlavvPg~~gIav~S----P-~--LD~~GNSv~G~~~~~~ls  278 (286)
T pfam04960       214 ALMLTCGMYDASGDFAYRVGLP--AKSGVGG-----GILAVVPGVMGIAVWS----P-A--LDEAGNSVAGVAALEKLS  278 (286)
T ss_pred             HHHHHCCCCCCCCHHHHHCCCC--CCCCCCC-----EEEEEECCCCEEEEEC----C-C--CCCCCCCHHHHHHHHHHH
T ss_conf             9998768865500046516871--0467675-----3899937961799988----8-7--688888699999999999


No 28 
>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]
Probab=94.11  E-value=0.043  Score=32.76  Aligned_cols=135  Identities=19%  Similarity=0.176  Sum_probs=79.1

Q ss_pred             CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEEE
Q ss_conf             116640656666117872132344433200123356653100001278874---02-46654456523788037852666
Q gi|254780752|r  441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWKP  516 (817)
Q Consensus       441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~p  516 (817)
                      .+.++||..||+||.=-            -.+.+++|-|.-|.++....||   .| +++.+.+.=+......++    +
T Consensus        39 ~~aiviD~~sGkVLy~k------------n~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~~~----~  102 (389)
T COG1686          39 KAAIVIDADSGKVLYSK------------NADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAKGG----G  102 (389)
T ss_pred             CEEEEEECCCCCEEECC------------CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCC----C
T ss_conf             43899988998472132------------8898878509999999999998764268884553335675663178----7


Q ss_pred             EECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCC--C----EEEEEECCCCCCCCCCCC---CCCCCCCCEEHHHH
Q ss_conf             412765442256666----6653044022588762597--2----352110135565556766---56344510000377
Q gi|254780752|r  517 ENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGM--T----VVADYAENFGIYDKMLPV---LPMSLGAGETTVLR  583 (817)
Q Consensus       517 ~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~--~----~~~~~~~~~Gi~~~~~~~---~s~alG~~~vtpl~  583 (817)
                      .+-.=+-...+++++    .+.+|-|-.++-|++.+|-  +    .+-..++++|+.+-...+   |+-- |. -.|.-+
T Consensus       103 S~~~l~~G~~~tv~dLl~gllv~SaNDAA~aLAe~~~Gs~~~Fv~~MN~kA~~LGm~nT~F~npsGL~~~-~~-~tTArD  180 (389)
T COG1686         103 SKMFLKPGETVTVRDLLKGLLVQSANDAAVALAEHLAGSEDAFVAKMNAKAKELGMKNTHFVNPSGLDNP-GQ-VTTARD  180 (389)
T ss_pred             CCCEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC-CC-CCCHHH
T ss_conf             6511346988789999999887445499999998717989999999999999858988876188788988-87-466989


Q ss_pred             HHHHHHHCCC
Q ss_conf             6743220157
Q gi|254780752|r  584 MVSAYAVFAN  593 (817)
Q Consensus       584 la~aya~~AN  593 (817)
                      ||.....+-.
T Consensus       181 la~l~~~l~~  190 (389)
T COG1686         181 LALLARALIR  190 (389)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999988


No 29 
>PRK12356 glutaminase; Reviewed
Probab=94.08  E-value=0.19  Score=28.44  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=66.7

Q ss_pred             CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf             10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r  576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT  655 (817)
Q Consensus       576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~  655 (817)
                      +.++|..+||.+.+++||+|+.  |.                                       ..+||++++++..+.
T Consensus       200 Si~vt~~dLA~~~atLAn~G~~--P~---------------------------------------tg~~v~~~~~~r~v~  238 (319)
T PRK12356        200 STLVTARDLATMGATLAAGGVN--PL---------------------------------------TGKRVVDADNVPYIL  238 (319)
T ss_pred             CCCEEHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCCCCCHHHHHHHH
T ss_conf             7420299999999999758968--99---------------------------------------889538889999999


Q ss_pred             HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999873-4804321059960467604678970227984569-879999982668982789864421217999999999
Q gi|254780752|r  656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKE  733 (817)
Q Consensus       656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~  733 (817)
                      .+|...-- ..+|.-+...|  +-+|.|-+=     =.++-.| .+.++||-    | +  -+..|.++++-.+-+.+..
T Consensus       239 s~M~tcGmYD~SG~fa~~VG--lPaKSGVgG-----gIlavvPg~~gIav~S----P-~--LD~~GNSvrG~~~le~Ls~  304 (319)
T PRK12356        239 AEMTMEGLYERSGDWAYTVG--LPGKSGVGG-----GILAVVPGKMGIAAFS----P-P--LDEAGNSVKGQLAVASVAR  304 (319)
T ss_pred             HHHHHCCCCCCCCCHHHEEC--CCCCCCCCC-----EEEEEECCCCEEEEEC----C-C--CCCCCCCHHHHHHHHHHHH
T ss_conf             99986688535121020377--702357665-----3799937961799988----8-8--7888886999999999999


No 30 
>PRK12357 glutaminase; Reviewed
Probab=93.90  E-value=0.22  Score=28.09  Aligned_cols=97  Identities=18%  Similarity=0.269  Sum_probs=63.0

Q ss_pred             CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf             10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r  576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT  655 (817)
Q Consensus       576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~  655 (817)
                      +.++|..+||.+.+++||+|+.  |                                       ...+||++++++..+.
T Consensus       205 Si~~t~~dLA~~~a~LAN~G~~--P---------------------------------------~t~~~v~~~~~~r~v~  243 (326)
T PRK12357        205 SIEINTEDIALIGLILAHDGYH--P---------------------------------------IRKEQVIPKEVARLTK  243 (326)
T ss_pred             CHHCCHHHHHHHHHHHHCCCCC--C---------------------------------------CCCCEECCHHHHHHHH
T ss_conf             7052099999999999768979--9---------------------------------------9889755999999999


Q ss_pred             HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECCC-----------EEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99999873-48043210599604676046789702279845698-----------7999998266898278986442121
Q gi|254780752|r  656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPT-----------LVVGVYVGYDIPAPLNNHATGSTLT  723 (817)
Q Consensus       656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp~-----------~~~~vWvG~D~~~~~~~~~~G~~~a  723 (817)
                      .+|...-- ..+|.-+...|.|  +|+|-+=     =.++..|.           +.++||-    | +  -+..|.+++
T Consensus       244 s~M~tcGmYD~SGefa~~VGlP--aKSGVgG-----gIlavvPg~~~~~~~~~~~mgIav~S----P-~--LD~~GNSv~  309 (326)
T PRK12357        244 ALMLTCGMYNASGKFAAFIGLP--AKSGVSG-----GIMALVPSKSRKDLPFQDGCGIGIYG----P-A--IDEYGNSLP  309 (326)
T ss_pred             HHHHHCCCCCCCHHHHHHCCCC--CCCCCCC-----EEEEEECCCCCCCCCCCCCEEEEEEC----C-C--CCCCCCCHH
T ss_conf             9986458865400268863883--0357666-----26999577555565566750699988----8-7--688888699


Q ss_pred             HHHH
Q ss_conf             7999
Q gi|254780752|r  724 APIF  727 (817)
Q Consensus       724 ~piw  727 (817)
                      +-..
T Consensus       310 G~~~  313 (326)
T PRK12357        310 GIML  313 (326)
T ss_pred             HHHH
T ss_conf             9999


No 31 
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=85.24  E-value=0.57  Score=25.27  Aligned_cols=62  Identities=23%  Similarity=0.233  Sum_probs=34.9

Q ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCE-------------EEEEE-CCCCCCCCCCCCCCCCCCCC-----EEHHHHHHHHH
Q ss_conf             6666665304402258876259723-------------52110-13556555676656344510-----00037767432
Q gi|254780752|r  528 TLRFGLEKSRNLMTVRLAHNMGMTV-------------VADYA-ENFGIYDKMLPVLPMSLGAG-----ETTVLRMVSAY  588 (817)
Q Consensus       528 tl~~Al~~S~N~~~v~l~~~~G~~~-------------~~~~~-~~~Gi~~~~~~~~s~alG~~-----~vtpl~la~ay  588 (817)
                      -++..+..|.|..|=.|+..+|...             +.+++ +++|+...   .+.+.=|++     -+||-+|+..-
T Consensus       298 iv~~mnk~SdN~~AE~Ll~tlg~~~~~~pgs~~~g~~av~~~L~~~~Gid~~---~~~i~DGSGLSR~NriSp~~l~~lL  374 (477)
T PRK11113        298 LLKIMLKKSDNMIADTLFRTIGHQRFNVPGSFRNGSDAVRQILRQQAGIDLG---NTIIADGSGLSRHNLIAPATMMQVL  374 (477)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC---CCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             9999985384699999999999983489998899999999999984098977---7777458888824472999999999


Q ss_pred             HHCC
Q ss_conf             2015
Q gi|254780752|r  589 AVFA  592 (817)
Q Consensus       589 a~~A  592 (817)
                      ..++
T Consensus       375 ~~~~  378 (477)
T PRK11113        375 QYIA  378 (477)
T ss_pred             HHHH
T ss_conf             9998


No 32 
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=83.36  E-value=3.1  Score=20.37  Aligned_cols=123  Identities=19%  Similarity=0.285  Sum_probs=75.7

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCC------CEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             21101355655567665634451------000037767432201574403544666764102443013358532355666
Q gi|254780752|r  554 ADYAENFGIYDKMLPVLPMSLGA------GETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNY  627 (817)
Q Consensus       554 ~~~~~~~Gi~~~~~~~~s~alG~------~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~  627 (817)
                      ..+++.+|.-.   .+.-.+|..      .++|..|||.+..++||+|+.  |+                          
T Consensus       173 A~~l~~~G~l~---~dv~~al~~Y~~qCai~~~~~dLA~~g~~LA~~G~~--p~--------------------------  221 (309)
T COG2066         173 AYLLKSFGNLE---HDVEEALDVYFHQCAIEMNCVDLARLGLFLANGGVN--PL--------------------------  221 (309)
T ss_pred             HHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CC--------------------------
T ss_conf             99998579667---879999999998887883399999988998669908--88--------------------------


Q ss_pred             CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHH-HHCCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEE
Q ss_conf             6666554554675543535899999999999998-734804321059960467604678970227984569-87999998
Q gi|254780752|r  628 DTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGV-IKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYV  705 (817)
Q Consensus       628 ~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~v-v~~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWv  705 (817)
                                   ..++|++++.|..+..+|-.- .-.+.|.-+...|.|  ||.|-.-.     .++..| ...++||-
T Consensus       222 -------------tge~v~~~~~ar~i~alM~TcGmYd~sG~fa~rVGlP--~KSGVgGG-----I~AvvPg~~gIav~s  281 (309)
T COG2066         222 -------------TGERVVPADQARQINALMLTCGMYDASGEFAYRVGLP--AKSGVGGG-----IMAVVPGEMGIAVWS  281 (309)
T ss_pred             -------------CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC--CCCCCCCE-----EEEEECCCCEEEEEC
T ss_conf             -------------7885777788899999998703623300147630885--33676660-----589806873789877


Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             26689827898644212179999999999
Q gi|254780752|r  706 GYDIPAPLNNHATGSTLTAPIFNAFMKEA  734 (817)
Q Consensus       706 G~D~~~~~~~~~~G~~~a~piw~~~m~~~  734 (817)
                            | .-+..|.++++-..-+.+..-
T Consensus       282 ------P-~Ld~~GNSv~G~~~le~Ls~~  303 (309)
T COG2066         282 ------P-ALDEAGNSVAGIAALEQLSQQ  303 (309)
T ss_pred             ------C-CCCCCCCCHHHHHHHHHHHHH
T ss_conf             ------7-668778835999999999998


No 33 
>pfam05088 Bac_GDH Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.
Probab=80.46  E-value=4  Score=19.69  Aligned_cols=12  Identities=25%  Similarity=0.794  Sum_probs=7.8

Q ss_pred             HCCCCCCCCCCH
Q ss_conf             014267433109
Q gi|254780752|r  173 NEIFFGFNSYGI  184 (817)
Q Consensus       173 N~v~~G~~~yGv  184 (817)
                      |-+|||-..|.+
T Consensus       153 hFtFLGyReYdl  164 (1526)
T pfam05088       153 HFTFLGYREYDL  164 (1526)
T ss_pred             CEEEEEEEEEEE
T ss_conf             979820489984


No 34 
>pfam06089 Asparaginase_II L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source.
Probab=77.64  E-value=2.7  Score=20.82  Aligned_cols=45  Identities=31%  Similarity=0.442  Sum_probs=34.5

Q ss_pred             CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             531166406566661178721323444332001233566531000012788740246
Q gi|254780752|r  439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYT  495 (817)
Q Consensus       439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~t  495 (817)
                      -.|.+|++| .+|+|+...|..+...           =|-|++|||=..+.++.|..
T Consensus        14 H~g~~vv~d-~~G~~~~~~Gd~~~~~-----------~pRSa~Kp~QAl~~~~sGa~   58 (325)
T pfam06089        14 HRGHAVVVD-ADGRVLASAGDPEAPT-----------FPRSAAKPFQALPLLESGAA   58 (325)
T ss_pred             EEEEEEEEC-CCCCEEEECCCCCCCE-----------ECHHHHHHHHHHHHHHCCCC
T ss_conf             889999992-9999898617999834-----------13344369999999986840


No 35 
>pfam00144 Beta-lactamase Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
Probab=73.28  E-value=5.5  Score=18.74  Aligned_cols=81  Identities=21%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             CCCCCCEEEE--ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCCCEEEEECCCCEEEEEECCC
Q ss_conf             5666611787--213234443320012335665310000127887---402-4665445652378803785266641276
Q gi|254780752|r  448 PRTGRILATI--GGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMDAPIEVVSRGKIWKPENYSK  521 (817)
Q Consensus       448 ~~TG~IlA~v--Gg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D~p~~~~~~~~~~~p~N~~~  521 (817)
                      .+.|+|+---  |-.|..... ---.+.....||.-|+|+.++++   |+| +.+.+.+.+           |-|+. ..
T Consensus        22 ~~~g~~~~~~~~G~~d~~~~~-p~~~dT~f~iaSvsK~~ta~~i~~Lve~G~l~Ld~~v~~-----------ylP~~-~~   88 (327)
T pfam00144        22 TRDGKVVVDRGGGVADLEGGR-PVTADTLFRIASVTKTFTAAAVLALVERGKLDLDDPVSK-----------YLPEF-AG   88 (327)
T ss_pred             EECCEEEEEEEEEEECCCCCC-CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH-----------HCCCC-CC
T ss_conf             999999999868884477798-899998587301279999999999997599886643254-----------28666-77


Q ss_pred             CCCCHHHHHHHHHHHCCHHH
Q ss_conf             54422566666653044022
Q gi|254780752|r  522 NFSGASTLRFGLEKSRNLMT  541 (817)
Q Consensus       522 ~~~G~itl~~Al~~S~N~~~  541 (817)
                      .....||+|+-|.+++=.+.
T Consensus        89 ~~~~~iTi~~LLsHtSGl~~  108 (327)
T pfam00144        89 SGKGGVTLRDLLTHTSGLPP  108 (327)
T ss_pred             CCCCCCCHHHHHHCCCCCCC
T ss_conf             87678659999446579997


No 36 
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179   The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=69.65  E-value=4.2  Score=19.52  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             CCCCCEEEEEEECCCCCCCC--------------------CCCCHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             03027125444015764332--------------------111114667899----888766654201112568887530
Q gi|254780752|r  199 LTIEEAAYLAALPKGPSNYD--------------------PFRKNKAAIARR----NWVIDRMEENGYISQEQALVAKQK  254 (817)
Q Consensus       199 Ltl~EaA~LAgi~~~Ps~y~--------------------P~~np~~a~~Rr----~~VL~~M~~~g~It~~e~~~a~~~  254 (817)
                      .+.-||+-=-.|+++=..|.                    =+.+||-|..=-    ..||++++.+|-||+||++-|..-
T Consensus       101 V~~vEAsAFm~lTPalV~YRa~Gl~R~~~G~v~~~~R~~AKVSRpEVA~~Fm~PAP~~~L~~L~a~G~it~eeAeLA~~v  180 (449)
T TIGR02814       101 VRIVEASAFMQLTPALVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAAILQKLLAEGRITEEEAELAAEV  180 (449)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEECCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf             96799872020368888885615721689847774556785166799986215234899999853387687899998417


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             1112445432223
Q gi|254780752|r  255 PLKITIKQRRSHL  267 (817)
Q Consensus       255 ~i~~~~~~~~~~~  267 (817)
                      |+...+--...+-
T Consensus       181 PvAdDi~vEADSG  193 (449)
T TIGR02814       181 PVADDICVEADSG  193 (449)
T ss_pred             CCCCCEEEECCCC
T ss_conf             7303603752683


No 37 
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase  FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative  electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.92  E-value=6.8  Score=18.13  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             888766654201112568887530111244543
Q gi|254780752|r  231 NWVIDRMEENGYISQEQALVAKQKPLKITIKQR  263 (817)
Q Consensus       231 ~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~  263 (817)
                      ..+|++++++|.||++|++.|...|+...+...
T Consensus       152 ~~il~~L~~~G~iT~eqA~lA~~vPmAdDItvE  184 (418)
T cd04742         152 ERILKKLLAEGKITEEQAELARRVPVADDITVE  184 (418)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf             999999998699889999988279853236773


No 38 
>TIGR01696 deoB phosphopentomutase; InterPro: IPR010045   This entry describes bacterial phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway of nucleotide synthesis. It catalyses a phosphotransfer on ribose and deoxyribose, converting D-ribose 1-phosphate to D-ribose 5-phosphate, and 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate . ; GO: 0000287 magnesium ion binding, 0008973 phosphopentomutase activity, 0009117 nucleotide metabolic process, 0043094 metabolic compound salvage, 0005737 cytoplasm.
Probab=62.86  E-value=4.2  Score=19.54  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             HHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             110012433125732898524888989999999
Q gi|254780752|r  281 LIDRYGEKALYEDGLSIRTSLDPQLQLYARKAL  313 (817)
Q Consensus       281 l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai  313 (817)
                      +++.+|++...+|-+-|||+-|+-+|-+|.+.+
T Consensus       150 IlD~lG~~~M~TG~lI~YTSADsVlQIAaHEe~  182 (404)
T TIGR01696       150 ILDELGEEHMKTGKLIVYTSADSVLQIAAHEEV  182 (404)
T ss_pred             HHHHHCHHHHHCCCEEEEECCCHHHHHHHCCCC
T ss_conf             876504233205873687256413434310134


No 39 
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=61.68  E-value=5.5  Score=18.75  Aligned_cols=194  Identities=19%  Similarity=0.210  Sum_probs=90.6

Q ss_pred             EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHH-HHHH-HHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCC
Q ss_conf             6406566661178721323444332001233566531000-0127-8874024665445652378803785266641276
Q gi|254780752|r  444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKP-IVYA-AALDSGYTPASVIMDAPIEVVSRGKIWKPENYSK  521 (817)
Q Consensus       444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP-~vy~-~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N~~~  521 (817)
                      |.+|-+-|+++|+||...-.++.+-|+..+.-+| |+=.. |.-. ..+..+ ..........+.|.         |=..
T Consensus       310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~-~~~~~r~~~QmvFQ---------dp~~  378 (539)
T COG1123         310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGG-ELRRLRRRIQMVFQ---------DPYS  378 (539)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCEEEEECCCCCCCCC-HHHHHHHHEEEEEE---------CCCC
T ss_conf             2457638878999889999989999999487788-88449992765565523-14552420379996---------7623


Q ss_pred             CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             54422566666653044022588762597235211013556555676656344510000377674322015744035446
Q gi|254780752|r  522 NFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPS  601 (817)
Q Consensus       522 ~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~  601 (817)
                      .-.-.+|+.+.+...+-+....- ..--...+.+.++..|+..+...-++--|-.++--=+-+|.|-+        .+|.
T Consensus       379 SLnPr~tV~~~i~epL~~~~~~~-~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa--------~~P~  449 (539)
T COG1123         379 SLNPRMTVGDILAEPLRIHGGGS-GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA--------LEPK  449 (539)
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHH--------CCCC
T ss_conf             36700069999874786506651-67899999999987199978971386003852567899999985--------4998


Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC-CCEEHHCCCCCCEEEE
Q ss_conf             667641024430133585323556666666554554675543535899999999999998734-8043210599604676
Q gi|254780752|r  602 FIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH-GTATGKVRLNRPVAGK  680 (817)
Q Consensus       602 ~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~-GTg~~a~~~~~~iaGK  680 (817)
                      +|                                  +.+++.-.+|+.+...+.++|.+--+. |...-.      |   
T Consensus       450 ll----------------------------------i~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lf------I---  486 (539)
T COG1123         450 LL----------------------------------ILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF------I---  486 (539)
T ss_pred             EE----------------------------------EECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE------E---
T ss_conf             99----------------------------------9648743227899999999999999974988999------9---


Q ss_pred             ECCCCCCCCEEEEEECCCEEEEEEEE
Q ss_conf             04678970227984569879999982
Q gi|254780752|r  681 TGTTSSYRDTWFIGYTPTLVVGVYVG  706 (817)
Q Consensus       681 TGTt~~~~D~WfvG~tp~~~~~vWvG  706 (817)
                            ..|.+||-+..+-++...-|
T Consensus       487 ------SHDl~vV~~i~drv~vm~~G  506 (539)
T COG1123         487 ------SHDLAVVRYIADRVAVMYDG  506 (539)
T ss_pred             ------ECCHHHHHHHCCEEEEEECC
T ss_conf             ------58789998638668999788


No 40 
>COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]
Probab=59.26  E-value=11  Score=16.86  Aligned_cols=62  Identities=24%  Similarity=0.184  Sum_probs=39.7

Q ss_pred             HHHHHHHHHCCHHHHHHHHHCCCCEE------------EE-EECCCCCCCCCCCCCCCCCCCC-----EEHHHHHHHHHH
Q ss_conf             66666653044022588762597235------------21-1013556555676656344510-----000377674322
Q gi|254780752|r  528 TLRFGLEKSRNLMTVRLAHNMGMTVV------------AD-YAENFGIYDKMLPVLPMSLGAG-----ETTVLRMVSAYA  589 (817)
Q Consensus       528 tl~~Al~~S~N~~~v~l~~~~G~~~~------------~~-~~~~~Gi~~~~~~~~s~alG~~-----~vtpl~la~aya  589 (817)
                      -|.+-+.+|-|..|=-|+..+|....            .. ++++.||+..   .+.+.=|++     -+||-.|.....
T Consensus       298 lLk~m~k~SnN~~Ae~L~~~ig~~~~~~gs~~~~~~~v~~~l~~~~GId~~---~~vL~DGSGLSr~Nritpr~l~~~Lq  374 (470)
T COG2027         298 LLKDMNKYSDNLMAEALFRAIGGAIKRPGSVSAAADAVRQILLQRAGIDLA---GLVLADGSGLSRDNRITPRTLVQLLQ  374 (470)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC---CEEEECCCCCCHHCCCCHHHHHHHHH
T ss_conf             999998615089999999984534478742667789999999987398856---64874189887110229899999999


Q ss_pred             HCC
Q ss_conf             015
Q gi|254780752|r  590 VFA  592 (817)
Q Consensus       590 ~~A  592 (817)
                      .++
T Consensus       375 ~~~  377 (470)
T COG2027         375 AAA  377 (470)
T ss_pred             HHH
T ss_conf             987


No 41 
>pfam06774 consensus
Probab=57.52  E-value=8.7  Score=17.40  Aligned_cols=59  Identities=17%  Similarity=0.134  Sum_probs=44.8

Q ss_pred             CEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             604641799697888545433214611338737999999999986320478867761147999888
Q gi|254780752|r   70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAK  135 (817)
Q Consensus        70 ~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaK  135 (817)
                      .|..-.+-+.+..+.|.+=---=.+|+++.+||+.+.-..++.-.+..       =||-..||++|
T Consensus        15 e~~L~~L~d~sA~lWNevNY~Rrq~ff~~~~vd~~~t~~~~y~~YK~~-------Lgs~taQqV~r   73 (97)
T pfam06774        15 ERDLRELADASAKLWNEVNYLRRQQFFEGKLVDFGRTEKRVYEEYKSV-------LGSVTVQQVAR   73 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_conf             999999999999999899999999976569976333099999999977-------11777999999


No 42 
>pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family.
Probab=54.69  E-value=12  Score=16.39  Aligned_cols=63  Identities=24%  Similarity=0.294  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHCCCC------------EEEEEECCCCCCCCCCCCCCCCCCCC-----EEHHHHHHHHHH
Q ss_conf             5666666530440225887625972------------35211013556555676656344510-----000377674322
Q gi|254780752|r  527 STLRFGLEKSRNLMTVRLAHNMGMT------------VVADYAENFGIYDKMLPVLPMSLGAG-----ETTVLRMVSAYA  589 (817)
Q Consensus       527 itl~~Al~~S~N~~~v~l~~~~G~~------------~~~~~~~~~Gi~~~~~~~~s~alG~~-----~vtpl~la~aya  589 (817)
                      --++..+..|.|..|=.|+..+|..            .+.++++++|+....   +-+.=|++     -+||-+|+..-.
T Consensus       233 ~iv~~m~k~S~N~~AE~L~~~lg~~~~~~~s~~~g~~~v~~~L~~~gi~~~~---~~l~DGSGLSr~n~is~~~l~~lL~  309 (383)
T pfam02113       233 DLLKKMMKKSDNLIAESLFREIGVAIKRPGSFEAGADAVRSILSTAGIDTAN---LVLRDGSGLSRHNLVTAATLAQLLQ  309 (383)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC---CEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             9999997418569999999999986279988899999999999974999556---4784489887334549999999999


Q ss_pred             HCC
Q ss_conf             015
Q gi|254780752|r  590 VFA  592 (817)
Q Consensus       590 ~~A  592 (817)
                      .+.
T Consensus       310 ~~~  312 (383)
T pfam02113       310 AIA  312 (383)
T ss_pred             HHH
T ss_conf             998


No 43 
>PRK12361 hypothetical protein; Provisional
Probab=54.13  E-value=14  Score=16.05  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=62.4

Q ss_pred             CCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             26743310999999873542344030271254440157643321111146678998887666542011125688875301
Q gi|254780752|r  176 FFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKP  255 (817)
Q Consensus       176 ~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~  255 (817)
                      -||+|--..-.||.-.-.++  ++|..|.  |.       ..+-.+.-.+.-+||-.-|.+|.+.|+++..+..      
T Consensus       182 AlG~gRSv~v~aAyll~~~~--~~~~~~~--~~-------~i~~~r~ta~ln~~q~~~l~~~~~~~~~~~~~~a------  244 (546)
T PRK12361        182 ALGRGRSVLVLAAYLLCKDK--QLSVEEV--LQ-------QIKQIRKTARLNKWQLKALEKMLDQGKINIHKRA------  244 (546)
T ss_pred             CCCCCHHHHHHHHHHHHCCC--CCCHHHH--HH-------HHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCE------
T ss_conf             88896159999999973388--8999999--99-------9999987524789999999999847935513755------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEE-EECCCHHHHHHHHHHHHHH
Q ss_conf             112445432223457156799885311001243312573289-8524888989999999987
Q gi|254780752|r  256 LKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSI-RTSLDPQLQLYARKALQNG  316 (817)
Q Consensus       256 i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I-~TTiD~~lQ~~Ae~ai~~~  316 (817)
                       -+-.+| -+..+..+-..++++++|..+|.        |+| .||-+..-.+.|++|+.++
T Consensus       245 -~li~NP-vsG~g~~~~~~~~i~~~L~~~~~--------l~v~~t~~~~~a~~LArqAv~~G  296 (546)
T PRK12361        245 -WLIANP-VSGGGKWQQYGEQIIQELKAYFD--------LTVKLTTPDISANTLAKQARKAG  296 (546)
T ss_pred             -EEEECC-CCCCCCHHHHHHHHHHHHHHHEE--------EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             -999836-77898768899999997353176--------89996688889999999999749


No 44 
>PRK11289 ampC beta-lactamase; Provisional
Probab=53.49  E-value=14  Score=15.98  Aligned_cols=14  Identities=21%  Similarity=0.185  Sum_probs=7.0

Q ss_pred             CCCCCCCCCHHHHH
Q ss_conf             33566531000012
Q gi|254780752|r  473 AMRQPGSCFKPIVY  486 (817)
Q Consensus       473 ~~rqpGSt~KP~vy  486 (817)
                      ...+.||.=|+|+-
T Consensus        83 T~F~iaSisK~fTa   96 (387)
T PRK11289         83 TLFELGSVSKTFTA   96 (387)
T ss_pred             CEEECCCCHHHHHH
T ss_conf             87852110599999


No 45 
>pfam00901 Orbi_VP5 Orbivirus outer capsid protein VP5. cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion.
Probab=50.93  E-value=16  Score=15.72  Aligned_cols=92  Identities=24%  Similarity=0.284  Sum_probs=48.2

Q ss_pred             HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----------CCHHHHHHHHHHHHC-----
Q ss_conf             9969788854543321461133873799999999998632047886776-----------114799988887708-----
Q gi|254780752|r   77 QIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEG-----------ASTITQQVAKNFLLT-----  140 (817)
Q Consensus        77 ~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qG-----------gSTITQQlaKn~~l~-----  140 (817)
                      +.+-+-+.+|+.+---++-|+--|   +...|++=+.|-...-.+.+||           |+.|-|-++=|++..     
T Consensus         3 sR~Gk~v~~aLTS~takkiystiG---kaaeR~aeSEIGsaaIdGvvQGsv~S~ltGesyGesvKQAVilNVlG~~d~~p   79 (508)
T pfam00901         3 SRFGKKVGNALTSDTAKRIYSTIG---KAAERVAESEIGSAAIDGVVQGSVHSALTGESYGESVKQAVILNVLGAGDEPP   79 (508)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             446667655540436899999999---99999998566389885777646666652762588999999998624689998


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHCH--HHHHHHH
Q ss_conf             -----883299999999999999866079--9999997
Q gi|254780752|r  141 -----SNQTMDRKIKEILLSFRLEKAYDK--EKILEFY  171 (817)
Q Consensus       141 -----~e~t~~RK~~E~~lA~~lE~~~sK--~eILe~Y  171 (817)
                           .|+.+.+|++|+=...+=|....|  ++|++-+
T Consensus        80 DPLSPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~kf  117 (508)
T pfam00901        80 DPLSPGEQGLQRKLKELEREQKEEEVREKHNKEIIEKF  117 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99886479999999999998750699998779999999


No 46 
>TIGR02415 23BDH acetoin reductases; InterPro: IPR014007   One member of this family, as characterised in Klebsiella terrigena , is able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also capable of irreversible reduction of diacetyl with NADH to acetoin. There has been a reuctance to classify the enzyme as either 1.1.1.4 from EC, which is (R,R)-butanediol dehydrogenase, or 1.1.1.5 from EC, which is acetoin dehydrogenase without a specified stereochemistry . Another member of this family, from Corynebacterium glutamicum (Brevibacterium flavum), is called L-2,3-butanediol dehydrogenase .    This enzyme is a homotetramer in the family of short chain dehydrogenases (IPR002198 from INTERPRO). .
Probab=49.95  E-value=16  Score=15.67  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=11.8

Q ss_pred             CCCEEEEEECCCCCC-CCCCCCCCCC
Q ss_conf             972352110135565-5567665634
Q gi|254780752|r  549 GMTVVADYAENFGIY-DKMLPVLPMS  573 (817)
Q Consensus       549 G~~~~~~~~~~~Gi~-~~~~~~~s~a  573 (817)
                      |++.-++-++++|-. .+....-|+|
T Consensus       117 GIQAA~~~Fkk~~~~tGkIINAaSiA  142 (258)
T TIGR02415       117 GIQAAARQFKKQGHGTGKIINAASIA  142 (258)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             88999987787168987115776575


No 47 
>pfam05279 Asp-B-Hydro_N Aspartyl beta-hydroxylase N-terminal region. This family includes the N-terminal regions of the junctin, junctate and aspartyl beta-hydroxylase proteins. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins.
Probab=49.40  E-value=17  Score=15.57  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=16.3

Q ss_pred             HHHHHCCCCCHHHHHCCCCCCCEEEECCCCC
Q ss_conf             9987046989788512477887799907894
Q gi|254780752|r   31 IAKISQNLPDYAALNSYSPAVTTRIHAGNGA   61 (817)
Q Consensus        31 ~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~   61 (817)
                      +..++-+|-++.++-.     ..-|||+||.
T Consensus        28 VaVVwFdlVDYeeVlg-----kLgiYDaDGD   53 (232)
T pfam05279        28 VAVVWFDLVDYEEVLG-----KLGVYDADGD   53 (232)
T ss_pred             HHEEEEEECCHHHHHH-----HHCEECCCCC
T ss_conf             3045544003898754-----4310026888


No 48 
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276   This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=49.13  E-value=13  Score=16.22  Aligned_cols=41  Identities=29%  Similarity=0.573  Sum_probs=19.4

Q ss_pred             EEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             845698799999826689827898644212179999999999748983006
Q gi|254780752|r  693 IGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRF  743 (817)
Q Consensus       693 vG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f  743 (817)
                      .||-..+=-||   ||.|.|--.       +.-=..+..+++++-+|.+.|
T Consensus       705 ~~Y~~giGpGV---YDIHSPRvP-------S~eE~~~~~~~aL~~~p~~~l  745 (778)
T TIGR01371       705 FGYPNGIGPGV---YDIHSPRVP-------SVEEMADLIEKALQVLPAERL  745 (778)
T ss_pred             CCCCCCCCCCE---EECCCCCCC-------HHHHHHHHHHHHHHHCCHHHC
T ss_conf             36432348721---322688867-------389999999999974005508


No 49 
>PRK06199 ornithine cyclodeaminase; Validated
Probab=44.62  E-value=20  Score=15.09  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             EECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             52255531166406566661178721
Q gi|254780752|r  434 RQIPKVQGGLIAMDPRTGRILATIGG  459 (817)
Q Consensus       434 ~~~p~~q~a~V~id~~TG~IlA~vGg  459 (817)
                      ...|..++-++..|+.||+.+|+..|
T Consensus       106 ~GLP~~~a~iiL~D~~TG~PlAimdg  131 (379)
T PRK06199        106 KGLPRSILTFVLNDADTGAPLAIMSA  131 (379)
T ss_pred             CCCCCCEEEEEEECCCCCCEEEEECC
T ss_conf             59866428999962777965788763


No 50 
>PRK06823 ornithine cyclodeaminase; Validated
Probab=44.10  E-value=18  Score=15.35  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             EECCCCCCEEEEECCCCCCCEEEE
Q ss_conf             522555311664065666611787
Q gi|254780752|r  434 RQIPKVQGGLIAMDPRTGRILATI  457 (817)
Q Consensus       434 ~~~p~~q~a~V~id~~TG~IlA~v  457 (817)
                      ...|..||-+++.|+.||+.+|+.
T Consensus        78 ~glP~~~g~i~L~d~~TG~p~A~l  101 (315)
T PRK06823         78 QGLPSNQGLMLAFSAKTGEPQALL  101 (315)
T ss_pred             CCCCCCCEEEEEEECCCCCEEEEE
T ss_conf             698764369999988999757998


No 51 
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=42.99  E-value=12  Score=16.53  Aligned_cols=19  Identities=11%  Similarity=0.008  Sum_probs=7.4

Q ss_pred             EEECCCHHHHHHHHHHHHH
Q ss_conf             9852488898999999998
Q gi|254780752|r  297 IRTSLDPQLQLYARKALQN  315 (817)
Q Consensus       297 I~TTiD~~lQ~~Ae~ai~~  315 (817)
                      .+..||..-+.-.-.++.+
T Consensus        80 ~~~~~NC~~~~T~y~~~~~   98 (383)
T TIGR02928        80 STVYINCQILDTSYQVLVE   98 (383)
T ss_pred             EEEEECCCCCCCHHHHHHH
T ss_conf             8999778546846999999


No 52 
>pfam06491 DUF1094 Protein of unknown function (DUF1094). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=41.66  E-value=22  Score=14.79  Aligned_cols=42  Identities=19%  Similarity=0.214  Sum_probs=26.4

Q ss_pred             CCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCHHHHHHH
Q ss_conf             247788779990789496666125604641799697888545
Q gi|254780752|r   46 SYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVKYAF   87 (817)
Q Consensus        46 ~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~~l~~A~   87 (817)
                      .+.|+.||.-+-+||+++.-+-+..=+=-+.++|.++|++||
T Consensus        53 ~~pPSSPs~ALfKdGelvh~ieRh~IEGr~ae~Ia~~L~~af   94 (96)
T pfam06491        53 GYPPSSPSMALFKDGELVHMIERHHIEGREAEEIAENLTEAF   94 (96)
T ss_pred             CCCCCCCCEEEEECCEEEEEEEHHHCCCCCHHHHHHHHHHHH
T ss_conf             989899501456489889987512007989999999999985


No 53 
>PRK06046 alanine dehydrogenase; Validated
Probab=41.66  E-value=20  Score=15.07  Aligned_cols=26  Identities=38%  Similarity=0.575  Sum_probs=21.9

Q ss_pred             EECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             52255531166406566661178721
Q gi|254780752|r  434 RQIPKVQGGLIAMDPRTGRILATIGG  459 (817)
Q Consensus       434 ~~~p~~q~a~V~id~~TG~IlA~vGg  459 (817)
                      ...|..+|-+++.|+.||+.+|++.|
T Consensus        80 ~glP~~~g~i~L~d~~TG~p~Ai~d~  105 (326)
T PRK06046         80 RGLPTVMALIILNSPETGAPLALMDG  105 (326)
T ss_pred             CCCCCEEEEEEEEECCCCCEEEEECC
T ss_conf             38874689999998899977999856


No 54 
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=41.14  E-value=21  Score=14.91  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=21.5

Q ss_pred             ECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             2255531166406566661178721
Q gi|254780752|r  435 QIPKVQGGLIAMDPRTGRILATIGG  459 (817)
Q Consensus       435 ~~p~~q~a~V~id~~TG~IlA~vGg  459 (817)
                      ..|..+|-+++.|+.||+.+|++-|
T Consensus        81 glP~~~g~i~L~d~~TG~p~Aild~  105 (312)
T pfam02423        81 GLPTVTATGVLNDPDTGYPLALMDA  105 (312)
T ss_pred             CCCCEEEEEEEEECCCCCEEEEECC
T ss_conf             8872358999998899977999825


No 55 
>TIGR01009 rpsC_bact ribosomal protein S3; InterPro: IPR005704   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes the bacterial type of ribosomal protein S3 and also and many chloroplast forms. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=39.62  E-value=20  Score=14.98  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=10.4

Q ss_pred             HCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             277588999760899531789998
Q gi|254780752|r  758 TGMLSKKGDPDTIIEAFKPGTGPA  781 (817)
Q Consensus       758 sG~la~~~~~~~~~e~f~~gt~P~  781 (817)
                      ||-|++.  +=++.|||.+|.+|=
T Consensus       160 SGRLgGA--EIAR~E~y~EGRvPL  181 (217)
T TIGR01009       160 SGRLGGA--EIARTEWYKEGRVPL  181 (217)
T ss_pred             EECCCCH--HHCCCCEEEECCCCC
T ss_conf             6105742--112221043279973


No 56 
>PRK07340 ornithine cyclodeaminase; Validated
Probab=39.00  E-value=23  Score=14.59  Aligned_cols=26  Identities=35%  Similarity=0.680  Sum_probs=21.9

Q ss_pred             EECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             52255531166406566661178721
Q gi|254780752|r  434 RQIPKVQGGLIAMDPRTGRILATIGG  459 (817)
Q Consensus       434 ~~~p~~q~a~V~id~~TG~IlA~vGg  459 (817)
                      ...|.+||.++++|+.||+.+|+.-|
T Consensus        76 ~glp~~~g~v~L~d~~TG~p~aild~  101 (304)
T PRK07340         76 RGLPTIQGQVVVADAATGEPLFALDG  101 (304)
T ss_pred             CCCCCEEEEEEEEECCCCCEEEEECC
T ss_conf             69885259999999899988999816


No 57 
>PRK13748 putative mercuric reductase; Provisional
Probab=38.58  E-value=24  Score=14.48  Aligned_cols=15  Identities=20%  Similarity=0.186  Sum_probs=6.5

Q ss_pred             CCCCCCCCCHHHHHH
Q ss_conf             426743310999999
Q gi|254780752|r  175 IFFGFNSYGIASAAL  189 (817)
Q Consensus       175 v~~G~~~yGv~aAA~  189 (817)
                      +=.|.|.=|..||-+
T Consensus       102 iVIG~GpaG~~AA~~  116 (561)
T PRK13748        102 AVIGSGGAAMAAALK  116 (561)
T ss_pred             EEECCCHHHHHHHHH
T ss_conf             998958899999999


No 58 
>PRK06141 ornithine cyclodeaminase; Validated
Probab=38.51  E-value=24  Score=14.54  Aligned_cols=25  Identities=32%  Similarity=0.579  Sum_probs=21.4

Q ss_pred             ECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             2255531166406566661178721
Q gi|254780752|r  435 QIPKVQGGLIAMDPRTGRILATIGG  459 (817)
Q Consensus       435 ~~p~~q~a~V~id~~TG~IlA~vGg  459 (817)
                      ..|..+|-+++.|+.||+.+|+.-|
T Consensus        77 glP~~~g~i~L~d~~TG~p~a~~d~  101 (313)
T PRK06141         77 GLPGLHSTYLLFDGRTGEPLALVDG  101 (313)
T ss_pred             CCCCEEEEEEEEECCCCCEEEEECC
T ss_conf             9875358999998899978999837


No 59 
>TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972   This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's.   Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes.    The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . .
Probab=37.84  E-value=6.3  Score=18.35  Aligned_cols=63  Identities=13%  Similarity=0.138  Sum_probs=43.1

Q ss_pred             HHHHHHHCCHHHHHHH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCE------EHHHHHHHHHHHCCC
Q ss_conf             6666530440225887-625972352110135565556766563445100------003776743220157
Q gi|254780752|r  530 RFGLEKSRNLMTVRLA-HNMGMTVVADYAENFGIYDKMLPVLPMSLGAGE------TTVLRMVSAYAVFAN  593 (817)
Q Consensus       530 ~~Al~~S~N~~~v~l~-~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~------vtpl~la~aya~~AN  593 (817)
                      .++|+++.|...++|+ +++.+..+.--..+| |.+--...+++||++.+      +.=|+|...|.+|++
T Consensus        69 ~~~la~~KN~~Y~~LlD~~lTp~d~LPGi~~l-L~~Lk~~~ikialASaSkNA~~vLekL~L~~~Fd~IvD  138 (190)
T TIGR01990        69 KEELAERKNDYYVELLDKELTPEDVLPGIKSL-LEDLKKKNIKIALASASKNAPTVLEKLELRDYFDAIVD  138 (190)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHH-HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             99999987799999975068986604018999-99999848948873023448999998214220422645


No 60 
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=37.84  E-value=14  Score=16.00  Aligned_cols=14  Identities=50%  Similarity=0.821  Sum_probs=5.5

Q ss_pred             HHHHHHHCCCHHHC
Q ss_conf             99998735423440
Q gi|254780752|r  186 SAALTYFNKSVSEL  199 (817)
Q Consensus       186 aAA~~YF~K~~~dL  199 (817)
                      .-+.-|.+|-+.||
T Consensus       360 kt~leyW~klVadL  373 (1053)
T COG5101         360 KTALEYWNKLVADL  373 (1053)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 61 
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; InterPro: IPR012794    Members of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription, 0046278 protocatechuate metabolic process.
Probab=37.09  E-value=5.5  Score=18.73  Aligned_cols=45  Identities=27%  Similarity=0.439  Sum_probs=37.7

Q ss_pred             HHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             987354234403027125444015764332111114667899888766654201112568
Q gi|254780752|r  189 LTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQA  248 (817)
Q Consensus       189 ~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~  248 (817)
                      -.-||.+-..|||+|+|=..||++             |-.||  .|--+.+.||.+.+..
T Consensus        15 i~aF~~~~~~ltl~~vA~~TGL~R-------------AaARR--~LLTL~~LGY~~~Dg~   59 (252)
T TIGR02431        15 IEAFGEERPRLTLTDVAEATGLTR-------------AAARR--FLLTLVELGYVESDGR   59 (252)
T ss_pred             HHHHCCCCCCCCHHHHHHHHCCCC-------------HHHHH--HHHHHHHHCCEECCCC
T ss_conf             997310378989899998758994-------------79888--9984656230421798


No 62 
>COG3462 Predicted membrane protein [Function unknown]
Probab=36.31  E-value=18  Score=15.27  Aligned_cols=17  Identities=18%  Similarity=0.350  Sum_probs=7.8

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             97899999999999999
Q gi|254780752|r    1 MYYRIVSFIGYFFGFAT   17 (817)
Q Consensus         1 ~~~~~~~~~~~~~~~~~   17 (817)
                      |=+++-+|++.++.++.
T Consensus         1 mdk~ven~~w~liglia   17 (117)
T COG3462           1 MDKKVENFAWLLIGLIA   17 (117)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             91799999999999999


No 63 
>pfam05096 Glu_cyclase_2 Glutamine cyclotransferase. This family of enzymes EC:2.3.2.5 catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.
Probab=35.85  E-value=23  Score=14.62  Aligned_cols=17  Identities=29%  Similarity=0.610  Sum_probs=12.2

Q ss_pred             CEEEEECCCCCCCEEEE
Q ss_conf             11664065666611787
Q gi|254780752|r  441 GGLIAMDPRTGRILATI  457 (817)
Q Consensus       441 ~a~V~id~~TG~IlA~v  457 (817)
                      --+|+|||.||.|.+++
T Consensus       195 d~Iv~Idp~tG~V~~~i  211 (264)
T pfam05096       195 NRIARIQPDTGKVVAWI  211 (264)
T ss_pred             CEEEEEECCCCEEEEEE
T ss_conf             45999979997599999


No 64 
>PRK08618 ornithine cyclodeaminase; Validated
Probab=35.56  E-value=27  Score=14.17  Aligned_cols=25  Identities=36%  Similarity=0.606  Sum_probs=21.2

Q ss_pred             ECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             2255531166406566661178721
Q gi|254780752|r  435 QIPKVQGGLIAMDPRTGRILATIGG  459 (817)
Q Consensus       435 ~~p~~q~a~V~id~~TG~IlA~vGg  459 (817)
                      ..|..+|-+++.|+.||+.+|++-|
T Consensus        79 glp~~~g~i~L~d~~TG~p~aild~  103 (325)
T PRK08618         79 GKPTIPGTVILSDFETGEVLAILDG  103 (325)
T ss_pred             CCCCEEEEEEEEECCCCCEEEEECC
T ss_conf             8886468999998898978999827


No 65 
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component; InterPro: IPR011786    Sulphite reductase (NADPH) catalyzes a six electron reduction of sulphite to sulphide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulphur protein.; GO: 0004783 sulfite reductase (NADPH) activity, 0050661 NADP binding, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process, 0009337 sulfite reductase complex (NADPH).
Probab=35.38  E-value=12  Score=16.59  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=15.6

Q ss_pred             HHHHCCCCEEEEEE-CCCCCC-CCCCC
Q ss_conf             87625972352110-135565-55676
Q gi|254780752|r  544 LAHNMGMTVVADYA-ENFGIY-DKMLP  568 (817)
Q Consensus       544 l~~~~G~~~~~~~~-~~~Gi~-~~~~~  568 (817)
                      +.+++|++.+.+=. +++|+. ++..|
T Consensus       300 Ti~~~GLd~~~~Eve~RaG~~l~P~RP  326 (550)
T TIGR02041       300 TIDRMGLDTFKAEVERRAGIKLEPARP  326 (550)
T ss_pred             CHHHCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             333137378999998725886466555


No 66 
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=35.30  E-value=27  Score=14.15  Aligned_cols=54  Identities=24%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHH-HHHHHHHHCHHHHHHHHHH--------CCCCCC-CCCCHHHHHHHHHCCCHHHCCCCC
Q ss_conf             29999999999-9999866079999999720--------142674-331099999987354234403027
Q gi|254780752|r  144 TMDRKIKEILL-SFRLEKAYDKEKILEFYLN--------EIFFGF-NSYGIASAALTYFNKSVSELTIEE  203 (817)
Q Consensus       144 t~~RK~~E~~l-A~~lE~~~sK~eILe~YLN--------~v~~G~-~~yGv~aAA~~YF~K~~~dLtl~E  203 (817)
                      .+.|=++|++- ++.+++     .+|..++|        ..|+|- |+|. +.||+.||+|+..+....-
T Consensus        72 ~i~~if~eI~s~s~~~q~-----~~~~~~~~~~~~~~~kVayLGp~GtfS-~~Aa~~~~~~~~~~~~~~~  135 (386)
T PRK10622         72 YITRLFQLIIEDSVLTQQ-----ALLQQHLNKTNPHSARIAFLGPKGSYS-HLAARQYAARHFEQFIESG  135 (386)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHCCCCCCCC
T ss_conf             999999999999999789-----999865400356676599878997569-9999998764244333478


No 67 
>PRK05362 phosphopentomutase; Provisional
Probab=34.55  E-value=5.9  Score=18.52  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             HHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf             311001243312573289852488898999999
Q gi|254780752|r  280 QLIDRYGEKALYEDGLSIRTSLDPQLQLYARKA  312 (817)
Q Consensus       280 ~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~a  312 (817)
                      ++++.||++.+.+|..-|||+-|+-+|-+|.+.
T Consensus       138 ~ii~~lG~eh~~tg~pIvYTSaDSVfQIAAhe~  170 (393)
T PRK05362        138 EIIDELGEEHMKTGKPIVYTSADSVFQIAAHEE  170 (393)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCEEEEEECCC
T ss_conf             999999898762089769852773489730302


No 68 
>TIGR01974 NDH_I_L proton-translocating NADH-quinone oxidoreductase, chain L; InterPro: IPR003945   NADH-plastoquinone oxidoreductase chain 5 is part of the NADH-ubiquinone oxidoreductase (complex I), which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane :  NADH + ubiquinone = NAD(+) + ubiquinol ; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=33.21  E-value=19  Score=15.16  Aligned_cols=16  Identities=31%  Similarity=0.434  Sum_probs=7.4

Q ss_pred             CCCCCCCHHH--HHHHHH
Q ss_conf             5665310000--127887
Q gi|254780752|r  475 RQPGSCFKPI--VYAAAL  490 (817)
Q Consensus       475 rqpGSt~KP~--vy~~Al  490 (817)
                      |--|--.|++  +|..-+
T Consensus       375 rkMGgL~K~~P~Ty~~f~  392 (691)
T TIGR01974       375 RKMGGLRKKLPVTYITFL  392 (691)
T ss_pred             HHHCCCHHHHHHHHHHHH
T ss_conf             351320132389999999


No 69 
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=32.63  E-value=30  Score=13.87  Aligned_cols=163  Identities=17%  Similarity=0.217  Sum_probs=80.4

Q ss_pred             EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCEEEEECCCCEEEEEECCCC
Q ss_conf             640656666117872132344433200123356653100001278874024665-4456523788037852666412765
Q gi|254780752|r  444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPA-SVIMDAPIEVVSRGKIWKPENYSKN  522 (817)
Q Consensus       444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~-t~~~D~p~~~~~~~~~~~p~N~~~~  522 (817)
                      |.++-.-|++++++|-....++.+-|+.-+.-+| ++=...+-.--+... .+. ....+..         ..+++..+.
T Consensus        26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~-~~~~~~~~~VQ---------mVFQDp~~S   94 (252)
T COG1124          26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPK-KRAKAFYRPVQ---------MVFQDPYSS   94 (252)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCEEEECCCCCCCC-CCCHHHCCCEE---------EEECCCCCC
T ss_conf             2599648978999848989888999999565678-886289888405766-53033304506---------995187224


Q ss_pred             CCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             44225666666530440225887625972352110135565556766563445100003776743220157440354466
Q gi|254780752|r  523 FSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSF  602 (817)
Q Consensus       523 ~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~  602 (817)
                      .+-..|+++.|....++--..-    .-.+..+.++.+|+........+.-|-.++.-=+-+|.|-.        .+|.+
T Consensus        95 LnP~~tv~~~l~Epl~~~~~~~----~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~--------~~Pkl  162 (252)
T COG1124          95 LNPRRTVGRILSEPLRPHGLSK----SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI--------PEPKL  162 (252)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHHHHC--------CCCCE
T ss_conf             6841019899742430377537----89999999998499989985394212816899999999863--------68887


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
Q ss_conf             6764102443013358532355666666655455467554353589999999999999873
Q gi|254780752|r  603 IDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK  663 (817)
Q Consensus       603 i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~  663 (817)
                      +                                  +.++....+|..+-..+.++|....+
T Consensus       163 L----------------------------------IlDEptSaLD~siQa~IlnlL~~l~~  189 (252)
T COG1124         163 L----------------------------------ILDEPTSALDVSVQAQILNLLLELKK  189 (252)
T ss_pred             E----------------------------------EECCCHHHHCHHHHHHHHHHHHHHHH
T ss_conf             9----------------------------------95382344158899999999999998


No 70 
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=32.52  E-value=30  Score=13.85  Aligned_cols=77  Identities=10%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             HHHCCCCCHHHHHCCCCCCCEEE-ECCCCCEEEEEECCCEEEECHHHCCHHHHHHHHHHHCCCCC--CCCCCCHHHHHHH
Q ss_conf             87046989788512477887799-90789496666125604641799697888545433214611--3387379999999
Q gi|254780752|r   33 KISQNLPDYAALNSYSPAVTTRI-HAGNGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFY--YHSGVDIFGIMRA  109 (817)
Q Consensus        33 ~~~~~lP~~~~l~~~~~~~~t~i-yd~dG~~i~~~~~~~R~~v~~~~ip~~l~~A~iA~ED~rFy--~H~GvD~~gi~RA  109 (817)
                      .+.-+||....-...+++.+..| .++||++.-     +...++++++...+..+.-...|..++  -+..+.+..+++.
T Consensus        44 ~i~v~LP~~~~~~~~~~~~~i~I~I~~dg~i~~-----~~~~v~~~~L~~~l~~~~~~~~~~~v~i~aD~~~~y~~vv~V  118 (141)
T PRK11267         44 DVKVNLPASTSTPQPRPEKPVYLSVKADNSMFI-----GNDPVTDETMITALDALTEGKKDTTIFFRADKTVDYETLMKV  118 (141)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE-----CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf             742438876566778988767999916984687-----780357999999999998328996299975899868899999


Q ss_pred             HHHHHH
Q ss_conf             999863
Q gi|254780752|r  110 VLHNIR  115 (817)
Q Consensus       110 ~~~ni~  115 (817)
                      + ..++
T Consensus       119 m-d~~~  123 (141)
T PRK11267        119 M-DTLH  123 (141)
T ss_pred             H-HHHH
T ss_conf             9-9999


No 71 
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=32.51  E-value=15  Score=15.94  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             HHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             3110012433125732898524888989999999
Q gi|254780752|r  280 QLIDRYGEKALYEDGLSIRTSLDPQLQLYARKAL  313 (817)
Q Consensus       280 ~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai  313 (817)
                      ++++.+|++-..+|-+.|||+-|+-+|-+|.+..
T Consensus       138 ~ii~~lGe~h~~Tg~~IvYTSaDsV~QIaahE~~  171 (397)
T COG1015         138 EIIKDLGEEHMKTGKPIVYTSADSVFQIAAHEEV  171 (397)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCHHHEEEECCC
T ss_conf             9999864887740782899557734422430220


No 72 
>pfam09653 consensus
Probab=31.76  E-value=29  Score=13.91  Aligned_cols=38  Identities=21%  Similarity=0.494  Sum_probs=28.3

Q ss_pred             HHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             110012433125732898524888989999999987676
Q gi|254780752|r  281 LIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLIN  319 (817)
Q Consensus       281 l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~  319 (817)
                      |..+|..+. -..|+||+.+-++.++.+|++-..++|..
T Consensus        12 lL~~F~l~S-~~eGIKvH~dA~p~~i~Aa~RLf~KGLit   49 (75)
T pfam09653        12 LLALFPLDS-TQEGIKVHSDAAPELIAAAKRLFDKGLIT   49 (75)
T ss_pred             HHHCCCCCC-HHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             998189711-00364013669999999999999858821


No 73 
>PTZ00318 NADH dehydrogenase; Provisional
Probab=31.55  E-value=31  Score=13.75  Aligned_cols=92  Identities=14%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH------HHC
Q ss_conf             1111466789988876665420111--25688875301112445432223457156799885311001243------312
Q gi|254780752|r  220 FRKNKAAIARRNWVIDRMEENGYIS--QEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEK------ALY  291 (817)
Q Consensus       220 ~~np~~a~~Rr~~VL~~M~~~g~It--~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~------~l~  291 (817)
                      +++.+.|.+=|+.+|.++.+...-+  .+|....+..-+   .-..+.....|.-+.|++++.+.+.+...      .|.
T Consensus       146 LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVV---VGGGpTGVElAgeLad~~~~~~~~~~~~l~~~~~V~Li  222 (514)
T PTZ00318        146 LREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVV---VGGGPTGVEFAANLAEFFRDDVKNINTSLVPFCKVTVL  222 (514)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEE---ECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEE
T ss_conf             788999999999999999985078899789324202789---77776203289999999998876428123010037886


Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             573289852488898999999998
Q gi|254780752|r  292 EDGLSIRTSLDPQLQLYARKALQN  315 (817)
Q Consensus       292 ~~Gl~I~TTiD~~lQ~~Ae~ai~~  315 (817)
                      ..| +|--++|..++++|++.+++
T Consensus       223 ea~-~iLp~f~~~ls~~a~~~L~~  245 (514)
T PTZ00318        223 EAG-EVFGSFDLRVRRWGKRRLDA  245 (514)
T ss_pred             ECH-HHHHCCCHHHHHHHHHHHHH
T ss_conf             050-01210898999999999987


No 74 
>PRK03642 hypothetical protein; Provisional
Probab=31.46  E-value=31  Score=13.77  Aligned_cols=19  Identities=26%  Similarity=0.309  Sum_probs=16.6

Q ss_pred             EHHHHHHHHHHHCCCCCEE
Q ss_conf             0037767432201574403
Q gi|254780752|r  579 TTVLRMVSAYAVFANGGKQ  597 (817)
Q Consensus       579 vtpl~la~aya~~AN~G~~  597 (817)
                      -|.-+++.-...+.|+|.+
T Consensus       302 STa~D~arF~qMlLn~G~~  320 (432)
T PRK03642        302 SNTDDMAVLMQVMLNGGGY  320 (432)
T ss_pred             CCHHHHHHHHHHHHHCCCC
T ss_conf             7899999999999708972


No 75 
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=31.27  E-value=20  Score=14.95  Aligned_cols=29  Identities=31%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             CCCCCEECCHHHHHHHHHHHHHHHH-CCCE
Q ss_conf             7554353589999999999999873-4804
Q gi|254780752|r  639 IDKREQVLDPMTAYQITSMLEGVIK-HGTA  667 (817)
Q Consensus       639 ~~~~~~v~s~~~a~~~~~~L~~vv~-~GTg  667 (817)
                      .+++..++|..+-..+.++|+.-.+ .|++
T Consensus       177 ADEPTTALDvtvQaqIl~ll~~l~~e~~~s  206 (316)
T COG0444         177 ADEPTTALDVTVQAQILDLLKELQREKGTA  206 (316)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             679860451999999999999999854978


No 76 
>pfam09693 Phage_XkdX Phage uncharacterized protein (Phage_XkdX). This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=31.17  E-value=27  Score=14.12  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=14.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHC
Q ss_conf             766654201112568887530
Q gi|254780752|r  234 IDRMEENGYISQEQALVAKQK  254 (817)
Q Consensus       234 L~~M~~~g~It~~e~~~a~~~  254 (817)
                      +.+.+..|+||++||.+-..+
T Consensus        18 v~~fV~~~~IT~eey~eItG~   38 (40)
T pfam09693        18 VKRFVDVGWITPEEYKEITGE   38 (40)
T ss_pred             HHHHHHCCCCCHHHHHHHHCC
T ss_conf             997400254689999998578


No 77 
>pfam05120 GvpG Gas vesicle protein G. These proteins are involved in the formation of gas vesicles.
Probab=30.46  E-value=32  Score=13.63  Aligned_cols=28  Identities=21%  Similarity=0.132  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             6678998887666542011125688875
Q gi|254780752|r  225 AAIARRNWVIDRMEENGYISQEQALVAK  252 (817)
Q Consensus       225 ~a~~Rr~~VL~~M~~~g~It~~e~~~a~  252 (817)
                      .+..++=.-|.++++.|-|++++|+.--
T Consensus        31 ~~i~~~L~~L~~~le~GEI~Eeefd~~E   58 (80)
T pfam05120        31 ENLRAELAELQRQLEAGEISEEEFDRQE   58 (80)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             9999999999999885899989998789


No 78 
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=29.48  E-value=24  Score=14.54  Aligned_cols=17  Identities=18%  Similarity=0.487  Sum_probs=10.4

Q ss_pred             HHHHHCCCCCCCCCCCH
Q ss_conf             54332146113387379
Q gi|254780752|r   87 FVSAEDKNFYYHSGVDI  103 (817)
Q Consensus        87 ~iA~ED~rFy~H~GvD~  103 (817)
                      ++-.+|..||=|+.++=
T Consensus        84 VvQ~~DN~~YL~~~f~g  100 (232)
T TIGR03064        84 VVQGKDNDYYLNKNYEG  100 (232)
T ss_pred             EEECCCCCHHHCCCCCC
T ss_conf             58789862775378898


No 79 
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=28.92  E-value=5.5  Score=18.74  Aligned_cols=74  Identities=14%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHCCCHH--HCCCCCEEEEEEECCCCCCCCCCCCHHHHH------HHHHHHHHHHHHHH
Q ss_conf             9720142674331099999987354234--403027125444015764332111114667------89988876665420
Q gi|254780752|r  170 FYLNEIFFGFNSYGIASAALTYFNKSVS--ELTIEEAAYLAALPKGPSNYDPFRKNKAAI------ARRNWVIDRMEENG  241 (817)
Q Consensus       170 ~YLN~v~~G~~~yGv~aAA~~YF~K~~~--dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~------~Rr~~VL~~M~~~g  241 (817)
                      +|=-.|++|.=..-+.-..+.+|+...+  +||.+|.++|+.|-..+ ..+|.   +.+.      .---.+|++|.+.|
T Consensus         7 ~~~~~~~lG~Li~~v~~~~~~~~~~~L~~~gLt~~Q~~vL~~L~~~~-~~t~~---eLa~~l~id~~tvt~~ldrLe~~G   82 (144)
T PRK11512          7 LFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAA-CITPV---ELKKVLSVDLGALTRMLDRLVCKG   82 (144)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCHH---HHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             78523859999999999999999998754599999999999999869-97999---999997888878999999999787


Q ss_pred             CCCHHH
Q ss_conf             111256
Q gi|254780752|r  242 YISQEQ  247 (817)
Q Consensus       242 ~It~~e  247 (817)
                      +|...-
T Consensus        83 lI~R~~   88 (144)
T PRK11512         83 WVERLP   88 (144)
T ss_pred             CEEECC
T ss_conf             966357


No 80 
>pfam09317 DUF1974 Domain of unknown function (DUF1974). Members of this family of functionally uncharacterized domains are predominantly found in various prokaryotic acyl-coenzyme a dehydrogenases.
Probab=28.61  E-value=35  Score=13.42  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             1461133873799999999998632
Q gi|254780752|r   92 DKNFYYHSGVDIFGIMRAVLHNIRN  116 (817)
Q Consensus        92 D~rFy~H~GvD~~gi~RA~~~ni~~  116 (817)
                      |+-||.|-|.-....+||++-.+.+
T Consensus        27 D~~l~~Hig~~~~N~~Rs~~~glt~   51 (284)
T pfam09317        27 DKALFGHIGFAVSNAARAFWLGLTG   51 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999899999999704


No 81 
>pfam09339 HTH_IclR IclR helix-turn-helix domain.
Probab=28.32  E-value=6.9  Score=18.09  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             HHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             99873542344030271254440157643321111146678998887666542011125
Q gi|254780752|r  188 ALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQE  246 (817)
Q Consensus       188 A~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~  246 (817)
                      --.+|......+++.|.|--.||+++-..               ..|..|.+.||+.++
T Consensus         8 iL~~~~~~~~~~~l~eia~~~gl~kstv~---------------RlL~tL~~~G~v~~d   51 (52)
T pfam09339         8 ILEALAEAPGGLSLTEIARRTGLPKSTAH---------------RLLQTLVELGYVEQD   51 (52)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHH---------------HHHHHHHHCCCCCCC
T ss_conf             99998628999899999999891999999---------------999999988191169


No 82 
>KOG2263 consensus
Probab=27.68  E-value=18  Score=15.34  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=13.3

Q ss_pred             EECCHHHHHHHHHHHHHHHH
Q ss_conf             53589999999999999873
Q gi|254780752|r  644 QVLDPMTAYQITSMLEGVIK  663 (817)
Q Consensus       644 ~v~s~~~a~~~~~~L~~vv~  663 (817)
                      .+-..++|+++.-.+++-|.
T Consensus       574 D~~~~~~~~QiALaikDEV~  593 (765)
T KOG2263         574 DQPRHETCYQIALAIKDEVE  593 (765)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
T ss_conf             76507899999998887887


No 83 
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=27.11  E-value=37  Score=13.25  Aligned_cols=159  Identities=22%  Similarity=0.316  Sum_probs=77.6

Q ss_pred             EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCC--CCCCCCEEEEECCCCEEEEEECC
Q ss_conf             64065666611787213234443320012335665310000127887402-4665--44565237880378526664127
Q gi|254780752|r  444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPA--SVIMDAPIEVVSRGKIWKPENYS  520 (817)
Q Consensus       444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~--t~~~D~p~~~~~~~~~~~p~N~~  520 (817)
                      |.++-..|+|.++.|...-.++.+=|+..+...|             ..| +...  +...+ +..+.. .--|.|++..
T Consensus        24 vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p-------------~~G~i~i~G~~~~~~-~~~~~~-~igy~~~~~~   88 (293)
T COG1131          24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-------------TSGEILVLGYDVVKE-PAKVRR-RIGYVPQEPS   88 (293)
T ss_pred             EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCC-------------CCEEEEECCCCCCCC-HHHHHC-EEEEEECCCC
T ss_conf             4999828959999899999899999999679778-------------864999958627512-676505-2999947877


Q ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEE
Q ss_conf             6544225666666530440225887625972352110135565556-766563445100003776743220157440354
Q gi|254780752|r  521 KNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM-LPVLPMSLGAGETTVLRMVSAYAVFANGGKQIR  599 (817)
Q Consensus       521 ~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~-~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~  599 (817)
                        ++..+|.++.|.......-..-  ....+.+.++++.||+.... .+.-.++.|.  ---+.+|.   +|++     +
T Consensus        89 --~~~~lTv~e~l~~~~~l~~~~~--~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~--kqrl~ia~---aL~~-----~  154 (293)
T COG1131          89 --LYPELTVRENLEFFARLYGLSK--EEAEERIEELLELFGLEDKANKKVRTLSGGM--KQRLSIAL---ALLH-----D  154 (293)
T ss_pred             --CCCCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCCCHHCCCHHHCCHHH--HHHHHHHH---HHHC-----C
T ss_conf             --7714759999999999849971--6679999999998699603288102379889--99999999---9966-----9


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCC
Q ss_conf             466676410244301335853235566666665545546755435358999999999999987348
Q gi|254780752|r  600 PSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHG  665 (817)
Q Consensus       600 P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~G  665 (817)
                      |-++          |                        .+++..-+||..+..+.++|+.-.+.|
T Consensus       155 P~ll----------i------------------------LDEPt~GLDp~~~~~~~~~l~~l~~~g  186 (293)
T COG1131         155 PELL----------I------------------------LDEPTSGLDPESRREIWELLRELAKEG  186 (293)
T ss_pred             CCEE----------E------------------------EECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             9999----------9------------------------969977879999999999999999679


No 84 
>PRK10893 hypothetical protein; Provisional
Probab=26.88  E-value=37  Score=13.23  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=15.6

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf             665310000127887402466544565237880378
Q gi|254780752|r  476 QPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRG  511 (817)
Q Consensus       476 qpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~  511 (817)
                      .|+|-++-+. +-.++-.+.-.++..|.|+.+.+.+
T Consensus       121 ~~~s~iq~I~-T~~l~idL~tqd~~SD~~VtI~G~~  155 (190)
T PRK10893        121 TPDSQLRRIT-TDNAQINLVTQDVTSDDLVTLYGTT  155 (190)
T ss_pred             CCCCCCCEEE-CCCEEEECCCCEEECCCEEEEECCC
T ss_conf             8975453898-2758980466468638709998798


No 85 
>PRK07589 ornithine cyclodeaminase; Validated
Probab=26.60  E-value=38  Score=13.19  Aligned_cols=27  Identities=22%  Similarity=0.020  Sum_probs=22.8

Q ss_pred             EEECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             752255531166406566661178721
Q gi|254780752|r  433 LRQIPKVQGGLIAMDPRTGRILATIGG  459 (817)
Q Consensus       433 l~~~p~~q~a~V~id~~TG~IlA~vGg  459 (817)
                      -...|.+++-++..|+.||+.+|+.-|
T Consensus        79 ~~GLPtv~a~~~L~D~~TG~P~al~dg  105 (346)
T PRK07589         79 RRGLQTVMAFGVLADVDTGYPLLLSEM  105 (346)
T ss_pred             CCCCCCCEEEEEEEECCCCCEEEEECC
T ss_conf             138874138999985688977788523


No 86 
>PRK09793 methyl-accepting protein IV; Provisional
Probab=26.49  E-value=38  Score=13.18  Aligned_cols=26  Identities=23%  Similarity=0.165  Sum_probs=13.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97899999999999999999999999
Q gi|254780752|r    1 MYYRIVSFIGYFFGFATYSILGAILG   26 (817)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~   26 (817)
                      ||+||.---+.+++++++|++.++.+
T Consensus         1 Ml~nikI~t~L~~il~lf~ll~l~~~   26 (533)
T PRK09793          1 MFNRIRISTTLFLILILCGILQIGSN   26 (533)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99762489999999999999999999


No 87 
>TIGR00918 2A060602 transmembrane receptor Patched; InterPro: IPR004766   Patched (Ptc) is a Drosophila melanogaster (Fruit fly) membrane protein that plays a critical role in patterning embryonic and imaginal tissues. It constitutively inactivates the transcription of genes wingless, decapentaplegic, and patched itself. The secreted protein, hedgehog (Hh) induces transcription of genes by opposing the patched signaling pathway .    In humans, mutations affecting patched (Ptc) or smoothened (Smo) homologues that trigger ligand-independent activity of the Hedgehog (Hh) signalling pathway are associated with tumours such as basal cell carcinoma (BCC) and medulloblastoma .   Patched is associated with a complex belonging to the hedgehog pathway. Members of the complex include cubitus interruptus, sex-lethal, patched and smoothened. The complex is present at the plasma membrane and the association of patched changes depending on the activation state of the pathway . ; GO: 0008158 hedgehog receptor activity, 0016021 integral to membrane.
Probab=26.41  E-value=38  Score=13.17  Aligned_cols=123  Identities=17%  Similarity=0.191  Sum_probs=69.7

Q ss_pred             EEEEECCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHH--
Q ss_conf             666612560464179969788854543321461133873799999999998632047886-77611479998888770--
Q gi|254780752|r   63 MAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRR-PEGASTITQQVAKNFLL--  139 (817)
Q Consensus        63 i~~~~~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~-~qGgSTITQQlaKn~~l--  139 (817)
                      |-+--+++..+.+-+-+-.||.-|+-|+.=+=+....-=++.-        +=+. +|.- .+++--| -|..+.++.  
T Consensus       119 IQT~~~~g~nvLt~eAL~~HL~~a~~As~V~V~lY~~~W~L~~--------~Cyk-sg~p~~E~~y~i-eqile~L~PC~  188 (1215)
T TIGR00918       119 IQTPHQEGANVLTPEALLQHLDSALKASRVKVYLYNREWDLED--------LCYK-SGEPLTEGGYYI-EQILEKLFPCL  188 (1215)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHH--------HCCC-CCCCCCCHHHHH-HHHHHHHCCCE
T ss_conf             0267888785351899999999987437446897468546576--------5048-886420203689-99998528852


Q ss_pred             ---------------CCCCC----------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             ---------------88832----------------99999999999999866079999999720142674331099999
Q gi|254780752|r  140 ---------------TSNQT----------------MDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAA  188 (817)
Q Consensus       140 ---------------~~e~t----------------~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA  188 (817)
                                     ++|-|                ...=++|+-.-.-=|+--=.=|=.|-||++.-.|+|        
T Consensus       189 iiTPLDCFWEGakL~gPeg~~ylpG~np~l~WtnldP~~~l~elk~~~s~ekisfd~e~~ee~l~kA~vG~g--------  260 (1215)
T TIGR00918       189 IITPLDCFWEGAKLQGPEGTAYLPGKNPPLQWTNLDPASLLEELKQLASQEKISFDVESWEELLKKAAVGQG--------  260 (1215)
T ss_pred             EECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC--------
T ss_conf             645775310012033886216706888864121079899999963332220000011438999877410542--------


Q ss_pred             HHHHCCC---HHHCCCCCEE
Q ss_conf             9873542---3440302712
Q gi|254780752|r  189 LTYFNKS---VSELTIEEAA  205 (817)
Q Consensus       189 ~~YF~K~---~~dLtl~EaA  205 (817)
                        |-+|+   |.|++=+.+|
T Consensus       261 --Ym~rPCLnP~dp~CP~~A  278 (1215)
T TIGR00918       261 --YMERPCLNPADPDCPDTA  278 (1215)
T ss_pred             --CCCCCCCCCCCCCCCCCC
T ss_conf             --138788867756434788


No 88 
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=26.34  E-value=38  Score=13.16  Aligned_cols=161  Identities=18%  Similarity=0.243  Sum_probs=72.7

Q ss_pred             EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-CCCCEEEEEC-----CCCEEEEE
Q ss_conf             64065666611787213234443320012335665310000127887402466544-5652378803-----78526664
Q gi|254780752|r  444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASV-IMDAPIEVVS-----RGKIWKPE  517 (817)
Q Consensus       444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~-~~D~p~~~~~-----~~~~~~p~  517 (817)
                      |.++-..|+|+|++|-..-.++.+=+...+...|             +.|    ++ +++.++.-..     ..--|.|+
T Consensus        20 vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p-------------~~G----~I~~~g~~i~~~~~~~~~~~ig~v~Q   82 (211)
T cd03225          20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-------------TSG----EVLVDGKDLTKLSLKELRRKVGLVFQ   82 (211)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-------------CCC----CEEECCEECCCCCHHHHHCCEEEEEE
T ss_conf             1788849979999889999899999999646779-------------888----77899999997998998403899977


Q ss_pred             ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEE
Q ss_conf             12765442256666665304402258876259723521101355655567665634451000037767432201574403
Q gi|254780752|r  518 NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQ  597 (817)
Q Consensus       518 N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~  597 (817)
                      |.+..+. ..|+++-+..+....-  +...--.+.+.+.++.+|+...... .+..|-.++---+.+|.|   ++.    
T Consensus        83 ~p~~~~~-~~tv~e~i~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSGGqkQrv~iAra---l~~----  151 (211)
T cd03225          83 NPDDQFF-GPTVEEEVAFGLENLG--LPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGV---LAM----  151 (211)
T ss_pred             CCHHHCC-CCCHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCHHHHHC-CHHHCCHHHHHHHHHHHH---HHC----
T ss_conf             8325305-5869999999999869--9999999999999998699466638-954599989999999999---975----


Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf             5446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r  598 IRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA  667 (817)
Q Consensus       598 ~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg  667 (817)
                       +|.++                                  ..+++..-+|+.+...+.++|+..-+.|+.
T Consensus       152 -~P~il----------------------------------ilDEPTsgLD~~~~~~i~~~l~~l~~~g~t  186 (211)
T cd03225         152 -DPDIL----------------------------------LLDEPTAGLDPAGRRELLELLKKLKAEGKT  186 (211)
T ss_pred             -CCCEE----------------------------------EEECCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf             -99999----------------------------------997985558999999999999999978999


No 89 
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.11  E-value=38  Score=13.14  Aligned_cols=18  Identities=33%  Similarity=0.639  Sum_probs=14.9

Q ss_pred             CEEEEECCCCCCCEEEEE
Q ss_conf             116640656666117872
Q gi|254780752|r  441 GGLIAMDPRTGRILATIG  458 (817)
Q Consensus       441 ~a~V~id~~TG~IlA~vG  458 (817)
                      -.++.|||.||+|+|++-
T Consensus       196 ~~I~rI~p~sGrV~~wid  213 (262)
T COG3823         196 TRIARIDPDSGRVVAWID  213 (262)
T ss_pred             CCEEEECCCCCCEEEEEE
T ss_conf             405997378881899999


No 90 
>PRK08291 ornithine cyclodeaminase; Validated
Probab=25.82  E-value=39  Score=13.10  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.3

Q ss_pred             EECCCCCCEEEEECCCCCCCEEEE
Q ss_conf             522555311664065666611787
Q gi|254780752|r  434 RQIPKVQGGLIAMDPRTGRILATI  457 (817)
Q Consensus       434 ~~~p~~q~a~V~id~~TG~IlA~v  457 (817)
                      ...|..+|-+++.|+.||+.+|+.
T Consensus        82 ~glP~~~g~i~L~d~~TG~p~Ail  105 (330)
T PRK08291         82 LGLPSLNGLMLVLSARTGLVEALL  105 (330)
T ss_pred             CCCCCCCEEEEEEECCCCCEEEEE
T ss_conf             488765479999987889868998


No 91 
>pfam06510 DUF1102 Protein of unknown function (DUF1102). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=25.21  E-value=40  Score=13.03  Aligned_cols=10  Identities=40%  Similarity=0.760  Sum_probs=3.8

Q ss_pred             HHHHCCCCCE
Q ss_conf             3220157440
Q gi|254780752|r  587 AYAVFANGGK  596 (817)
Q Consensus       587 aya~~AN~G~  596 (817)
                      .|+.+.++|+
T Consensus        52 PY~yi~~~Gk   61 (183)
T pfam06510        52 PYVYLNNNGK   61 (183)
T ss_pred             CEEEECCCCE
T ss_conf             4589847984


No 92 
>pfam06259 DUF1023 Alpha/beta hydrolase of unknown function (DUF1023). Family of uncharacterized proteins found in Actinobacteria. Members of this family have an alpha/beta hydrolase fold.
Probab=25.20  E-value=40  Score=13.03  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=25.8

Q ss_pred             CCCEEEEEEEECCCCCCCCCCC-CC--CCCCHHHHHHHHHHHHC
Q ss_conf             6987999998266898278986-44--21217999999999974
Q gi|254780752|r  696 TPTLVVGVYVGYDIPAPLNNHA-TG--STLTAPIFNAFMKEALK  736 (817)
Q Consensus       696 tp~~~~~vWvG~D~~~~~~~~~-~G--~~~a~piw~~~m~~~~~  736 (817)
                      ....++.+|+|||-|....... +.  +..++|-...|++.+-.
T Consensus        60 ~~~~AvI~WlGYdaP~~~~~~a~~~~~A~~ga~~L~~F~~gL~a  103 (177)
T pfam06259        60 PNAVAVIAWLGYTPPSGGLWDVATDDLARAGAPRLNRLLRDLRA  103 (177)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99858999778779987653545807999989999999998750


No 93 
>pfam02023 SCAN SCAN domain. The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerisation.
Probab=24.42  E-value=41  Score=12.93  Aligned_cols=10  Identities=50%  Similarity=0.630  Sum_probs=3.8

Q ss_pred             HHCHHHHHHH
Q ss_conf             6079999999
Q gi|254780752|r  161 AYDKEKILEF  170 (817)
Q Consensus       161 ~~sK~eILe~  170 (817)
                      ..||+||||+
T Consensus        40 ~hTKEqIlEl   49 (93)
T pfam02023        40 IHTKEQILEL   49 (93)
T ss_pred             HCCHHHHHHH
T ss_conf             2239999999


No 94 
>pfam06637 PV-1 PV-1 protein (PLVAP). This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown.
Probab=23.80  E-value=42  Score=12.85  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999
Q gi|254780752|r    6 VSFIGYFFGFATYSILGAILGASIYIA   32 (817)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   32 (817)
                      +-++++||.|+.++-+.+|+|+.++..
T Consensus        22 wYYLryfFlFvSLIQfLIIlgLVLFmV   48 (442)
T pfam06637        22 WYYLRYFFLFVSLIQFLIILGLVLFMI   48 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             799999999999999999999999964


No 95 
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=23.79  E-value=37  Score=13.26  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=14.7

Q ss_pred             HHHHHHHC---CCCEEEEEECCCCCCC
Q ss_conf             25887625---9723521101355655
Q gi|254780752|r  541 TVRLAHNM---GMTVVADYAENFGIYD  564 (817)
Q Consensus       541 ~v~l~~~~---G~~~~~~~~~~~Gi~~  564 (817)
                      |+.|+.++   -.+..+|.+=+|||+.
T Consensus        24 Ai~LlK~~~~aKFDeTVeva~~LG~Dp   50 (227)
T TIGR01169        24 AIALLKETATAKFDETVEVAIRLGIDP   50 (227)
T ss_pred             HHHHHHHCCCCCCCCEEEEEEECCCCC
T ss_conf             999997326554334178888747588


No 96 
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase; InterPro: IPR012752    This entry represents the WecD protein (formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetyltransferases..
Probab=23.60  E-value=43  Score=12.83  Aligned_cols=77  Identities=23%  Similarity=0.297  Sum_probs=49.3

Q ss_pred             EEECCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCHHH---HHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf             640656666117872132344433200-12335665310000---12788740246654456523788037852666412
Q gi|254780752|r  444 IAMDPRTGRILATIGGFSYSQSEFNRS-TQAMRQPGSCFKPI---VYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENY  519 (817)
Q Consensus       444 V~id~~TG~IlA~vGg~d~~~~~~NrA-~~~~rqpGSt~KP~---vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N~  519 (817)
                      ..|.-.||++..+|.=|+-+.+.= |- .-+. =||-++|=+   .+.+|                      ..|+    
T Consensus       111 L~~~da~g~p~G~VtLR~L~d~dA-RIGLLav-~PG~~~rGiG~~LM~~A----------------------~~Wc----  162 (201)
T TIGR02382       111 LLLRDAAGDPRGYVTLRELDDSDA-RIGLLAV-FPGVTIRGIGARLMALA----------------------KAWC----  162 (201)
T ss_pred             HHHHCCCCCCEEEEEEEECCCCCC-CEECCCC-CCCCCEECHHHHHHHHH----------------------HHHH----
T ss_conf             522244779404687400478765-3301003-78741204568999999----------------------9999----


Q ss_pred             CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC
Q ss_conf             76544225666666530440225887625972
Q gi|254780752|r  520 SKNFSGASTLRFGLEKSRNLMTVRLAHNMGMT  551 (817)
Q Consensus       520 ~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~  551 (817)
                        ..+|.++||-|.+.| ||.+.|+.-+-|..
T Consensus       163 --~~~Gl~rLRVATQ~g-N~AALrlYirsGA~  191 (201)
T TIGR02382       163 --RRRGLIRLRVATQMG-NVAALRLYIRSGAS  191 (201)
T ss_pred             --HHCCCEEEEHHHHHH-HHHHHHHHHHCCCC
T ss_conf             --875982440333246-79999999863897


No 97 
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=23.46  E-value=43  Score=12.81  Aligned_cols=10  Identities=30%  Similarity=0.883  Sum_probs=3.9

Q ss_pred             CCCHHHHHHH
Q ss_conf             1211248877
Q gi|254780752|r  333 IDLKKDWGNT  342 (817)
Q Consensus       333 ~~~~~~~~~~  342 (817)
                      ++....|.+.
T Consensus       220 ~~~~~hWenl  229 (650)
T PTZ00112        220 FNIKTHWDNL  229 (650)
T ss_pred             CCCCCCHHHH
T ss_conf             6641127675


No 98 
>KOG4499 consensus
Probab=22.75  E-value=44  Score=12.72  Aligned_cols=11  Identities=27%  Similarity=0.555  Sum_probs=6.9

Q ss_pred             CCCEEEEEEEE
Q ss_conf             69879999982
Q gi|254780752|r  696 TPTLVVGVYVG  706 (817)
Q Consensus       696 tp~~~~~vWvG  706 (817)
                      ||+.++.+..|
T Consensus       253 t~qitsccFgG  263 (310)
T KOG4499         253 TPQITSCCFGG  263 (310)
T ss_pred             CCCEEEEEECC
T ss_conf             88547887338


No 99 
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.63  E-value=40  Score=13.01  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=25.3

Q ss_pred             EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             640656666117872132344433200123356653
Q gi|254780752|r  444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGS  479 (817)
Q Consensus       444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGS  479 (817)
                      |.+|-..|||+|++|-..-.+|.+=++..+..+|.|
T Consensus        20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~   55 (259)
T COG4559          20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS   55 (259)
T ss_pred             CCEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf             315416872799988898658889998617637888


No 100
>pfam10925 DUF2680 Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known.
Probab=22.56  E-value=45  Score=12.70  Aligned_cols=29  Identities=41%  Similarity=0.410  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             46678998887666542011125688875
Q gi|254780752|r  224 KAAIARRNWVIDRMEENGYISQEQALVAK  252 (817)
Q Consensus       224 ~~a~~Rr~~VL~~M~~~g~It~~e~~~a~  252 (817)
                      +...+-|.-+++..++.|.||+++.+.-+
T Consensus        14 kqi~el~Kqii~KyVe~G~iT~eQa~~i~   42 (59)
T pfam10925        14 KQIAELRKQVIDKYVEAGVITKEQADHIK   42 (59)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999999999982756499999999


No 101
>COG4448 AnsA L-asparaginase II [Amino acid transport and metabolism]
Probab=22.41  E-value=45  Score=12.68  Aligned_cols=44  Identities=25%  Similarity=0.486  Sum_probs=30.5

Q ss_pred             CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             53116640656666117872132344433200123356653100001278874024
Q gi|254780752|r  439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGY  494 (817)
Q Consensus       439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~  494 (817)
                      -++++||+| ..|.++-..|..+  ...|         |-|.+|||-..+-.|.|-
T Consensus        26 H~g~a~V~D-~dGr~l~~~Gd~e--~~~F---------pRSA~K~~QALplvetGa   69 (339)
T COG4448          26 HRGAAVVVD-GDGRVLFSAGDSE--RPTF---------PRSALKAFQALPLVETGA   69 (339)
T ss_pred             CEEEEEEEC-CCCCEEEECCCCC--CCCC---------CHHHHHHHHHCCCCCCCC
T ss_conf             012589984-8996787416666--7756---------166655655333101464


No 102
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.90  E-value=46  Score=12.61  Aligned_cols=77  Identities=22%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-----HHHHHHHHHHHCCCHHHH
Q ss_conf             332111114667899888766654201112568887530111244543222345715-----679988531100124331
Q gi|254780752|r  216 NYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEY-----FAEEVRRQLIDRYGEKAL  290 (817)
Q Consensus       216 ~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~y-----f~e~V~~~l~~~~ge~~l  290 (817)
                      -|||-.+|..--.+|..+-.++.+.=-             |.+         ..++|     |.+.|+       |-+..
T Consensus        34 FYNPNIhP~~EY~~R~~e~~~f~~~~~-------------i~~---------iegdY~~~~~w~~~vK-------g~E~E   84 (204)
T COG1636          34 FYNPNIHPLSEYELRKEEVKRFAEKFG-------------INF---------IEGDYEDLEKWFERVK-------GMEDE   84 (204)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHCC-------------CEE---------EECCCCCHHHHHHHHH-------CCHHC
T ss_conf             748998926999999999999999829-------------705---------5357555899999961-------62007


Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             2573289852488898999999998767654
Q gi|254780752|r  291 YEDGLSIRTSLDPQLQLYARKALQNGLINYD  321 (817)
Q Consensus       291 ~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d  321 (817)
                      -.+|.+-+...|.++-..|+.|...+...+.
T Consensus        85 pE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ft  115 (204)
T COG1636          85 PEGGKRCTMCFDMRLEKTAKKAKELGFDVFT  115 (204)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             7778423778999899999999982962101


No 103
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854    This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=21.86  E-value=20  Score=15.02  Aligned_cols=69  Identities=25%  Similarity=0.309  Sum_probs=41.6

Q ss_pred             EEEECCCCC----CCCCCCCCCCCCCCCE---EHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             211013556----5556766563445100---003776743220157440354466676410244301335853235566
Q gi|254780752|r  554 ADYAENFGI----YDKMLPVLPMSLGAGE---TTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN  626 (817)
Q Consensus       554 ~~~~~~~Gi----~~~~~~~~s~alG~~~---vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~  626 (817)
                      .++|+..|.    ..+..|...-..|.+|   +-|+.       +||.|+.+=                           
T Consensus       238 NE~A~~sg~~i~l~E~~iPV~eeV~gaCE~LGldPl~-------lANEG~~v~---------------------------  283 (345)
T TIGR02124       238 NEIAESSGVGIELEEEKIPVKEEVKGACELLGLDPLY-------LANEGKLVL---------------------------  283 (345)
T ss_pred             HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHH-------HHCCCEEEE---------------------------
T ss_conf             9999961992799852478837899999861703254-------204762899---------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHC-CCCCCE
Q ss_conf             666665545546755435358999999999999987348043210-599604
Q gi|254780752|r  627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKV-RLNRPV  677 (817)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~-~~~~~i  677 (817)
                                        +++++.|..+..+|+...   -|+.|. +.|.-+
T Consensus       284 ------------------~V~~E~A~~vLe~lk~hp---~G~~A~YiIG~V~  314 (345)
T TIGR02124       284 ------------------AVPPEAAEKVLEILKSHP---LGKDAAYIIGEVV  314 (345)
T ss_pred             ------------------EECHHHHHHHHHHHHHCC---CCCCCCEEEEEEE
T ss_conf             ------------------828377999999986077---6433215630147


No 104
>pfam11084 DUF2621 Protein of unknown function (DUF2621). This family is conserved in the Bacillaceae family. Several members are named as YneK. The function is not known.
Probab=21.81  E-value=46  Score=12.60  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=18.4

Q ss_pred             CCCCCHHHHHHH-HHHHH-CCCC---CHHHHHHHH
Q ss_conf             776114799988-88770-8883---299999999
Q gi|254780752|r  123 PEGASTITQQVA-KNFLL-TSNQ---TMDRKIKEI  152 (817)
Q Consensus       123 ~qGgSTITQQla-Kn~~l-~~e~---t~~RK~~E~  152 (817)
                      ..++|.||+.++ |-+.+ ++.|   -+.+|++|-
T Consensus        96 ~e~a~~it~dliIrGYI~ATPKRDhkFL~k~L~ek  130 (141)
T pfam11084        96 KEKASRITLDLIIRGYILATPKRDHKFLRKKLKEK  130 (141)
T ss_pred             HCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHH
T ss_conf             72701652878574311217764449999999983


No 105
>KOG0506 consensus
Probab=21.67  E-value=47  Score=12.58  Aligned_cols=70  Identities=23%  Similarity=0.235  Sum_probs=44.3

Q ss_pred             CCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHH
Q ss_conf             44510000377674322015744035446667641024430133585323556666666554554675543535899999
Q gi|254780752|r  573 SLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAY  652 (817)
Q Consensus       573 alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~  652 (817)
                      -|-+.|+|---+|-.-+|+||||+-  |.                                       ..+++++++.+.
T Consensus       368 QlCSiEvtCes~aVMAaTLANGGvc--Pi---------------------------------------t~E~~l~~~~cR  406 (622)
T KOG0506         368 QLCSIEVTCESAAVMAATLANGGVC--PI---------------------------------------TGERCLSPRACR  406 (622)
T ss_pred             HHHEEEEECCHHHHHHHHHHCCCCC--CC---------------------------------------CCCCCCCCHHHH
T ss_conf             3222453011789999997538837--78---------------------------------------777036837777


Q ss_pred             HHHHHHHHHHH-CCCEEHHCCCCCCEEEEECCCC
Q ss_conf             99999999873-4804321059960467604678
Q gi|254780752|r  653 QITSMLEGVIK-HGTATGKVRLNRPVAGKTGTTS  685 (817)
Q Consensus       653 ~~~~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~  685 (817)
                      -+.++|..--- .-+|.-|...|.|  +|.|-+-
T Consensus       407 dtLSLMySCGMYD~SGqFaFhVGLP--AKSgVsG  438 (622)
T KOG0506         407 DTLSLMYSCGMYDFSGQFAFHVGLP--AKSGVSG  438 (622)
T ss_pred             HHHHHHHHCCCCCCCCCEEEEECCC--CCCCCCC
T ss_conf             8999987526622456357885575--3246665


No 106
>TIGR02099 TIGR02099 conserved hypothetical protein TIGR02099; InterPro: IPR011836    This entry describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane..
Probab=21.64  E-value=47  Score=12.58  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCC
Q ss_conf             999999999999999999999999987046989788512477887799907894
Q gi|254780752|r    8 FIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGA   61 (817)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~   61 (817)
                      +.++++.+++++++++++.+++..+.    ||.+++   |+++....|-.+-|.
T Consensus         3 L~~~~~~l~A~~lV~~AL~Vs~~r~l----LP~~d~---~R~~i~~~~~s~~G~   49 (1362)
T TIGR02099         3 LRRIALSLLALILVVAALLVSLLRQL----LPLVDE---YRPQIEQKLSSALGI   49 (1362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHCC
T ss_conf             48899999999999999999999986----234554---469999988775188


No 107
>pfam10758 DUF2586 Protein of unknown function (DUF2586). This bacterial family of proteins has no known function.
Probab=21.61  E-value=44  Score=12.73  Aligned_cols=18  Identities=33%  Similarity=0.287  Sum_probs=8.3

Q ss_pred             CCCCCCHHHH--HHHHHHCC
Q ss_conf             6653100001--27887402
Q gi|254780752|r  476 QPGSCFKPIV--YAAALDSG  493 (817)
Q Consensus       476 qpGSt~KP~v--y~~Ale~G  493 (817)
                      +.-|.=+|+.  -+.||+.-
T Consensus       210 P~D~~g~~l~lAtl~aL~~~  229 (363)
T pfam10758       210 PVDKDGKPLTLATLAALDAA  229 (363)
T ss_pred             CCCCCCCCCCHHHHHHHHHC
T ss_conf             84889887538999999863


No 108
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264   Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system  common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=21.56  E-value=27  Score=14.12  Aligned_cols=44  Identities=25%  Similarity=0.370  Sum_probs=29.4

Q ss_pred             CCEEEEE---CCCCCCCEEE-EECCCCCCCCC---------------------CCCCCCCCCCCCCCHH
Q ss_conf             3116640---6566661178-72132344433---------------------2001233566531000
Q gi|254780752|r  440 QGGLIAM---DPRTGRILAT-IGGFSYSQSEF---------------------NRSTQAMRQPGSCFKP  483 (817)
Q Consensus       440 q~a~V~i---d~~TG~IlA~-vGg~d~~~~~~---------------------NrA~~~~rqpGSt~KP  483 (817)
                      ..-++||   |.++.+|+|+ .|-+||...-|                     ||-.+....+|||-=+
T Consensus        74 ~TKVIViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~  142 (451)
T TIGR02915        74 DTKVIVITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALE  142 (451)
T ss_pred             CCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             804899866898388999964375101357875789999999988888888876998740688741036


No 109
>TIGR03639 cas1_NMENI CRISPR-associated protein Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=21.44  E-value=47  Score=12.55  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=22.3

Q ss_pred             HHCHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHC
Q ss_conf             60799999997201426743310999-9998735
Q gi|254780752|r  161 AYDKEKILEFYLNEIFFGFNSYGIAS-AALTYFN  193 (817)
Q Consensus       161 ~~sK~eILe~YLN~v~~G~~~yGv~a-AA~~YF~  193 (817)
                      ...+.+.|+.+.+.+-.|. .-|+|+ ||+.||+
T Consensus       123 ~~~~~~~l~~~~~~i~~~d-~~~~EG~aA~~Yf~  155 (278)
T TIGR03639       123 LDEDSEKLKNLAKKVESGD-KTNREAHAAKLYFK  155 (278)
T ss_pred             CCCHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHH
T ss_conf             7634899999998636577-40369999999999


No 110
>TIGR00462 genX lysyl-tRNA synthetase homolog GenX; InterPro: IPR004525   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   This entry represents lysyl-tRNA synthetases from bacteria, as well as other related proteins. Escherichia coli, Haemophilus influenzae, and Aquifex aeolicus each have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS, so they appear to be orthologous. The protein is termed PoxA or GenX after its designation in E. coli. Its function is unknown.; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=21.43  E-value=26  Score=14.31  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=23.2

Q ss_pred             EEECHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             464179969788854543321461133873
Q gi|254780752|r   72 LFLPIQIIPSHVKYAFVSAEDKNFYYHSGV  101 (817)
Q Consensus        72 ~~v~~~~ip~~l~~A~iA~ED~rFy~H~Gv  101 (817)
                      .|-|-.+|+-+|+.|-+-+|=|+||...|+
T Consensus        11 ~W~Psa~i~n~LkRa~~i~~iR~FF~e~G~   40 (330)
T TIGR00462        11 AWQPSADIKNLLKRAKIIAEIRKFFKERGL   40 (330)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             578652246778899999999998861784


No 111
>pfam02743 Cache_1 Cache domain.
Probab=21.34  E-value=47  Score=12.54  Aligned_cols=12  Identities=17%  Similarity=0.357  Sum_probs=4.5

Q ss_pred             EECCCCCEEEEE
Q ss_conf             990789496666
Q gi|254780752|r   55 IHAGNGALMAEY   66 (817)
Q Consensus        55 iyd~dG~~i~~~   66 (817)
                      |||.||+++|-+
T Consensus        21 i~d~~g~~~GVv   32 (81)
T pfam02743        21 VYDRDGDLLGVI   32 (81)
T ss_pred             EECCCCCEEEEE
T ss_conf             999999899999


No 112
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=21.05  E-value=48  Score=12.50  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             64065666611787213234443320012335665
Q gi|254780752|r  444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPG  478 (817)
Q Consensus       444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpG  478 (817)
                      |.++-.-|+++|++|...-.+|.+=++..+.-+||
T Consensus        22 Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~   56 (254)
T PRK10418         22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAG   56 (254)
T ss_pred             EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf             07289899999999999878999999995799889


No 113
>TIGR02042 sir sulfite reductase, ferredoxin dependent; InterPro: IPR011787    Distantly related to the iron-sulphur hemoprotein of sulphite reductase (NADPH) found in Proteobacteria and Eubacteria, sulphite reductase (ferredoxin) is a cyanobacterial and plant monomeric enzyme that also catalyzes the reduction of sulphite to sulphide.; GO: 0020037 heme binding, 0050311 sulfite reductase (ferredoxin) activity, 0051539 4 iron 4 sulfur cluster binding.
Probab=20.96  E-value=37  Score=13.23  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             HHHHHHHHHCCCHHHHC---CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             99885311001243312---573289852488898999999998
Q gi|254780752|r  275 EEVRRQLIDRYGEKALY---EDGLSIRTSLDPQLQLYARKALQN  315 (817)
Q Consensus       275 e~V~~~l~~~~ge~~l~---~~Gl~I~TTiD~~lQ~~Ae~ai~~  315 (817)
                      -++..+|.+.||...|.   +.++..|=-|-.+|......+|+|
T Consensus        86 YL~lD~LAD~yG~gTLR~TTRQ~FQlHG~LK~nLKtv~~~Iv~N  129 (583)
T TIGR02042        86 YLTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVKN  129 (583)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998887873761111222101333224478799999999986


No 114
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=20.90  E-value=48  Score=12.48  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=36.4

Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             4401576433211111466789988876665420111256888753011124454322234571567998853
Q gi|254780752|r  208 AALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQ  280 (817)
Q Consensus       208 Agi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~  280 (817)
                      +-+++--+..+|   |+-+..-|..|++.|  +|.|+.||......+.+....         -||++-+.++.
T Consensus        10 ~tLi~l~s~~~~---pe~~~~Vr~LV~~L~--~~~i~~EeF~~~Lq~~lns~p---------qP~lvPFLK~s   68 (92)
T smart00549       10 TTLIQLSNDISQ---PEVAERVRTLVLGLV--NGTITAEEFTSRLQEALNSPL---------QPYLIPFLKNS   68 (92)
T ss_pred             HHHHHHHCCCCC---CHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCC---------CCHHHHHHHHH
T ss_conf             999998667997---079899999999998--188789999999999865999---------72129999970


No 115
>pfam06860 consensus
Probab=20.58  E-value=49  Score=12.43  Aligned_cols=36  Identities=14%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCH
Q ss_conf             329999999999999986607999999972014267433109999998735423
Q gi|254780752|r  143 QTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSV  196 (817)
Q Consensus       143 ~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~  196 (817)
                      |+..++|++++.+.--+..+.-               -+   -.||+.||.-.-
T Consensus        24 k~~I~~Ik~av~~YaqD~SLKG---------------kA---v~aSK~Yf~~TY   59 (170)
T pfam06860        24 KKQITAIKNAVIAYLQDNSLKG---------------EA---ISASKNYYQMTY   59 (170)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCC---------------HH---HHHHHHHHHHHH
T ss_conf             9999999999999866356443---------------14---688888898978


No 116
>COG3726 AhpA Uncharacterized membrane protein affecting hemolysin expression [General function prediction only]
Probab=20.57  E-value=6  Score=18.51  Aligned_cols=61  Identities=18%  Similarity=0.164  Sum_probs=25.7

Q ss_pred             CEEEECHHHCCH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             604641799697--8885454332146113387379999999999863204788677611479998888770
Q gi|254780752|r   70 NRLFLPIQIIPS--HVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLL  139 (817)
Q Consensus        70 ~R~~v~~~~ip~--~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l  139 (817)
                      .|..+-+++.-+  .+-+|-|-.+|-+---|.|=..         |+|...+=....-|+-++||+|.-++.
T Consensus        72 e~l~alln~l~k~~~VldAsIY~~~g~LlA~ag~~~---------~vR~~l~Ldg~~~g~y~nqQiVEPI~~  134 (214)
T COG3726          72 ERLNALLNQLTKESLVLDASIYDEDGDLLARAGSSV---------NVRDRLALDGKTAGLYFNQQIVEPIAG  134 (214)
T ss_pred             HHHHHHHHHHHCCCEEEECEEECCCCHHHHHCCCCC---------CHHHHHHCCCCCCCCCCCCEEECCCCC
T ss_conf             999999998720652420001335334567416630---------021554147888866334532100235


No 117
>TIGR02647 DNA conserved hypothetical protein TIGR02647; InterPro: IPR013468    Proteins in this entry are found, so far, only in the Gammaproteobacteria. Their function is currently unknown. The location on the chromosome is usually not far from housekeeping genes. Some proteins have been annotated in public databases as DNA-binding protein inhibitors, putative transcriptional regulators, or hypothetical DNA binding proteins..
Probab=20.30  E-value=50  Score=12.40  Aligned_cols=37  Identities=16%  Similarity=0.416  Sum_probs=26.7

Q ss_pred             HHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             10012433125732898524888989999999987676
Q gi|254780752|r  282 IDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLIN  319 (817)
Q Consensus       282 ~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~  319 (817)
                      ...|.-+. -..|+||+.+-++.++.++.+-.+++|..
T Consensus        14 L~lF~l~~-~~~G~Kv~~~A~~~~~aA~~RL~~K~L~~   50 (77)
T TIGR02647        14 LALFNLSS-TQEGLKVHSTASPAAVAAAKRLYEKGLTD   50 (77)
T ss_pred             HHHHCCCC-CCCCCEEECHHHHHHHHHHHHHHHCCCCC
T ss_conf             98733433-23773010010378999999887337755


Done!