Query gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 817 No_of_seqs 233 out of 5297 Neff 7.0 Searched_HMMs 39220 Date Sun May 29 23:25:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780752.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 COG5009 MrcA Membrane carboxyp 100.0 0 0 1670.5 53.3 791 5-817 1-797 (797) 2 PRK11636 mrcA peptidoglycan sy 100.0 0 0 1603.6 53.7 767 6-790 1-838 (850) 3 TIGR02074 PBP_1a_fam penicilli 100.0 0 0 1462.9 36.4 637 70-737 1-700 (700) 4 PRK09506 mrcB penicillin-bindi 100.0 0 0 1300.4 44.8 575 68-786 208-792 (839) 5 COG0744 MrcB Membrane carboxyp 100.0 0 0 1165.7 48.3 562 39-747 42-609 (661) 6 PRK11240 penicillin-binding pr 100.0 0 0 1156.3 45.3 562 50-782 40-616 (770) 7 TIGR02071 PBP_1b penicillin-bi 100.0 0 0 1162.4 32.8 576 68-781 144-739 (742) 8 TIGR02073 PBP_1c penicillin-bi 100.0 0 0 983.0 34.5 593 50-789 9-634 (786) 9 COG4953 PbpC Membrane carboxyp 100.0 0 0 903.4 40.0 561 51-784 35-606 (733) 10 PRK13481 glycosyltransferase; 100.0 0 0 544.5 19.1 183 68-254 77-266 (269) 11 PRK00056 mtgA monofunctional b 100.0 0 0 489.9 18.4 225 2-240 2-226 (226) 12 TIGR03423 pbp2_mrdA penicillin 100.0 0 0 463.3 26.5 268 440-737 248-592 (592) 13 pfam00905 Transpeptidase Penic 100.0 0 0 468.6 17.3 258 441-732 1-296 (296) 14 pfam00912 Transgly Transglycos 100.0 0 0 452.0 13.4 174 59-238 1-174 (174) 15 PRK10795 penicillin-binding pr 100.0 0 0 417.1 29.2 268 440-738 270-615 (619) 16 COG0768 FtsI Cell division pro 100.0 0 0 397.1 27.4 267 440-738 267-592 (599) 17 TIGR02214 spoVD_pbp stage V sp 100.0 0 0 370.4 16.6 271 441-739 249-583 (660) 18 TIGR02070 mono_pep_trsgly mono 100.0 0 0 377.5 9.8 169 70-241 54-226 (228) 19 COG2602 Beta-lactamase class D 98.8 4.1E-08 1.1E-12 72.7 9.4 168 473-705 52-227 (254) 20 PRK11669 pbpG D-alanyl-D-alani 97.6 0.00019 4.7E-09 48.4 5.9 131 441-590 41-184 (308) 21 pfam00768 Peptidase_S11 D-alan 97.3 0.0036 9.1E-08 39.9 10.1 132 442-592 14-166 (241) 22 PRK10001 D-alanyl-D-alanine ca 96.0 0.0046 1.2E-07 39.2 2.6 132 441-592 40-195 (400) 23 COG2367 PenP Beta-lactamase cl 95.9 0.13 3.4E-06 29.5 10.8 109 439-564 63-180 (329) 24 PRK00971 glutaminase; Provisio 95.5 0.16 4.2E-06 28.9 8.8 100 576-730 197-298 (308) 25 PRK10793 D-alanyl-D-alanine ca 95.5 0.0059 1.5E-07 38.4 1.4 131 442-592 48-202 (403) 26 PRK11397 dacD D-alanyl-D-alani 95.2 0.012 3E-07 36.5 2.1 136 442-592 40-194 (390) 27 pfam04960 Glutaminase Glutamin 94.4 0.17 4.5E-06 28.7 6.5 101 576-731 175-278 (286) 28 COG1686 DacC D-alanyl-D-alanin 94.1 0.043 1.1E-06 32.8 2.8 135 441-593 39-190 (389) 29 PRK12356 glutaminase; Reviewed 94.1 0.19 4.8E-06 28.4 6.1 103 576-733 200-304 (319) 30 PRK12357 glutaminase; Reviewed 93.9 0.22 5.5E-06 28.1 6.1 97 576-727 205-313 (326) 31 PRK11113 D-alanyl-D-alanine ca 85.2 0.57 1.5E-05 25.3 2.1 62 528-592 298-378 (477) 32 COG2066 GlsA Glutaminase [Amin 83.4 3.1 8E-05 20.4 8.3 123 554-734 173-303 (309) 33 pfam05088 Bac_GDH Bacterial NA 80.5 4 0.0001 19.7 6.8 12 173-184 153-164 (1526) 34 pfam06089 Asparaginase_II L-as 77.6 2.7 6.8E-05 20.8 3.3 45 439-495 14-58 (325) 35 pfam00144 Beta-lactamase Beta- 73.3 5.5 0.00014 18.7 3.9 81 448-541 22-108 (327) 36 TIGR02814 pfaD_fam PfaD family 69.7 4.2 0.00011 19.5 2.7 69 199-267 101-193 (449) 37 cd04742 NPD_FabD 2-Nitropropan 67.9 6.8 0.00017 18.1 3.4 33 231-263 152-184 (418) 38 TIGR01696 deoB phosphopentomut 62.9 4.2 0.00011 19.5 1.6 33 281-313 150-182 (404) 39 COG1123 ATPase components of v 61.7 5.5 0.00014 18.7 2.0 194 444-706 310-506 (539) 40 COG2027 DacB D-alanyl-D-alanin 59.3 11 0.00027 16.9 3.1 62 528-592 298-377 (470) 41 pfam06774 consensus 57.5 8.7 0.00022 17.4 2.4 59 70-135 15-73 (97) 42 pfam02113 Peptidase_S13 D-Ala- 54.7 12 0.00032 16.4 2.8 63 527-592 233-312 (383) 43 PRK12361 hypothetical protein; 54.1 14 0.00036 16.0 3.1 114 176-316 182-296 (546) 44 PRK11289 ampC beta-lactamase; 53.5 14 0.00036 16.0 3.6 14 473-486 83-96 (387) 45 pfam00901 Orbi_VP5 Orbivirus o 50.9 16 0.0004 15.7 4.0 92 77-171 3-117 (508) 46 TIGR02415 23BDH acetoin reduct 50.0 16 0.00041 15.7 2.8 25 549-573 117-142 (258) 47 pfam05279 Asp-B-Hydro_N Aspart 49.4 17 0.00042 15.6 2.9 26 31-61 28-53 (232) 48 TIGR01371 met_syn_B12ind 5-met 49.1 13 0.00034 16.2 2.2 41 693-743 705-745 (778) 49 PRK06199 ornithine cyclodeamin 44.6 20 0.0005 15.1 2.7 26 434-459 106-131 (379) 50 PRK06823 ornithine cyclodeamin 44.1 18 0.00045 15.3 2.3 24 434-457 78-101 (315) 51 TIGR02928 TIGR02928 orc1/cdc6 43.0 12 0.0003 16.5 1.2 19 297-315 80-98 (383) 52 pfam06491 DUF1094 Protein of u 41.7 22 0.00055 14.8 2.9 42 46-87 53-94 (96) 53 PRK06046 alanine dehydrogenase 41.7 20 0.0005 15.1 2.2 26 434-459 80-105 (326) 54 pfam02423 OCD_Mu_crystall Orni 41.1 21 0.00053 14.9 2.2 25 435-459 81-105 (312) 55 TIGR01009 rpsC_bact ribosomal 39.6 20 0.00052 15.0 2.0 22 758-781 160-181 (217) 56 PRK07340 ornithine cyclodeamin 39.0 23 0.00059 14.6 2.2 26 434-459 76-101 (304) 57 PRK13748 putative mercuric red 38.6 24 0.00061 14.5 2.3 15 175-189 102-116 (561) 58 PRK06141 ornithine cyclodeamin 38.5 24 0.0006 14.5 2.2 25 435-459 77-101 (313) 59 TIGR01990 bPGM beta-phosphoglu 37.8 6.3 0.00016 18.3 -0.8 63 530-593 69-138 (190) 60 COG5101 CRM1 Importin beta-rel 37.8 14 0.00036 16.0 1.0 14 186-199 360-373 (1053) 61 TIGR02431 pcaR_pcaU beta-ketoa 37.1 5.5 0.00014 18.7 -1.2 45 189-248 15-59 (252) 62 COG3462 Predicted membrane pro 36.3 18 0.00047 15.3 1.3 17 1-17 1-17 (117) 63 pfam05096 Glu_cyclase_2 Glutam 35.9 23 0.00059 14.6 1.8 17 441-457 195-211 (264) 64 PRK08618 ornithine cyclodeamin 35.6 27 0.00068 14.2 2.3 25 435-459 79-103 (325) 65 TIGR02041 CysI sulfite reducta 35.4 12 0.0003 16.6 0.2 25 544-568 300-326 (550) 66 PRK10622 pheA bifunctional cho 35.3 27 0.00069 14.1 5.2 54 144-203 72-135 (386) 67 PRK05362 phosphopentomutase; P 34.6 5.9 0.00015 18.5 -1.4 33 280-312 138-170 (393) 68 TIGR01974 NDH_I_L proton-trans 33.2 19 0.00048 15.2 1.0 16 475-490 375-392 (691) 69 COG1124 DppF ABC-type dipeptid 32.6 30 0.00076 13.9 3.7 163 444-663 26-189 (252) 70 PRK11267 biopolymer transport 32.5 30 0.00076 13.9 7.1 77 33-115 44-123 (141) 71 COG1015 DeoB Phosphopentomutas 32.5 15 0.00037 15.9 0.3 34 280-313 138-171 (397) 72 pfam09653 consensus 31.8 29 0.00075 13.9 1.8 38 281-319 12-49 (75) 73 PTZ00318 NADH dehydrogenase; P 31.5 31 0.00079 13.7 5.4 92 220-315 146-245 (514) 74 PRK03642 hypothetical protein; 31.5 31 0.00079 13.8 1.8 19 579-597 302-320 (432) 75 COG0444 DppD ABC-type dipeptid 31.3 20 0.00052 15.0 0.9 29 639-667 177-206 (316) 76 pfam09693 Phage_XkdX Phage unc 31.2 27 0.0007 14.1 1.5 21 234-254 18-38 (40) 77 pfam05120 GvpG Gas vesicle pro 30.5 32 0.00082 13.6 2.7 28 225-252 31-58 (80) 78 TIGR03064 sortase_srtB sortase 29.5 24 0.0006 14.5 1.0 17 87-103 84-100 (232) 79 PRK11512 DNA-binding transcrip 28.9 5.5 0.00014 18.7 -2.3 74 170-247 7-88 (144) 80 pfam09317 DUF1974 Domain of un 28.6 35 0.00089 13.4 4.2 25 92-116 27-51 (284) 81 pfam09339 HTH_IclR IclR helix- 28.3 6.9 0.00018 18.1 -1.9 44 188-246 8-51 (52) 82 KOG2263 consensus 27.7 18 0.00046 15.3 0.1 20 644-663 574-593 (765) 83 COG1131 CcmA ABC-type multidru 27.1 37 0.00094 13.3 2.0 159 444-665 24-186 (293) 84 PRK10893 hypothetical protein; 26.9 37 0.00095 13.2 3.9 35 476-511 121-155 (190) 85 PRK07589 ornithine cyclodeamin 26.6 38 0.00096 13.2 2.2 27 433-459 79-105 (346) 86 PRK09793 methyl-accepting prot 26.5 38 0.00096 13.2 3.7 26 1-26 1-26 (533) 87 TIGR00918 2A060602 transmembra 26.4 38 0.00097 13.2 1.6 123 63-205 119-278 (1215) 88 cd03225 ABC_cobalt_CbiO_domain 26.3 38 0.00097 13.2 2.4 161 444-667 20-186 (211) 89 COG3823 Glutamine cyclotransfe 26.1 38 0.00098 13.1 1.9 18 441-458 196-213 (262) 90 PRK08291 ornithine cyclodeamin 25.8 39 0.00099 13.1 2.3 24 434-457 82-105 (330) 91 pfam06510 DUF1102 Protein of u 25.2 40 0.001 13.0 3.1 10 587-596 52-61 (183) 92 pfam06259 DUF1023 Alpha/beta h 25.2 40 0.001 13.0 4.0 41 696-736 60-103 (177) 93 pfam02023 SCAN SCAN domain. Th 24.4 41 0.0011 12.9 2.2 10 161-170 40-49 (93) 94 pfam06637 PV-1 PV-1 protein (P 23.8 42 0.0011 12.9 4.0 27 6-32 22-48 (442) 95 TIGR01169 rplA_bact ribosomal 23.8 37 0.00094 13.3 1.1 24 541-564 24-50 (227) 96 TIGR02382 wecD_rffC TDP-D-fuco 23.6 43 0.0011 12.8 2.1 77 444-551 111-191 (201) 97 PTZ00112 origin recognition co 23.5 43 0.0011 12.8 1.6 10 333-342 220-229 (650) 98 KOG4499 consensus 22.8 44 0.0011 12.7 2.9 11 696-706 253-263 (310) 99 COG4559 ABC-type hemin transpo 22.6 40 0.001 13.0 1.1 36 444-479 20-55 (259) 100 pfam10925 DUF2680 Protein of u 22.6 45 0.0011 12.7 3.3 29 224-252 14-42 (59) 101 COG4448 AnsA L-asparaginase II 22.4 45 0.0011 12.7 2.0 44 439-494 26-69 (339) 102 COG1636 Uncharacterized protei 21.9 46 0.0012 12.6 4.3 77 216-321 34-115 (204) 103 TIGR02124 hypE hydrogenase exp 21.9 20 0.00051 15.0 -0.6 69 554-677 238-314 (345) 104 pfam11084 DUF2621 Protein of u 21.8 46 0.0012 12.6 4.6 30 123-152 96-130 (141) 105 KOG0506 consensus 21.7 47 0.0012 12.6 3.0 70 573-685 368-438 (622) 106 TIGR02099 TIGR02099 conserved 21.6 47 0.0012 12.6 2.2 47 8-61 3-49 (1362) 107 pfam10758 DUF2586 Protein of u 21.6 44 0.0011 12.7 1.2 18 476-493 210-229 (363) 108 TIGR02915 PEP_resp_reg putativ 21.6 27 0.0007 14.1 0.1 44 440-483 74-142 (451) 109 TIGR03639 cas1_NMENI CRISPR-as 21.4 47 0.0012 12.6 3.4 32 161-193 123-155 (278) 110 TIGR00462 genX lysyl-tRNA synt 21.4 26 0.00065 14.3 -0.1 30 72-101 11-40 (330) 111 pfam02743 Cache_1 Cache domain 21.3 47 0.0012 12.5 2.4 12 55-66 21-32 (81) 112 PRK10418 nikD nickel transport 21.1 48 0.0012 12.5 3.8 35 444-478 22-56 (254) 113 TIGR02042 sir sulfite reductas 21.0 37 0.00095 13.2 0.7 41 275-315 86-129 (583) 114 smart00549 TAFH TAF homology. 20.9 48 0.0012 12.5 2.3 59 208-280 10-68 (92) 115 pfam06860 consensus 20.6 49 0.0012 12.4 1.8 36 143-196 24-59 (170) 116 COG3726 AhpA Uncharacterized m 20.6 6 0.00015 18.5 -3.5 61 70-139 72-134 (214) 117 TIGR02647 DNA conserved hypoth 20.3 50 0.0013 12.4 2.0 37 282-319 14-50 (77) No 1 >COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=0 Score=1670.51 Aligned_cols=791 Identities=51% Similarity=0.833 Sum_probs=740.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCHHHH Q ss_conf 99999999999999999999999999998704698978851247788779990789496666125604641799697888 Q gi|254780752|r 5 IVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVK 84 (817) Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~~l~ 84 (817) ++|++++++.++++++++++++++.++.++.++||+++.|++++|+.+|+||+.||++|++|+.|+|++|++++||++|+ T Consensus 1 ~~r~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~~L~~~~p~~ptrvys~dG~Li~e~g~eRR~~vpi~~iP~~li 80 (797) T COG5009 1 MMKLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVETLKDVEPPVPTRVYSADGKLIAEYGEERRIPVPIDDIPDRLI 80 (797) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCEECCHHHCCHHHH T ss_conf 92069999999999999999999999999731599868861127777438871588558987763243434687789999 Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCH Q ss_conf 54543321461133873799999999998632047886776114799988887708883299999999999999866079 Q gi|254780752|r 85 YAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDK 164 (817) Q Consensus 85 ~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK 164 (817) +||||+||+|||+|+|||++||+||++.|+++ ++..|||||||||||||+||++|||+.|||||++||++||+.||| T Consensus 81 ~AflaaED~~FY~H~GvD~~GI~RAa~~nl~~---~~~~~GaSTITQQvAkNf~Ltsertl~RKikE~~LA~~IE~~lsK 157 (797) T COG5009 81 NAFLAAEDKRFYEHHGVDPIGIFRAAFVNLTN---GGRSQGASTITQQVAKNFFLSSERTLERKIKEALLAIRIEQSLSK 157 (797) T ss_pred HHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCH T ss_conf 99987641351113896899999999999743---771677238999999885028136788899999999999976168 Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999972014267433109999998735423440302712544401576433211111466789988876665420111 Q gi|254780752|r 165 EKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYIS 244 (817) Q Consensus 165 ~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It 244 (817) |||||+|||.||||.++|||.||||.||||+++||||+|||+||||||+||.|||+.||++|++|||+||+||+++|||| T Consensus 158 deILELYLNkIylG~~aYGvaAAAq~YFgKsV~eLtlaE~A~lA~LPKaPs~ynP~~~p~RA~~RRn~VL~rM~e~gyIt 237 (797) T COG5009 158 DEILELYLNKIYLGYRAYGVAAAAQTYFGKSVNELTLAEAAMLAGLPKAPSNYNPLYNPERAKERRNYVLNRMLEEGYIT 237 (797) T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 88999987777506750568899998827775334499999985267896555975588999999999999998738987 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 25688875301112445432223457156799885311001243312573289852488898999999998767654443 Q gi|254780752|r 245 QEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQND 324 (817) Q Consensus 245 ~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~ 324 (817) ++||++|+++|+..+ .........|+||.|+||+|++++||++++|++||+||||||+++|.+|+++++++|.+||++| T Consensus 238 ~~~~~~A~~epl~~~-~~~~~~~~~A~YfaE~VRqe~~~~yge~a~Y~~G~~V~TTld~~~Q~~A~~alr~gL~~yd~rh 316 (797) T COG5009 238 QEQADEAKAEPLVAK-YHGPEIAFSAPYFAEMVRQEMIRRYGEEAAYTGGYSVYTTLDLKLQKAAQKALRNGLLDYDRRH 316 (797) T ss_pred HHHHHHHHCCCCCCC-CCCCCHHCCCHHHHHHHHHHHHHHHCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999852854234-4566221057689999999999983625552488469998588899999999999899999863 Q ss_pred HHHCCHHCCCCH-HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCC Q ss_conf 210000001211-2488778633320133555410476521440267652033443100002444234888966520011 Q gi|254780752|r 325 GFRGPIKRIDLK-KDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKE 403 (817) Q Consensus 325 g~rg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (817) |||||+.+++.. .+|...+...+.+.+.++|..+.++.........++..... ..+..+.++|+.... T Consensus 317 g~Rgp~~~i~~~~~~~~~~~~~~~~l~~~~~~~~AvV~~~~~~~a~i~~~~~~~-----------~~~~~~~m~wa~~~~ 385 (797) T COG5009 317 GYRGPEAHIELSGEDWWDELAISDTLSDVGELLPAVVLSVAKSGAKIGLADGSK-----------VTLSMEAMRWARRLL 385 (797) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCC-----------CCCCHHHHHHHHHHC T ss_conf 767864544655541054665422010366613889998536776698205640-----------134387754454303 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 2233321000013646310123566-515775225553116640656666117872132344433200123356653100 Q gi|254780752|r 404 QTTEETSENRNVLSLGDVIYVEHIN-EGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFK 482 (817) Q Consensus 404 ~~~~~~~~~~~~l~~gd~i~i~~~~-~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~K 482 (817) .... ...+.++.||+||+++.. +.|+|.|+|++|||+|+|||+||+|+|||||++|..|+||||||+.|||||+|| T Consensus 386 ~~~~---~~~~~l~~G~~i~V~~~~~~~~~l~QiP~v~gAlVsmdp~tG~I~AlVGGfsf~~SkFNRATQA~rQPGSsfK 462 (797) T COG5009 386 SDNK---SPEDVLKPGDVIYVRKNGGGGWRLRQIPEVNGALVSLDPKTGAILALVGGFSFAQSKFNRATQALRQPGSSFK 462 (797) T ss_pred CCCC---CCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHH T ss_conf 3556---7333468888899997788862513066555626997079870899863634322244477776417985212 Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCC--EEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCC Q ss_conf 001278874024665445652378803785--266641276544225666666530440225887625972352110135 Q gi|254780752|r 483 PIVYAAALDSGYTPASVIMDAPIEVVSRGK--IWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENF 560 (817) Q Consensus 483 P~vy~~Ale~G~tp~t~~~D~p~~~~~~~~--~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~ 560 (817) ||+|+||||+|+||+|+++|+|+.+.+++. .|+|+||+++|.|+++||.||++|.|+++|++++.+|++.+.+|+++| T Consensus 463 PfvYsAALd~G~T~asvi~DaPi~~~~~~~~~~W~PkNy~gk~~Gp~~lR~gL~qSrNl~aVR~l~~vG~d~~~ey~~rf 542 (797) T COG5009 463 PFVYSAALDKGLTPASVINDAPISFWDGGGGGVWRPKNYGGKFAGPITLRQGLEQSRNLVAVRLLDAVGVDYAAEYIKRF 542 (797) T ss_pred HHHHHHHHHCCCCHHHEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH T ss_conf 78999998649987670137884664699887527788898756733899999970128999999985759999999984 Q ss_pred CCC-CCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 565-5567665634451000037767432201574403544666764102443013358532355666666655455467 Q gi|254780752|r 561 GIY-DKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEII 639 (817) Q Consensus 561 Gi~-~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (817) ||. ++.++.+|+|||++++||+|||+||++|||||..++||+|++|+|++|++|+++++++|..|....+.....+... T Consensus 543 G~~~d~~~~~~smALGs~e~Tplqma~AYaVfaNGG~~VeP~~I~~I~Dr~Gkvif~~~p~~~~~~~~~~~~~~~~~~~~ 622 (797) T COG5009 543 GFYTDELPPVLSMALGSGETTPLQMARAYAVFANGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLA 622 (797) T ss_pred CCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEEECCCHHHHHHCCCCCCCCCCCCCC T ss_conf 97745668541211143354289987667631069807564444536548886675358156544223322355554322 Q ss_pred CCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCC-EEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCC Q ss_conf 5543535899999999999998734804321059960-467604678970227984569879999982668982789864 Q gi|254780752|r 640 DKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRP-VAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHAT 718 (817) Q Consensus 640 ~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~-iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~ 718 (817) ....||+|+.+||+|++||++||.+|||+++..++++ ||||||||||++|+||+||+|++|++||||||++++||.+++ T Consensus 623 ~~~~qVid~~~ay~itsml~~vv~~GT~~~a~~L~r~DiAGKTGTTNd~kDAWfvGy~P~~Vt~vwvGfD~~rsLG~~~t 702 (797) T COG5009 623 DYAPQVIDPMTAYQITSMLRGVVQRGTAARAGRLGRPDIAGKTGTTNDSKDAWFVGYTPDLVTGVWVGFDHPRSLGRGET 702 (797) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCC T ss_conf 35240268337899999998888603377787439854366777778765526733689826899986689866767777 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 42121799999999997489830067977716998403227758899976089953178999865677776667776445 Q gi|254780752|r 719 GSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGPAETYTVIDEDSNVSSEEI 798 (817) Q Consensus 719 G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~~~e~f~~gt~P~~~~~~~~~~~~~~~~~~ 798 (817) |++.|+|+|.+||+.+|+++|..+|.+|+||+.+.|++.||+++..+|++++.|+|++||.|++++..+.......+.+ T Consensus 703 G~~~A~Piw~~fM~~alk~~P~~~f~~P~gi~~~~i~~~TG~~~~~g~~~~~~e~f~~gt~p~~~~~~~~~~~~~~~~~- 781 (797) T COG5009 703 GGKLALPIWIDFMKVALKGKPEKDFVPPPGIVSINIDRKTGLLANEGAPKTIIEYFIPGTQPTETESVEGQRGFEIPDD- 781 (797) T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC- T ss_conf 8775664699999999738986666799974388764556612689997651443057999875313356667778765- Q ss_pred CCCCCCCCCCCCCCCCCCC Q ss_conf 6788877888889998879 Q gi|254780752|r 799 LRRSPQANQAINSGSGGLY 817 (817) Q Consensus 799 ~~~~p~~~~~~~~~~gg~~ 817 (817) ..|+. .+...+..+|| T Consensus 782 --~~p~~-~~~~~~~~~lf 797 (797) T COG5009 782 --DVPNA-NASNGQILELF 797 (797) T ss_pred --CCCCC-CCCCCCCCCCC T ss_conf --56554-56777666779 No 2 >PRK11636 mrcA peptidoglycan synthetase; Provisional Probab=100.00 E-value=0 Score=1603.64 Aligned_cols=767 Identities=34% Similarity=0.607 Sum_probs=662.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCHHHHH Q ss_conf 99999999999999999999999999987046989788512477887799907894966661256046417996978885 Q gi|254780752|r 6 VSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVKY 85 (817) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~~l~~ 85 (817) |||+++|+++++++++++++++.++++++.++||+++.|++++++.+|+|||+||++|++|+.|||++|++++||++|++ T Consensus 1 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~Iy~~dG~li~~~~~e~R~~V~~~~IP~~l~~ 80 (850) T PRK11636 1 MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQVYSADGELIAQYGEKRRIPVTLDQIPPEMVK 80 (850) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEECCCCCHHHHHHCCCEEECHHHCCHHHHH T ss_conf 91599999999999999999999999987169979578625588887389917997966744236469337988989873 Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH Q ss_conf 45433214611338737999999999986320478867761147999888877088832999999999999998660799 Q gi|254780752|r 86 AFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKE 165 (817) Q Consensus 86 A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~ 165 (817) ||||+||+|||+|+|||++||+||++.|++ +|+..|||||||||||||+||++|||+.||++|+++|++||++|||| T Consensus 81 A~vA~ED~rFy~H~GvD~~gi~RA~~~nl~---~g~~~qGgSTITQQlaKn~~l~~e~t~~RKikE~~lA~~lE~~~sK~ 157 (850) T PRK11636 81 AFIATEDSRFYEHHGVDPVGIFRAASVALF---SGHASQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLTKD 157 (850) T ss_pred HEEHHHHCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHH T ss_conf 332074176234789899999999999985---59978770289999998863587665899999999999999865999 Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 99999720142674331099999987354234403027125444015764332111114667899888766654201112 Q gi|254780752|r 166 KILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQ 245 (817) Q Consensus 166 eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~ 245 (817) ||||+|||+||||+|+|||+|||++||||+++||||+|||+||||||+|+.|||++||+++++|||+||++|+++||||+ T Consensus 158 eILe~YLN~iyfG~~ayGV~aAA~~YFgK~~~eLtl~EaA~LAgl~qaPs~y~P~~npe~a~~Rrn~VL~~M~~~G~It~ 237 (850) T PRK11636 158 EILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLSEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDEGYITQ 237 (850) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 99999854536789628899999998688801099999999984467987789666989999999999999998699889 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 56888753011124454322234571567998853110012433125732898524888989999999987676544432 Q gi|254780752|r 246 EQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDG 325 (817) Q Consensus 246 ~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g 325 (817) +||++|+++||..+.+.. .....+|||+|+||++|.++||++ +|++||+||||||+++|++|++++++++..||+||| T Consensus 238 ~e~~~A~~~pi~~~~~~~-~~~~~apy~~e~Vr~~l~~~~g~~-~y~~Gl~IyTTld~~lQ~~Ae~av~~~l~~~d~r~g 315 (850) T PRK11636 238 AQYDQARSEAIVANYHAP-EIAFSAPYLSEMVRQEMYNRYGES-AYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHG 315 (850) T ss_pred HHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCHH-HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999718764466676-555677089999999999873433-305885588844889999999999974777766514 Q ss_pred HHCCHHCCCCHH--HHH--HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCC Q ss_conf 100000012112--488--7786333201335554104765214402676520334431000024442348889665200 Q gi|254780752|r 326 FRGPIKRIDLKK--DWG--NTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYN 401 (817) Q Consensus 326 ~rg~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (817) ||+|...+.... .|. ........+........+.+.+........ .........+..+.++|++. T Consensus 316 yrg~~~~l~~~~~~~~~~~~i~~~~~~~~~~g~~~~~vv~~~~~~~~~~-----------~~~~g~~~~l~~~~~~~a~~ 384 (850) T PRK11636 316 YRGPANVLWKVGESAWDNKKITDTLKALPTYGPLLPAVVTSANPQEATA-----------MLADGSSVALSMEGVRWARP 384 (850) T ss_pred CCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHE-----------ECCCCCEEEEEHHHHHHHHH T ss_conf 4452122112332035578999987505433555303787406112210-----------10478534630555565542 Q ss_pred CC---CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 11---223332100001364631012356651577522555311664065666611787213234443320012335665 Q gi|254780752|r 402 KE---QTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPG 478 (817) Q Consensus 402 ~~---~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpG 478 (817) .. ..........+.+..|+.++++..++.+.|.|+|++|+|+|+|||+||+|+|||||+||..++||||+|+.|||| T Consensus 385 ~~~~~~~g~~~~~~~~~l~~g~~v~v~~~~~~~~l~q~P~vq~AlV~iDp~tG~V~A~vGG~d~~~s~fNrA~qa~RQpG 464 (850) T PRK11636 385 YRSDTQQGPTPRKVTDVVQTGQQIWVRQVDDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVG 464 (850) T ss_pred HCCCHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCC T ss_conf 02401025550037887345656888624766310257332121798606778346751675642113225443444788 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCEEEEEC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEE Q ss_conf 3100001278874024665445652378803--78526664127654422566666653044022588762597235211 Q gi|254780752|r 479 SCFKPIVYAAALDSGYTPASVIMDAPIEVVS--RGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADY 556 (817) Q Consensus 479 St~KP~vy~~Ale~G~tp~t~~~D~p~~~~~--~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~ 556 (817) |+||||+|++|||+|++|+|+++|.|+.+.. .+..|+|+||+++|+|+++||+||++|+|+++|++++++|++.+.++ T Consensus 465 StfKPfvYaaAle~G~t~~t~v~D~Pi~~~~~~~g~~w~P~N~~~~~~G~vtlr~AL~~S~N~~aVrl~~~vG~~~~~~~ 544 (850) T PRK11636 465 SNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWRPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEY 544 (850) T ss_pred CCHHHHHHHHHHHCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHH T ss_conf 65178999999974999644505877123027888866700799883886999999984847999999998696999999 Q ss_pred ECCCCCCCC-CCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCC-CCCCCCCCCCCC-- Q ss_conf 013556555-6766563445100003776743220157440354466676410244301335853-235566666665-- Q gi|254780752|r 557 AENFGIYDK-MLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQR-ICDDCNYDTWNG-- 632 (817) Q Consensus 557 ~~~~Gi~~~-~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~-~~~~~~~~~~~~-- 632 (817) +++|||..+ ..+.+|++||+.++||||||+||++|||+|++++|++|+||+|++|++||+++|+ .|..|....... T Consensus 545 ~~~~Gi~~~~~~~~~slaLGs~~vtplema~AYatfAN~G~~~~P~~I~kI~D~~G~vi~~~~p~~~~~~~~~pv~~~~~ 624 (850) T PRK11636 545 LQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPYFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT 624 (850) T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCC T ss_conf 99849985566766320257677679999999999973986616689999987999788743664345433433213444 Q ss_pred ----------------------CCCCC---------------CCCCCCEECCHHHHHHHHHHHHHHHH-----CCCEEHH Q ss_conf ----------------------54554---------------67554353589999999999999873-----4804321 Q gi|254780752|r 633 ----------------------QDEPE---------------IIDKREQVLDPMTAYQITSMLEGVIK-----HGTATGK 670 (817) Q Consensus 633 ----------------------~~~~~---------------~~~~~~~v~s~~~a~~~~~~L~~vv~-----~GTg~~a 670 (817) ...|. ...-..+|+++.+||+|++||++||. .|||+++ T Consensus 625 ~~~~~~~~~~~~~v~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~vi~~~~a~lm~~~l~~~v~~~~g~~GTg~~a 704 (850) T PRK11636 625 QKSNVLENNNVEDVAISQEQQNSSVPMPQLEQANQALVAQNGAQEYAPHVINTPLAFLIKSALNTNIFGEPGWMGTGWRA 704 (850) T ss_pred CCHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 10011011012332201223334566302321120122102221134201236889999999862013565567608887 Q ss_pred C--CCCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCC--------------CCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 0--5996046760467897022798456987999998266898--------------27898644212179999999999 Q gi|254780752|r 671 V--RLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPA--------------PLNNHATGSTLTAPIFNAFMKEA 734 (817) Q Consensus 671 ~--~~~~~iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~--------------~~~~~~~G~~~a~piw~~~m~~~ 734 (817) . ..++|+||||||||+++|+||+||||+||++||||||++. +++...+|++.|+|||.+||+.+ T Consensus 705 ~~~l~~~~~AGKTGTTn~~~DaWFvGytp~~~~~VWvG~Dd~~~~lg~~~~~g~~~~~~~~~~~g~~~a~piW~~~M~~a 784 (850) T PRK11636 705 GRDLKRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGRTTASGAIKDQISGYEGGAKSAQPAWDAYMKAV 784 (850) T ss_pred HHCCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 75047996525777679971279962579958999970158866456544455555555565543366799999999999 Q ss_pred HCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 74898300679777169984032277588999760899531789998656777766 Q gi|254780752|r 735 LKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGPAETYTVIDED 790 (817) Q Consensus 735 ~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~~~e~f~~gt~P~~~~~~~~~~ 790 (817) |+++|..+|++|+||+.++||+.||+||+++| ++.|||++||+||++|+.+... T Consensus 785 ~~~~~~~~f~~P~gi~~~~I~~~sG~la~~~~--~~~e~F~~Gt~Pt~~~~~~~~~ 838 (850) T PRK11636 785 LEGVPEQPLTPPPGIVTVNIDRSTGQLANGGN--SREEYFIEGTQPTQQAVHEVGT 838 (850) T ss_pred HCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC--CEEEEECCCCCCCCCCCCCCCC T ss_conf 72699788999998179998766588899999--5476524899987350336785 No 3 >TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic. Probab=100.00 E-value=0 Score=1462.92 Aligned_cols=637 Identities=42% Similarity=0.669 Sum_probs=553.3 Q ss_pred CEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC---CCCCHH Q ss_conf 60464179969788854543321461133873799999999998632047886776114799988887708---883299 Q gi|254780752|r 70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLT---SNQTMD 146 (817) Q Consensus 70 ~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~---~e~t~~ 146 (817) +|.+|++++||++|++||||+||+|||+|+|||++||+||++.|++...||+..|||||||||||||+||+ +||||. T Consensus 1 ~R~~V~~~~~P~~L~~A~~a~ED~rFy~H~GiD~~gI~RA~~~n~~~~~Hg~~~~GgSTITQQLaKn~yL~~~~~ert~~ 80 (700) T TIGR02074 1 RREYVSIDDIPENLINAFIAIEDRRFYDHFGIDLKGIGRAAVNNLTSGLHGGVLEGGSTITQQLAKNLYLTNSESERTIT 80 (700) T ss_pred CCEECCHHHCCHHHHHHEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 96005566448256745010114565001665588999999999873037874464126899999998504676613688 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHH Q ss_conf 99999999999986607999999972014267433109999998735423440302712544401576433211111466 Q gi|254780752|r 147 RKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAA 226 (817) Q Consensus 147 RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a 226 (817) ||+||++||++||++|||+||||+|||+||||+|+|||++|||.||||+++||||+||||||||||+|+.|||+.||++| T Consensus 81 RK~~E~~LA~~lE~~~sK~~ILE~YLN~iYfG~G~YG~~~AA~~YFgK~v~~Ltl~EaA~LAGlpkaPs~Y~P~~~~e~A 160 (700) T TIGR02074 81 RKIQEALLALKLEQKLSKDEILELYLNQIYFGNGAYGVEAAAQVYFGKSVNDLTLAEAALLAGLPKAPSAYNPFVNPERA 160 (700) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 89999999999853059579997630242116884158899976069776527888999999861375202762216899 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHCCCHH------HHCCC Q ss_conf 789988876665420111256888753011124454322-------23457156799885311001243------31257 Q gi|254780752|r 227 IARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRS-------HLFGSEYFAEEVRRQLIDRYGEK------ALYED 293 (817) Q Consensus 227 ~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~-------~~~~a~yf~e~V~~~l~~~~ge~------~l~~~ 293 (817) ++|||+||.+|+++||||++|+++|+++|+......... ....+|||.|+|++||.+++|.. .+|++ T Consensus 161 ~~Rr~~VL~~M~~~G~It~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~yf~d~V~~e~~~~~g~~~~~~~~~l~~~ 240 (700) T TIGR02074 161 KARRNLVLSRMVEEGYITAEEAEEAINEPIQNYLQDKKEDKSAIYASEYKYPYFVDYVIQELEKEYGLTENDLLQELYQG 240 (700) T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 99999999999865897899999997424653101455323456655413603899999999874288577899999638 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEE Q ss_conf 32898524888989999999987676544432100000012112488778633320133555410476521440267652 Q gi|254780752|r 294 GLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIR 373 (817) Q Consensus 294 Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 373 (817) ||+||||||+++|++||+++++++....++.+.+.+...+. ..++.+ ......+...-......+...... ..... T Consensus 241 Gl~iyTtlD~~~Q~~Ae~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~- 316 (700) T TIGR02074 241 GLKIYTTLDLDMQKAAEKVLREGLREAGKQAGVRKSSESII-LEELYE-EKELLSLLSGLKTLLAKVRKVKKD-AKKER- 316 (700) T ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHH-HHHHHHHHHCCCEEEEECCCHHHC-CCHHC- T ss_conf 98999944868999999999721022354201477611222-123223-888755541451013311001100-11100- Q ss_pred CCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCC Q ss_conf 03344310000244423488896652001122333210000136463101235665157752255531166406566661 Q gi|254780752|r 374 PTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRI 453 (817) Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~I 453 (817) ....+ ... ...+..-.+.|.. ....+.. + ++.| +|.|+..... .+.+++++|+|+|+|||+||+| T Consensus 317 ----~~i~L-i~g-~~~~~~~~~~~~~-----~~~NK~~-~-~~~g-vi~v~~~~~~-~~~~~~~~q~A~V~~D~~TG~v 381 (700) T TIGR02074 317 ----VVIDL-IDG-KAKIEIVDLLKAA-----KKDNKSV-D-LKKG-VIVVKNKLGR-ALIAIPDLQAALVAIDPKTGAV 381 (700) T ss_pred ----CCCCC-CCC-CEEHHHHHHHHHH-----HHHCCEE-E-ECCC-EEEEEECCCC-HHHHCCCCCEEEEEEECCCCEE T ss_conf ----01247-541-1002335556778-----7617804-4-2144-7998306870-2320533250068984589768 Q ss_pred EEEEECCCCCC---CCCCCCCCCCCCCCCCCHHH-HHHHHHHCC--CCCCCCCCCCEEEEEC---CCCEEEEEECCCCCC Q ss_conf 17872132344---43320012335665310000-127887402--4665445652378803---785266641276544 Q gi|254780752|r 454 LATIGGFSYSQ---SEFNRSTQAMRQPGSCFKPI-VYAAALDSG--YTPASVIMDAPIEVVS---RGKIWKPENYSKNFS 524 (817) Q Consensus 454 lA~vGg~d~~~---~~~NrA~~~~rqpGSt~KP~-vy~~Ale~G--~tp~t~~~D~p~~~~~---~~~~~~p~N~~~~~~ 524 (817) +|||||+||.. ++||||||++|||||||||| ||++|||.| ++|++++.|+|..|.. .|..|+|+||+++|. T Consensus 382 ~A~VGG~dy~~~v~~~fNRAT~a~RQPGStfKPf~VY~~Ale~G~~~~~~~~~~D~P~~~~~~~~~G~~w~P~Ny~g~y~ 461 (700) T TIGR02074 382 RALVGGRDYGENVSSQFNRATQAKRQPGSTFKPFAVYAAALEKGLKYTPASILDDEPITYSGDPGNGGGWEPKNYGGKYR 461 (700) T ss_pred EEEECCEECCCCCCCCCCHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCEECCCCCEE T ss_conf 99874612377764464201000268651265799999999850434701033303345358889889503000688146 Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHCC-CCEEEEEECCCCCCCC-CC-----CCCCCCCCCCE----EHHHHHHHHHHHCCC Q ss_conf 2256666665304402258876259-7235211013556555-67-----66563445100----003776743220157 Q gi|254780752|r 525 GASTLRFGLEKSRNLMTVRLAHNMG-MTVVADYAENFGIYDK-ML-----PVLPMSLGAGE----TTVLRMVSAYAVFAN 593 (817) Q Consensus 525 G~itl~~Al~~S~N~~~v~l~~~~G-~~~~~~~~~~~Gi~~~-~~-----~~~s~alG~~~----vtpl~la~aya~~AN 593 (817) |.|||++||++|+|+|||+|+++|| ++.+.+++++|||+.+ .+ +.+|+|||+.+ |||||||+||++||| T Consensus 462 G~vtl~~ALa~S~N~pAv~l~~~vG~~~~~~~~~~~~Gi~~~~~~E~T~~~~~s~ALG~~e~~~Gv~pl~~A~AYa~FaN 541 (700) T TIGR02074 462 GNVTLRQALAQSINIPAVKLLDEVGFLDKVVALAKRFGITSPELPEKTLDPVLSLALGTVESRKGVSPLEMASAYAVFAN 541 (700) T ss_pred ECCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHC T ss_conf 13329999751223899999987078279999999708878766665888756501066543447568999987677641 Q ss_pred CCEEEEEEEEEEEEEC-CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHC Q ss_conf 4403544666764102-44301335853-235566666665545546755435358999999999999987348043210 Q gi|254780752|r 594 GGKQIRPSFIDRIQNR-YGKTIFNQEQR-ICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKV 671 (817) Q Consensus 594 ~G~~~~P~~i~kI~d~-~G~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~ 671 (817) +|.+++||+|+||+|+ +|++|+++... +. ..-...+.++||+||.+|++|++||++||+ |||++|. T Consensus 542 ~G~~~eP~~I~~I~~~r~G~~~~~~~~~~~~-----------a~~~~~~~~~~v~~~~~a~~m~~ml~~vv~-GTG~~A~ 609 (700) T TIGR02074 542 GGKYVEPHFIRKIVDRRDGKVLYENERDDVL-----------AKLKAKPETTQVISPATAYIMTDMLKSVVE-GTGRSAR 609 (700) T ss_pred CCEEECCEEEEEEEECCCCCEEEECCCCCEE-----------EEEECCCCCCEECCHHHHHHHHHHHHHHHH-HHHHHHH T ss_conf 7800246379999864788363404777416-----------653068876211288889999998878756-6778777 Q ss_pred ----CCCCCEEEEECCCCC-------------CCCEEEEEECCCEEEEEEEECCCCC-----CCCCC---CCCCCCCHHH Q ss_conf ----599604676046789-------------7022798456987999998266898-----27898---6442121799 Q gi|254780752|r 672 ----RLNRPVAGKTGTTSS-------------YRDTWFIGYTPTLVVGVYVGYDIPA-----PLNNH---ATGSTLTAPI 726 (817) Q Consensus 672 ----~~~~~iaGKTGTt~~-------------~~D~WfvG~tp~~~~~vWvG~D~~~-----~~~~~---~~G~~~a~pi 726 (817) ..++|+||||||||+ ++|+|||||||+||++||||||+++ +++.+ .+|+..|+|| T Consensus 610 ~Y~~~~~~~~AGKTGTT~~p~e~~~~y~~pSa~~D~WFvGyTP~~v~aVW~G~D~~~~E~~~~~~~~a~~~~G~~~aa~~ 689 (700) T TIGR02074 610 EYDKLPGRPVAGKTGTTNNPEEETSKYIKPSAARDAWFVGYTPYYVTAVWVGYDDKKKEYKLTLGKGALEVTGGGLAAPI 689 (700) T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCEEEEEEEEECCCCCCEEECCCCCEEEECCCCCCHHH T ss_conf 53430686322454889887133103436765547513501677589999740489743110466503651565310789 Q ss_pred HHHHHHHHHCC Q ss_conf 99999999748 Q gi|254780752|r 727 FNAFMKEALKN 737 (817) Q Consensus 727 w~~~m~~~~~~ 737 (817) |++||+.++++ T Consensus 690 w~~fM~~a~~~ 700 (700) T TIGR02074 690 WRDFMAEALKN 700 (700) T ss_pred HHHHHHHHCCC T ss_conf 99999996059 No 4 >PRK09506 mrcB penicillin-binding protein 1b; Reviewed Probab=100.00 E-value=0 Score=1300.41 Aligned_cols=575 Identities=29% Similarity=0.473 Sum_probs=523.5 Q ss_pred CCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH Q ss_conf 25604641799697888545433214611338737999999999986320478867761147999888877088832999 Q gi|254780752|r 68 RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDR 147 (817) Q Consensus 68 ~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~R 147 (817) .|+|++|++++||++|++||||+||+|||+|+|||++||+||++.|++ +|+.+|||||||||||||+||++|||+.| T Consensus 208 ~EdR~~V~ld~vP~~Li~AllA~EDrrFY~H~GVD~~gI~RA~~~Nl~---~G~~vQGGSTITQQLvKNlfLs~ErTl~R 284 (839) T PRK09506 208 GEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLT---AGRTVQGASTLTQQLVKNLFLSSERSYWR 284 (839) T ss_pred CCCEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHCCCCCCCHHH T ss_conf 872478435989999986778786345234788499999999999986---49946770489999999863487666999 Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCC----CCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCH Q ss_conf 9999999999986607999999972014267433----109999998735423440302712544401576433211111 Q gi|254780752|r 148 KIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNS----YGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKN 223 (817) Q Consensus 148 K~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~----yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np 223 (817) |++|+++|++||++||||||||+|||+||||++. |||++||++||||+++|||++|||+||||+|+||.|||++|| T Consensus 285 KikEa~lAl~LE~~ySKdEILE~YLN~IY~Gq~g~~~iyGi~aAAq~YFgK~~~eLtl~EaAlLaGl~k~PS~YnP~rnp 364 (839) T PRK09506 285 KANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNP 364 (839) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 99999999999876599999999730134478977740639999998869991779999999995016796656987798 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCH Q ss_conf 46678998887666542011125688875301112445432223457156799885311001243312573289852488 Q gi|254780752|r 224 KAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDP 303 (817) Q Consensus 224 ~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I~TTiD~ 303 (817) +++++|||+||++|+++|+||++||+.+.++|+....+ .......|||+++|+++|.++++++.+..+||+||||||+ T Consensus 365 e~A~~RRn~VL~~M~e~g~It~~ey~~a~~~pL~v~p~--~~~~~~~P~f~~~V~~eL~~~~g~~~~~~~GLkI~TTLDp 442 (839) T PRK09506 365 KLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPR--GGVISPQPAFMQMVRQELQAKLGDKVKDLSGVKIFTTFDS 442 (839) T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCEEEECCCH T ss_conf 99999999999999986999999999985377633446--6656656689999999999860503430577069963899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEE Q ss_conf 89899999999876765444321000000121124887786333201335554104765214402676520334431000 Q gi|254780752|r 304 QLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVT 383 (817) Q Consensus 304 ~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (817) .+|++||+++.+++..+.+.. T Consensus 443 ~~Q~~AE~av~~~l~~l~~~~----------------------------------------------------------- 463 (839) T PRK09506 443 VAQDAAEKAVVEGIPALKKQR----------------------------------------------------------- 463 (839) T ss_pred HHHHHHHHHHHHHHHHHHHHC----------------------------------------------------------- T ss_conf 999999999998678876422----------------------------------------------------------- Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCC Q ss_conf 02444234888966520011223332100001364631012356651577522555311664065666611787213234 Q gi|254780752|r 384 TERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYS 463 (817) Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~ 463 (817) ....+|+|+|+|||+||+|+|||||+|+. T Consensus 464 ---------------------------------------------------~~~~lq~A~VviD~~TG~V~AmVGG~d~~ 492 (839) T PRK09506 464 ---------------------------------------------------KLSDLETAMVVVDRFSGEVRAMVGGSEPQ 492 (839) T ss_pred ---------------------------------------------------CCCCCEEEEEEEECCCCEEEEEECCCCCC T ss_conf ---------------------------------------------------77664057999978998599997488877 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCEEEEEC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCHH Q ss_conf 44332001233566531000012788740--24665445652378803-7852666412765442256666665304402 Q gi|254780752|r 464 QSEFNRSTQAMRQPGSCFKPIVYAAALDS--GYTPASVIMDAPIEVVS-RGKIWKPENYSKNFSGASTLRFGLEKSRNLM 540 (817) Q Consensus 464 ~~~~NrA~~~~rqpGSt~KP~vy~~Ale~--G~tp~t~~~D~p~~~~~-~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~ 540 (817) .++||||++++|||||+||||+|++||++ +++++|.+.|.|+.+.. .|..|+|+||+++|+|.|+|++||++|+|++ T Consensus 493 ~sgfNRA~~A~RQ~GSt~KPfvY~aAL~~~~~~~~~T~l~D~Pi~~~~~~G~~W~P~Nyd~~~~G~VtLr~ALa~S~N~p 572 (839) T PRK09506 493 FAGYNRAMQARRSIGSLAKPATYLTALSQPDKYRLNTWIADAPISLRQPNGQVWSPQNDDRRYSGRVMLVDALTRSMNVP 572 (839) T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH T ss_conf 66761345467799765118999999866799777645245354864689874388648998657121999998583899 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCC Q ss_conf 258876259723521101355655-5676656344510000377674322015744035446667641024430133585 Q gi|254780752|r 541 TVRLAHNMGMTVVADYAENFGIYD-KMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQ 619 (817) Q Consensus 541 ~v~l~~~~G~~~~~~~~~~~Gi~~-~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~ 619 (817) +|+|++++|++++.+++++|||.. ...+.+|++||+.++||+|||+||++|||+|.+++|++|++|+|.+|++||++.+ T Consensus 573 aVrL~~~vGl~~v~~~~~~lGi~~~~~~~~pSlaLGa~evSplemA~AYatfAN~G~~~~p~~I~~V~d~~G~vl~~~~p 652 (839) T PRK09506 573 TVNLGMALGLPAVTDTWIKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFP 652 (839) T ss_pred HHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCEECCCEEEEEEECCCCCEEEECCC T ss_conf 99999987989999999986998666888867310778888999999999997598773888999999899998830699 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHC--CCCCCEEEEECCCCCCCCEEEEEECC Q ss_conf 3235566666665545546755435358999999999999987348043210--59960467604678970227984569 Q gi|254780752|r 620 RICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKV--RLNRPVAGKTGTTSSYRDTWFIGYTP 697 (817) Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~--~~~~~iaGKTGTt~~~~D~WfvG~tp 697 (817) ..+||+++++||+|++||++||++|||+++. ..++++|||||||||++|+||||||| T Consensus 653 ---------------------~~~rvis~~~A~l~~~~L~~Vv~~GTgr~l~~~~p~~~vAGKTGTTnd~rDaWFvG~T~ 711 (839) T PRK09506 653 ---------------------QAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDG 711 (839) T ss_pred ---------------------CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEECCCCCCCEEEEEEEECC T ss_conf ---------------------86503799999999999999865255244662489985147888879982169985369 Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEECCC Q ss_conf 87999998266898278986442121799999999997489830067977716998403227758899976089953178 Q gi|254780752|r 698 TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPG 777 (817) Q Consensus 698 ~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~~~e~f~~g 777 (817) +|+++||||+|||+++ +.+|++.|+|||.+||+.. ...+-...+|++|..+.||...|.+-..+|. -+++=. T Consensus 712 ~~v~~VWvG~DdN~p~--~ltG~sgAl~iw~~~m~~~--~~~~l~~~~p~~i~~~~~~~~~~~~~~~~~~----~~~~~~ 783 (839) T PRK09506 712 SEVTITWVGRDNNQPT--KLYGASGAMTIYQRYLANQ--TPTPLNLTPPEDIADMGVDYDGNFVCSGGMR----VLPVWT 783 (839) T ss_pred CEEEEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCEEEEEEECCCCCCCCCCCC----CCEEEE T ss_conf 9599999825689987--8864132799999999736--9977667899983799860689803688720----340352 Q ss_pred CCCCCCCCC Q ss_conf 999865677 Q gi|254780752|r 778 TGPAETYTV 786 (817) Q Consensus 778 t~P~~~~~~ 786 (817) +.|...|.. T Consensus 784 ~~~~~~~~~ 792 (839) T PRK09506 784 SDPQSLCQQ 792 (839) T ss_pred CCCHHHHHH T ss_conf 382566554 No 5 >COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=0 Score=1165.75 Aligned_cols=562 Identities=41% Similarity=0.670 Sum_probs=513.7 Q ss_pred CCHHHHHCCCCCCCEEEECCCCCEEEEEEC--CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 897885124778877999078949666612--560464179969788854543321461133873799999999998632 Q gi|254780752|r 39 PDYAALNSYSPAVTTRIHAGNGALMAEYAR--ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRN 116 (817) Q Consensus 39 P~~~~l~~~~~~~~t~iyd~dG~~i~~~~~--~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~ 116 (817) +....+.....+.++.+||++|+.+..... ++|.+|++|+||++|++||||+||+|||+|+||||.||+||++.++. T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~V~~~~ip~~l~~Avia~ED~~Fy~H~Gid~~~i~~aa~~~~~- 120 (661) T COG0744 42 PILLDLLVPQTPKSTTIYDRDGKLILTLYSGEEHREWVPLDQIPPNLKQALIAIEDRRFYEHHGIDPKGIGRAALANNL- 120 (661) T ss_pred CCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCEEECHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH- T ss_conf 4311112357876458997178413024566666515327988889986774114564246788398899999999875- Q ss_pred CCCC-CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC Q ss_conf 0478-867761147999888877088832999999999999998660799999997201426743310999999873542 Q gi|254780752|r 117 ISHG-RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKS 195 (817) Q Consensus 117 ~~~g-~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~ 195 (817) +| +..|||||||||||||+||++++|+.||++|+++|++||+.||||||||+|||.||||+|+|||++||++||||+ T Consensus 121 --~g~~~~qGgSTITQQl~KN~fL~~~~t~~RK~~E~~lA~~LE~~~sKdeILe~YLN~vy~G~g~~Gv~aAA~~yFgk~ 198 (661) T COG0744 121 --SGGGVSQGGSTITQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFGRGAYGVEAAAQYYFGKP 198 (661) T ss_pred --CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC T ss_conf --478767862609999998874177863889999999999986332899999998534104788078999999981999 Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 34403027125444015764332111114667899888766654201112568887530111244543222345715679 Q gi|254780752|r 196 VSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAE 275 (817) Q Consensus 196 ~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e 275 (817) ++|||++|+|+||||+|+|+.|||+++++.+++|||.||.+|+++|+||++|+++|+++|+... ..........+||.+ T Consensus 199 a~~Ltl~qaA~Lag~~~~Ps~y~p~~~~~~a~~R~~~VL~~M~~~g~It~~~~~~A~~~~l~~~-~~~~~~~~~~~~~~~ 277 (661) T COG0744 199 AKDLTLAQAALLAGLLKAPSLYNPYRPPEYARARRNLVLRRMVEQGYITAEEYDAALAEPLQVQ-QAKTVATSPPPYFDD 277 (661) T ss_pred HHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHH T ss_conf 5887999999982505691003887881789999999999999849999999999854577655-343221346348999 Q ss_pred HHHHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 98853110012433125732898524888989999999987676544432100000012112488778633320133555 Q gi|254780752|r 276 EVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEW 355 (817) Q Consensus 276 ~V~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (817) .|+++|.+.+|+..+.++||+||||||+++|++||++++ . .+.. T Consensus 278 ~v~~el~~~~g~~~l~~~gl~I~TTlD~~~Q~~ae~~v~-~--~~~~--------------------------------- 321 (661) T COG0744 278 VVRQELAELLGESDLLTGGLKVYTTLDPELQEAAEKAVQ-A--DPLY--------------------------------- 321 (661) T ss_pred HHHHHHHHHCCCCHHHCCCEEEEECCCHHHHHHHHHHHH-H--CCCC--------------------------------- T ss_conf 999999986383222049858995779999999999986-3--0467--------------------------------- Q ss_pred CCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 41047652144026765203344310000244423488896652001122333210000136463101235665157752 Q gi|254780752|r 356 DIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQ 435 (817) Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~ 435 (817) . T Consensus 322 -------------------------------------------------------------------------------~ 322 (661) T COG0744 322 -------------------------------------------------------------------------------K 322 (661) T ss_pred -------------------------------------------------------------------------------C T ss_conf -------------------------------------------------------------------------------7 Q ss_pred CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEE Q ss_conf 2555311664065666611787213234443320012335665310000127887402-466544565237880378526 Q gi|254780752|r 436 IPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIW 514 (817) Q Consensus 436 ~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~ 514 (817) ...+|+|+|+||++||+|+|||||.|+..++||||+|+.||||||||||+|.+|+++| ++|++++.|.|+++. .| T Consensus 323 ~~~~q~a~v~~d~~tG~V~A~VGg~d~~~~~fNrAt~a~Rq~GSt~KP~~~~~a~~~~~~~~~~~~~d~p~~~~----~~ 398 (661) T COG0744 323 LRDVQAALVLIDPKTGAVRALVGGRDYQPSGFNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDAPVTYG----NW 398 (661) T ss_pred CCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCEECC----CC T ss_conf 76503679999668985899976888986653300003678852588999999997389997744526872237----88 Q ss_pred EEEECCCCCC-CHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCC Q ss_conf 6641276544-225666666530440225887625972352110135565556766563445100003776743220157 Q gi|254780752|r 515 KPENYSKNFS-GASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFAN 593 (817) Q Consensus 515 ~p~N~~~~~~-G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN 593 (817) +|+||+++|. |.|+|++||++|.|+++|++++++|++++.+++++|||..+..+.++++||+.++||+|||+||++||| T Consensus 399 ~p~N~~~~y~~g~vtl~~ALa~S~Nipav~l~~~vG~~~~~~~~~~lGi~~~~~~~~s~~lg~~~~sp~~ma~aY~~fan 478 (661) T COG0744 399 SPKNYDGRYEGGSVTLREALATSLNIPAVRLLQKVGLDKVVDTAKKLGINSPLVPGPSLALGASEVSPLEMASAYATFAN 478 (661) T ss_pred CCEECCCCCCCCEECHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 87466786568526199998719999999999986748999999982998888886522268888989999998999960 Q ss_pred CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC-CCEEHHCC Q ss_conf 44035446667641024430133585323556666666554554675543535899999999999998734-80432105 Q gi|254780752|r 594 GGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH-GTATGKVR 672 (817) Q Consensus 594 ~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~-GTg~~a~~ 672 (817) +|.+.+||+|+||+|.+| ++|++.+. .+||+|+++|++|++||+.||+. ||+..+.. T Consensus 479 gG~~~~p~~I~ki~~~~G-vl~~~~~~---------------------~~rv~~~~~a~~m~~ml~~vv~~tg~~~~a~~ 536 (661) T COG0744 479 GGTYYPPHFIRKVTDADG-VLYDNPPK---------------------VKRVLSPQAAYLMTDMLQGVVTPTGTGAAAKL 536 (661) T ss_pred CCEECCCEEEEEEECCCC-CEEECCCC---------------------CEEEECHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 983358746899988997-07636998---------------------63630898999999999998765076100256 Q ss_pred CCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 996046760467897022798456987999998266898278986442121799999999997489830067977 Q gi|254780752|r 673 LNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPP 747 (817) Q Consensus 673 ~~~~iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~ 747 (817) .+...+|||||||+++|+|||||||+|+++||+|+|++ ++ ...+|++.++++|++||+.++.+.+..+++.++ T Consensus 537 ~~~~~~GKTGTt~~~~D~WfvG~tp~~~~avW~G~d~~-~~-~~~~g~s~~a~iw~~~m~~a~~~~~~~~~~~~~ 609 (661) T COG0744 537 PGPYAAGKTGTTNDNRDAWFVGYTPQLTTAVWLGNDDN-PL-TPLTGGSDAAAIWKEFMGQALPGGLRVPFPFTD 609 (661) T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCC-CC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 76555665678898764179831587589999845899-87-567677618999999999872268777888877 No 6 >PRK11240 penicillin-binding protein 1C; Provisional Probab=100.00 E-value=0 Score=1156.31 Aligned_cols=562 Identities=28% Similarity=0.384 Sum_probs=495.1 Q ss_pred CCCEEEECCCCCEEEEEEC---CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 8877999078949666612---5604641799697888545433214611338737999999999986320478867761 Q gi|254780752|r 50 AVTTRIHAGNGALMAEYAR---ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGA 126 (817) Q Consensus 50 ~~~t~iyd~dG~~i~~~~~---~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGg 126 (817) +.+++|||+||++|..+.. ++|.+|++|+|||++++|+||+||+|||+|+|||++||+||++.|++ +|+++||| T Consensus 40 ~~a~vv~~~dG~~L~~~~~~dg~wR~~v~ld~v~p~l~~Alla~ED~rFy~H~GVD~~ai~RA~~~nl~---~g~~~~Gg 116 (770) T PRK11240 40 NPARVVVAEDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLT---SGRVISGG 116 (770) T ss_pred CCCEEEECCCCCCHHHEECCCCCEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCC T ss_conf 863799978997831105657876546893889999998899987145134789399999999999985---59815770 Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEE Q ss_conf 14799988887708883299999999999999866079999999720142674331099999987354234403027125 Q gi|254780752|r 127 STITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAY 206 (817) Q Consensus 127 STITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~ 206 (817) ||||||||| ++..++||+.||++|+++|++||++||||||||+|||.||||+|+|||+|||+.||||+++|||++|||+ T Consensus 117 STITqQlaR-ll~~~~Rt~~rKl~E~~~A~~LE~~~SKdeILe~YLN~~pfG~~~~Gv~AAs~~YFgK~~~~LtlaEaAl 195 (770) T PRK11240 117 STLTMQVAR-LLDPHPRTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAYLGKSPANLSYAEAAL 195 (770) T ss_pred CHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHH T ss_conf 489999997-5278877699999999999999986599999999862466787079999999998399927799999999 Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 44401576433211111466789988876665420111256888753011124454322234571567998853110012 Q gi|254780752|r 207 LAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYG 286 (817) Q Consensus 207 LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~g 286 (817) ||||||+|++|||.+||+++++|||.||++|+++|+|+++|+++|.++|+.+..+..+ ..+|||.+.+.++ T Consensus 196 LA~LpqaPs~y~P~~~p~~a~~rR~~VL~rm~~~g~i~~~~~~~a~~epl~~~~~~~p---~~ap~~~~~~~~~------ 266 (770) T PRK11240 196 LAVLPQAPSRLRPDRWPERAEAARNKVLERMAEQGVWPAEQVKESREEPVWLAPRQMP---QLAPLFARMMLGK------ 266 (770) T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHH------ T ss_conf 8341458755685449899999999999999985999999999987464455654550---4679999999740------ Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC Q ss_conf 43312573289852488898999999998767654443210000001211248877863332013355541047652144 Q gi|254780752|r 287 EKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNS 366 (817) Q Consensus 287 e~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 366 (817) ..+.+||||||..||+.+|+++++....+ T Consensus 267 -----~~~~~I~TTlD~~lQ~~~e~~~~~~~~~l---------------------------------------------- 295 (770) T PRK11240 267 -----SKSDKIVTTLDAGLQRRLEDLAQNWKGRL---------------------------------------------- 295 (770) T ss_pred -----CCCCEEEECCCHHHHHHHHHHHHHHHHHC---------------------------------------------- T ss_conf -----57974995759999999999998777516---------------------------------------------- Q ss_pred CEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEE Q ss_conf 02676520334431000024442348889665200112233321000013646310123566515775225553116640 Q gi|254780752|r 367 HITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAM 446 (817) Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~i 446 (817) .+..|+|+|+| T Consensus 296 ---------------------------------------------------------------------~~~~~~A~vvi 306 (770) T PRK11240 296 ---------------------------------------------------------------------PERSSLAMIVV 306 (770) T ss_pred ---------------------------------------------------------------------CCCCCCEEEEE T ss_conf ---------------------------------------------------------------------87556359999 Q ss_pred CCCCCCCEEEEECCCCC-CCCCCCC--CCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCEEEEEECCCC Q ss_conf 65666611787213234-4433200--123356653100001278874024-6654456523788037852666412765 Q gi|254780752|r 447 DPRTGRILATIGGFSYS-QSEFNRS--TQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVVSRGKIWKPENYSKN 522 (817) Q Consensus 447 d~~TG~IlA~vGg~d~~-~~~~NrA--~~~~rqpGSt~KP~vy~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p~N~~~~ 522 (817) |++||+|+|||||.||. .+.||++ +++.||||||||||+|++|||+|+ +|+|++.|.|..|.+ |.|+||+++ T Consensus 307 D~~tg~V~A~VG~~d~~~~~~~g~vd~~~A~RqPGStlKPfvYa~Ale~G~i~p~s~l~D~P~~~g~----y~P~Nfd~~ 382 (770) T PRK11240 307 DHTDMAVRGWVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGD----YRPGNFDSG 382 (770) T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC----CCCCCCCCC T ss_conf 7899808999837666754446763302035689623889999999976999988784168701488----687027887 Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEE Q ss_conf 44225666666530440225887625972352110135565556----76656344510000377674322015744035 Q gi|254780752|r 523 FSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM----LPVLPMSLGAGETTVLRMVSAYAVFANGGKQI 598 (817) Q Consensus 523 ~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~----~~~~s~alG~~~vtpl~la~aya~~AN~G~~~ 598 (817) |+|.|++++||++|+|+|+|++++++|++++.+.++++||...+ .+++|++||+.++||+||++||++|||+|.+. T Consensus 383 ~~G~vt~r~AL~~SlNipAV~ll~~~G~~~~~~~l~~~Gi~~~l~~~~~~~LslaLGg~evtl~eLa~aYa~~An~G~~~ 462 (770) T PRK11240 383 FHGPVSMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLEDMAAAYSAFARHGKAA 462 (770) T ss_pred CCCEEEHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEEC T ss_conf 20611099999865479999999987969999999973997567877789853331576888999999999997798433 Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEE Q ss_conf 44666764102443013358532355666666655455467554353589999999999999873480432105996046 Q gi|254780752|r 599 RPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVA 678 (817) Q Consensus 599 ~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~ia 678 (817) +|.+.. ++. ...++++|+++||+|++||+++++.++.. +...+.++| T Consensus 463 ~~~~~~------~~~--------------------------~~~~~v~s~~aa~~~~~iL~~~~r~~~~~-~l~~~~pvA 509 (770) T PRK11240 463 KLRLQP------DDP--------------------------LLERPLMSPGAAWIIRRIMADEAQPLPDA-ALPRVVPLA 509 (770) T ss_pred CCEECC------CCC--------------------------CCCCCCCCHHHHHHHHHHHHHCCCCCHHH-HCCCCCCCE T ss_conf 517715------886--------------------------33213688888999999987504443011-002377624 Q ss_pred EEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCEEEEECHH Q ss_conf 76046789702279845698799999826689827898644212179999999999748983-00679777169984032 Q gi|254780752|r 679 GKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPS-SRFVAPPGMSLIPINKW 757 (817) Q Consensus 679 GKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~-~~f~~P~~iv~~~i~~~ 757 (817) ||||||+++||+|||||||+||++||||+||++++ .+.+|...|+|||.++|+........ ...+.|++|.++.||.. T Consensus 510 gKTGTS~g~RDaWfvG~tp~ytvgVWvGn~Dg~p~-~~~~G~~~AaPllf~i~~~L~~~~~~~p~~~~P~~v~~~~iC~~ 588 (770) T PRK11240 510 WKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTPV-VGQFGFASAVPLLNQVNNLLLSRGANLPEDPRPASVSRGVICWP 588 (770) T ss_pred ECCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC T ss_conf 43467888733389863598599999868999938-77406023587999999985324467888899987405666458 Q ss_pred HCC-CC--CCCCCCEEEEEECCCCCCCC Q ss_conf 277-58--89997608995317899986 Q gi|254780752|r 758 TGM-LS--KKGDPDTIIEAFKPGTGPAE 782 (817) Q Consensus 758 sG~-la--~~~~~~~~~e~f~~gt~P~~ 782 (817) +|. ++ .+.|+....+||++|+.|.. T Consensus 589 ~G~~~~~~~~~C~~~~~~w~i~g~~p~~ 616 (770) T PRK11240 589 GGQSLPAGDSNCRRRLATWLLDGSQPPT 616 (770) T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCC T ss_conf 8874777899886430145427888973 No 7 >TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall. Probab=100.00 E-value=0 Score=1162.39 Aligned_cols=576 Identities=31% Similarity=0.520 Sum_probs=535.9 Q ss_pred CCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHH--HHHCCCCC Q ss_conf 25604641799697888545433214611338737999999999986320478867-7611479998888--77088832 Q gi|254780752|r 68 RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRP-EGASTITQQVAKN--FLLTSNQT 144 (817) Q Consensus 68 ~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~-qGgSTITQQlaKn--~~l~~e~t 144 (817) .|.|..|++++.|+.|+++++|+|||+||+|+|||+.+|+||++.|++ +|+.+ ||||||||||||| +|||+||| T Consensus 144 ~E~Rl~v~r~~~P~lLvdtLl~~EDR~Fy~HdGi~~~SI~RA~~vNl~---AG~tvrQGGSTLTQQLvKNGlLFLs~eRs 220 (742) T TIGR02071 144 GEQRLFVPRDQFPELLVDTLLATEDRDFYEHDGISLYSIGRAVLVNLT---AGRTVRQGGSTLTQQLVKNGLLFLSNERS 220 (742) T ss_pred CCCEEEECCCCCCHHHEECEEEEECCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEECCCHHHHHHHHHHHCCCCCHHH T ss_conf 543234001048411100115575102455587458799999999874---38826507402689999840002575147 Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCC Q ss_conf 999999999999998660799999997201426743----3109999998735423440302712544401576433211 Q gi|254780752|r 145 MDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN----SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPF 220 (817) Q Consensus 145 ~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~----~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~ 220 (817) +.||+.||++|+-||.+||||.|||.|||.||+|+. +.||+-||++|||+++.||+|.|.|||+||+|+||.|||+ T Consensus 221 l~RK~NEa~MALild~rYsKdrILE~YLNEVYLGQ~G~~~IhGF~LAS~yyFGrpl~EL~ldQ~ALLVGMVKGpS~YnP~ 300 (742) T TIGR02071 221 LWRKINEAYMALILDARYSKDRILELYLNEVYLGQSGDDAIHGFPLASQYYFGRPLAELSLDQVALLVGMVKGPSLYNPW 300 (742) T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 88999999999998513682278887532300076756521330334432237740010077787874211267778735 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-CCC-CCCCHHHHHHHHHHHHHCCCHH-HHCCCCEEE Q ss_conf 1114667899888766654201112568887530111244543-222-3457156799885311001243-312573289 Q gi|254780752|r 221 RKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQR-RSH-LFGSEYFAEEVRRQLIDRYGEK-ALYEDGLSI 297 (817) Q Consensus 221 ~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~-~~~-~~~a~yf~e~V~~~l~~~~ge~-~l~~~Gl~I 297 (817) +||++|++|||.||..|+++++||+++|+.|.+-||....+.. -.. .. |=|.+.|++||.++|+++ -....|+|| T Consensus 301 RnP~~AL~RRNLVL~lL~e~~~i~~~~Y~~l~~RpLgVqk~g~l~~sn~~--PAF~qlV~~eL~~kl~~~k~~~~~G~~i 378 (742) T TIGR02071 301 RNPDRALERRNLVLRLLQEQKIITDEEYQALSARPLGVQKKGGLIISNRY--PAFLQLVRRELRQKLGDKKVKDLSGLRI 378 (742) T ss_pred CCHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCEE T ss_conf 10688875214789999744744778999997277988899866632788--5389999999997637755454578778 Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC Q ss_conf 85248889899999999876765444321000000121124887786333201335554104765214402676520334 Q gi|254780752|r 298 RTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTID 377 (817) Q Consensus 298 ~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 377 (817) .||+|+..|.+||+||.+.+..+.+++|-+ T Consensus 379 FTtlD~~~Q~~aE~av~~~~~~L~~~kG~~-------------------------------------------------- 408 (742) T TIGR02071 379 FTTLDPVSQSAAEQAVKETIPALKKKKGKK-------------------------------------------------- 408 (742) T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHCCCC-------------------------------------------------- T ss_conf 843797899999987876457888750678-------------------------------------------------- Q ss_pred CCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEE Q ss_conf 43100002444234888966520011223332100001364631012356651577522555311664065666611787 Q gi|254780752|r 378 SNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATI 457 (817) Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~v 457 (817) .+++|+|+||+|.+||||+||| T Consensus 409 ----------------------------------------------------------~~~LEaAmvv~D~~~GEvrA~v 430 (742) T TIGR02071 409 ----------------------------------------------------------LKDLEAAMVVVDRFTGEVRALV 430 (742) T ss_pred ----------------------------------------------------------CCCCEEEEEEEECCCCEEEEEE T ss_conf ----------------------------------------------------------8853177889836887078887 Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCEEEEECC-CCEEEEEECCCCCCCHHHHHHHHH Q ss_conf 21323444332001233566531000012788740--246654456523788037-852666412765442256666665 Q gi|254780752|r 458 GGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS--GYTPASVIMDAPIEVVSR-GKIWKPENYSKNFSGASTLRFGLE 534 (817) Q Consensus 458 Gg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~--G~tp~t~~~D~p~~~~~~-~~~~~p~N~~~~~~G~itl~~Al~ 534 (817) ||++-.-+.||||.+|+||.||-.||+||.+||++ .|+++|.+.|.|+.+... |..|+|+|||++|+|.|.|-+||+ T Consensus 431 Gg~~p~f~GFNRAl~A~R~iGSL~KP~vYLtALs~P~~Y~LnTw~~d~P~~ik~~~G~~W~P~N~D~~~~g~V~L~dALa 510 (742) T TIGR02071 431 GGRDPQFAGFNRALQARRQIGSLVKPAVYLTALSQPDKYRLNTWIEDQPLSIKLSNGQVWSPRNYDRRYSGTVMLYDALA 510 (742) T ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEHHHHHH T ss_conf 58788756010364163776432436899997278973114664236644775688872465147742256264678987 Q ss_pred HHCCHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCC Q ss_conf 3044022588762597235211013556555-676656344510000377674322015744035446667641024430 Q gi|254780752|r 535 KSRNLMTVRLAHNMGMTVVADYAENFGIYDK-MLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKT 613 (817) Q Consensus 535 ~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~-~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~v 613 (817) +|+|+|+|+|++++|++++.++..+||+... ++|.+||-||+.+.||.|||+.|.+|||||...+-+.|++|.|.+|++ T Consensus 511 ~S~N~pTV~lGm~vGl~~V~~t~~~LG~~k~~i~~~PsmlLGA~~ltP~evaq~YQtlAsgG~~~pL~avRSVl~~dG~v 590 (742) T TIGR02071 511 RSLNIPTVNLGMKVGLDKVSQTLKKLGINKDEIPPVPSMLLGAISLTPYEVAQLYQTLASGGERAPLSAVRSVLDEDGKV 590 (742) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCE T ss_conf 65317678864631767899999982877120476633552113668789998997762577554310220101147763 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHH--HHHHHHHHHHHHHHCCCEEHHC--CC-CCCEEEEECCCCCCC Q ss_conf 133585323556666666554554675543535899--9999999999987348043210--59-960467604678970 Q gi|254780752|r 614 IFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPM--TAYQITSMLEGVIKHGTATGKV--RL-NRPVAGKTGTTSSYR 688 (817) Q Consensus 614 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~--~a~~~~~~L~~vv~~GTg~~a~--~~-~~~iaGKTGTt~~~~ 688 (817) ||++.+ ..+|+.+.+ .||++...|+.||++|||+... .. ....|||||||||.| T Consensus 591 Ly~~~~---------------------~~~~~~p~~svAaylt~~AMQqvV~~GTaRsL~~~~~~~l~LAGKTGTtNd~R 649 (742) T TIGR02071 591 LYQSLP---------------------QAEQAVPSQSVAAYLTLYAMQQVVQRGTARSLGADFPSSLSLAGKTGTTNDSR 649 (742) T ss_pred EECCCC---------------------CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 301788---------------------74545774203577677787754201201100100466656545636568885 Q ss_pred CEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCCC-CC Q ss_conf 22798456987999998266898278986442121799999999997489830067977716998403227758899-97 Q gi|254780752|r 689 DTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKG-DP 767 (817) Q Consensus 689 D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG~la~~~-~~ 767 (817) |+||+|++.+-++.||+|.|||.+. ..||++.|+.||++||+.. .-..-..+.|+||....|+..++.-.... |+ T Consensus 650 DsWF~G~dG~~~~~~W~GRD~N~~T--kLtGAsGAl~vy~~yL~~~--~P~~L~l~~P~~i~~~~v~~~G~~~~~~~nC~ 725 (742) T TIGR02071 650 DSWFVGIDGKEVTIVWLGRDDNGPT--KLTGASGALQVYKRYLKYQ--TPEPLLLVPPEGIKMFGVDKQGNGGCKADNCP 725 (742) T ss_pred CEEEEEECCCEEEEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC T ss_conf 1047764387899999852789884--7645315899999998525--88742336878833677744777302246899 Q ss_pred CEEEEEECCCCCCC Q ss_conf 60899531789998 Q gi|254780752|r 768 DTIIEAFKPGTGPA 781 (817) Q Consensus 768 ~~~~e~f~~gt~P~ 781 (817) +.+.-+|..+..|. T Consensus 726 ~~r~lP~w~~~~~~ 739 (742) T TIGR02071 726 GARRLPIWTGNEQA 739 (742) T ss_pred CCEEEEEECCCCCC T ss_conf 84484267078766 No 8 >TIGR02073 PBP_1c penicillin-binding protein 1C; InterPro: IPR011815 This entry contains penicillin binding proteins includes the member from Escherichia coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this entry are presumed to have the same basic function.. Probab=100.00 E-value=0 Score=983.03 Aligned_cols=593 Identities=29% Similarity=0.420 Sum_probs=512.4 Q ss_pred CCCEEEECCCCCEEEEEE---CCCEEEECH-HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 887799907894966661---256046417-9969788854543321461133873799999999998632047886776 Q gi|254780752|r 50 AVTTRIHAGNGALMAEYA---RENRLFLPI-QIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEG 125 (817) Q Consensus 50 ~~~t~iyd~dG~~i~~~~---~~~R~~v~~-~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qG 125 (817) +.+++|||+||+++..+- .++|.+++. ++|||.+++|+|..||+|||+|.||||.+|+||+++++. +|+++|| T Consensus 9 p~s~~v~Dr~G~~Lr~~~~~Dg~wRl~~~~~~~isp~~~~~ll~~ED~rFY~H~GVnp~al~Ra~~q~~~---~g~~~SG 85 (786) T TIGR02073 9 PSSTVVLDRHGTLLRALLASDGQWRLPVDLEEDISPKFLEALLLYEDKRFYWHPGVNPLALLRAAWQNLV---SGRRVSG 85 (786) T ss_pred CCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHH---CCCCEEC T ss_conf 8551455036870033412465330478877678989999998651301111388278999999898643---4870005 Q ss_pred CCHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCC Q ss_conf 11479998888770-----8883299999999999999866079999999720142674331099999987354234403 Q gi|254780752|r 126 ASTITQQVAKNFLL-----TSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELT 200 (817) Q Consensus 126 gSTITQQlaKn~~l-----~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLt 200 (817) ||||||||||.+.- -..||+.-|++||+.|++||.+|||+|||++|||.++||++..|+.|||..||||.+++|| T Consensus 86 GSTLTMQlaRl~~~L~~~g~~~Rt~~~Kl~Q~~~A~~LE~~~sK~EIL~~YLn~APyGGnl~G~~aAS~~YFgK~p~~Ls 165 (786) T TIGR02073 86 GSTLTMQLARLLDPLINVGRGSRTLLGKLRQMWRAIQLEARYSKREILEAYLNLAPYGGNLEGLRAASLIYFGKEPSSLS 165 (786) T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 53488899999999983589997778999999999999975193789999983289881427589999998477745678 Q ss_pred CCCEEEEEEECCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 0271254440157643321---1111466789988876665420111256888753011124454322234571567998 Q gi|254780752|r 201 IEEAAYLAALPKGPSNYDP---FRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEV 277 (817) Q Consensus 201 l~EaA~LAgi~~~Ps~y~P---~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V 277 (817) ++|||+||.|||+|+.+.| -++|+.+++-||.||++|.+.++++.+.+..+..+|+.... ......||||++.. T Consensus 166 ~~Eaa~LavLPqaP~~~~~~~~dr~~~~a~~AR~~ll~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~p~~APH~~~~l 242 (786) T TIGR02073 166 LAEAALLAVLPQAPSARRLKTTDRLPKAAKAARDRLLDRMAEQGVADSEQVALAALEPLPAEP---EKLPQLAPHFAQKL 242 (786) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHH T ss_conf 899999999731700226642561489999999999998752387678999999850330133---24676148999999 Q ss_pred HHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 85311001243312573289852488898999999998767654443210000001211248877863332013355541 Q gi|254780752|r 278 RRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDI 357 (817) Q Consensus 278 ~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (817) .++-.+.+ .-+=+|.||||.+||..+|+.+++++..+.++ T Consensus 243 ~~~~~~~~------~~~s~i~sTlD~~LQ~~~E~~~~~~~~~l~~~---------------------------------- 282 (786) T TIGR02073 243 LRARPEIA------SVDSKIVSTLDADLQRRLEELARRYLSALRPR---------------------------------- 282 (786) T ss_pred HHHHHCCC------CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC---------------------------------- T ss_conf 98411006------77873676247447999999999999861868---------------------------------- Q ss_pred EEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 04765214402676520334431000024442348889665200112233321000013646310123566515775225 Q gi|254780752|r 358 AVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIP 437 (817) Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p 437 (817) + T Consensus 283 -------------------------------g------------------------------------------------ 283 (786) T TIGR02073 283 -------------------------------G------------------------------------------------ 283 (786) T ss_pred -------------------------------C------------------------------------------------ T ss_conf -------------------------------8------------------------------------------------ Q ss_pred CCCCEEEEECCCCCCCEEEEECCCCCC-CCCCC--CCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCE Q ss_conf 553116640656666117872132344-43320--012335665310000127887402-46654456523788037852 Q gi|254780752|r 438 KVQGGLIAMDPRTGRILATIGGFSYSQ-SEFNR--STQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKI 513 (817) Q Consensus 438 ~~q~a~V~id~~TG~IlA~vGg~d~~~-~~~Nr--A~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~ 513 (817) ..+.|++|||+.+|+|+|+||+-||.+ +.++. .++|.|+||||+|||+|+.|||+| +.|.|++.|+|..|.++.+. T Consensus 284 i~~~A~lVvD~~s~~V~A~vGS~df~d~~~~gqVD~v~A~RSpGStLKPFlYaLald~G~~~p~slL~D~P~~fg~~SG~ 363 (786) T TIGR02073 284 ISNLAILVVDNRSGAVLAYVGSADFFDDSNAGQVDGVRAIRSPGSTLKPFLYALALDDGLIHPDSLLKDVPLRFGDVSGL 363 (786) T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCCC T ss_conf 30257889971798269998245676613050461476676678643189998565652112010101012101472333 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCC----CC-CCCCCCCCCCCCEEHHHHHHHHH Q ss_conf 66641276544225666666530440225887625972352110135565----55-67665634451000037767432 Q gi|254780752|r 514 WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIY----DK-MLPVLPMSLGAGETTVLRMVSAY 588 (817) Q Consensus 514 ~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~----~~-~~~~~s~alG~~~vtpl~la~ay 588 (817) |.|+||+..|+|+|++++||.+|+|||||++++++|.++++++++++|+. +. ..+.+|++||+.|+|++|||++| T Consensus 364 Y~P~Nf~~~F~G~V~v~~AL~~SLNiPAV~ll~~~g~~~f~~~L~~~G~~~~~~~~~~~yGLSL~LGG~e~tL~dLa~lY 443 (786) T TIGR02073 364 YAPENFDKTFHGPVPVREALARSLNIPAVRLLERLGPPRFASFLRQAGLKLLKPKSRDYYGLSLILGGAEITLQDLANLY 443 (786) T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCHHHHHHHH T ss_conf 26788777646776399986430671489999742926899999970565578000025760131230174489999999 Q ss_pred HHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC-CCE Q ss_conf 2015744035446667641024430133585323556666666554554675543535899999999999998734-804 Q gi|254780752|r 589 AVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH-GTA 667 (817) Q Consensus 589 a~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~-GTg 667 (817) ++|||+|...+|+....-. +... ...-.--.-..+++|+..|+++.+||++.-.. .+. T Consensus 444 ~~LA~~G~~~plr~~~~~~----------~~~~-----------~~~~keGnf~~rll~~~aa~~~~diL~~~~~p~~~~ 502 (786) T TIGR02073 444 AMLANQGLSGPLRFLQADA----------KRPE-----------REESKEGNFGTRLLSPGAAWIVLDILKDRPRPEDTL 502 (786) T ss_pred HHHHHCCCCCCCCCCCCCC----------CCCC-----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC T ss_conf 9997426665742133545----------6764-----------124666766887578888999999960378842113 Q ss_pred E-H-HCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC---- Q ss_conf 3-2-105996046760467897022798456987999998266898278986442121799999999997489830---- Q gi|254780752|r 668 T-G-KVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSS---- 741 (817) Q Consensus 668 ~-~-a~~~~~~iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~---- 741 (817) . . +.....++|.|||||.++||||.|||++.||++||||+-+++++ .+.+|...|+|||.+|...+.+..+.. T Consensus 503 ~~~~~~~~~~~~AwKTGTSyG~RDAWa~G~~~~Yti~VWvGn~~G~p~-~~~~G~~~AaPllf~i~d~l~~~~~~~~d~~ 581 (786) T TIGR02073 503 PKSSALSTRLPLAWKTGTSYGFRDAWAAGVSGRYTIGVWVGNFDGKPN-PGFIGAAAAAPLLFDILDALQASEASTRDRV 581 (786) T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEEEECCCCCCC-CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 100235566535776266478722168610587689997456899999-6402002344379999999763355312467 Q ss_pred -CCCCCC----CCEEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC Q ss_conf -067977----716998403227758899976089953178999865677776 Q gi|254780752|r 742 -RFVAPP----GMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGPAETYTVIDE 789 (817) Q Consensus 742 -~f~~P~----~iv~~~i~~~sG~la~~~~~~~~~e~f~~gt~P~~~~~~~~~ 789 (817) +.|.|. .|.++.+|..+|.++...|+.....+|.++..|.+.|..+.. T Consensus 582 ~~~P~~~~~~~~v~~~~~~~~~~~~~~~~c~~~~~~~~~p~~~p~~~~~~~~~ 634 (786) T TIGR02073 582 PELPRPLLVNIIVKRVPVGLVSGELKALPCPEQISTWFLPGSSPPKLSELHKP 634 (786) T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCC T ss_conf 78878430106888504666242101334224333321368886034100124 No 9 >COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=0 Score=903.39 Aligned_cols=561 Identities=31% Similarity=0.448 Sum_probs=491.2 Q ss_pred CCEEEECCCCCEEEEEEC---CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 877999078949666612---56046417996978885454332146113387379999999999863204788677611 Q gi|254780752|r 51 VTTRIHAGNGALMAEYAR---ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGAS 127 (817) Q Consensus 51 ~~t~iyd~dG~~i~~~~~---~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgS 127 (817) .+.+|+|+||+++..|.+ ++|.+++++||||.+++|+|+.||++||.|+|||+.+++||+++++. +|++++||| T Consensus 35 ~S~~V~DrdG~~Lr~f~~~Dg~wR~~~~l~eVsp~fi~ali~yED~~Fy~H~GVdp~al~RA~~q~~~---~G~vvsGgS 111 (733) T COG4953 35 YSRVVLDRDGTLLRAFADKDGEWRIPTPLEEVSPQFIEALINYEDKRFYWHPGVDPLALLRAAWQTLT---SGRVVSGGS 111 (733) T ss_pred CCCEEECCCCCEEEEEECCCCCEEEECCHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CCCCCCCCC T ss_conf 21225647997844042688727830654868989999999754433442479898999999999986---186245741 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEE Q ss_conf 47999888877088832999999999999998660799999997201426743310999999873542344030271254 Q gi|254780752|r 128 TITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYL 207 (817) Q Consensus 128 TITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~L 207 (817) |||||+||.+..-+ ||+.-|++|++.|++||.+|||+|||++|||.++||+|.+||+|||..||||++++||++|+|+| T Consensus 112 TlTMQvARlleP~~-Rtl~gK~~qi~rAiqLE~~lSK~EIL~lYLn~aPyGgNieGv~AAS~aYFgk~~~~Ls~aEAalL 190 (733) T COG4953 112 TLTMQVARLLEPRP-RTLGGKIRQIWRAIQLESRLSKREILELYLNRAPYGGNIEGVRAASLAYFGKEPKRLSLAEAALL 190 (733) T ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHH T ss_conf 57889998727677-77478899999999999732999999999742887874277788899982898243688888998 Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH Q ss_conf 44015764332111114667899888766654201112568887530111244543222345715679988531100124 Q gi|254780752|r 208 AALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGE 287 (817) Q Consensus 208 Agi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge 287 (817) |.|||+|++.+|.+||++++++||+||++|+.+|.++++|+..+..+++...... ....||||....+.+ T Consensus 191 avLPq~P~~~rpdr~~~~a~~AR~~vL~rm~~~g~~~~~~~~~a~le~v~~~~~~---~p~~APhfa~~l~~~------- 260 (733) T COG4953 191 AVLPQNPERRRPDRNPEAAEAARNRVLTRMAVQGVWSEEEAKRARLEPVPNRRRQ---LPFLAPHFAFRLLNQ------- 260 (733) T ss_pred HHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH---CCCCCHHHHHHHHHC------- T ss_conf 7566881121875168999999999999999826777889887524655552010---330038899999852------- Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC Q ss_conf 33125732898524888989999999987676544432100000012112488778633320133555410476521440 Q gi|254780752|r 288 KALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSH 367 (817) Q Consensus 288 ~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 367 (817) +..+=+|+||||.++|+..|+.+++..... T Consensus 261 ---~~~~~~I~tTLd~~lQr~lE~~ar~~~~~l----------------------------------------------- 290 (733) T COG4953 261 ---YPKGDIIVTTLDANLQRRLEEQARDYASRL----------------------------------------------- 290 (733) T ss_pred ---CCCCCEEEEECCHHHHHHHHHHHHHHHHCC----------------------------------------------- T ss_conf ---999881565017558999999999998514----------------------------------------------- Q ss_pred EEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEC Q ss_conf 26765203344310000244423488896652001122333210000136463101235665157752255531166406 Q gi|254780752|r 368 ITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMD 447 (817) Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id 447 (817) -+...+|+++|| T Consensus 291 --------------------------------------------------------------------~~~~saAvlvvD 302 (733) T COG4953 291 --------------------------------------------------------------------GPRNSAAVLVVD 302 (733) T ss_pred --------------------------------------------------------------------CCCCCEEEEEEE T ss_conf --------------------------------------------------------------------876642699996 Q ss_pred CCCCCCEEEEECCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEEEEEECCCCC Q ss_conf 566661178721323444---3320012335665310000127887402-466544565237880378526664127654 Q gi|254780752|r 448 PRTGRILATIGGFSYSQS---EFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIWKPENYSKNF 523 (817) Q Consensus 448 ~~TG~IlA~vGg~d~~~~---~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~N~~~~~ 523 (817) ++||+|+|+||+.||.+. ..+.-+++.|+||||+|||+|+.|||+| +.|.|++.|.|..|.+ |+|+||+..| T Consensus 303 ~~t~eVla~VGS~d~fd~~r~G~idm~~a~RSPGStLKPFiY~LA~D~GLI~p~Tll~D~P~~fg~----YrP~Nfd~~F 378 (733) T COG4953 303 NRTMEVLAYVGSADFFDASRSGHIDMVRALRSPGSTLKPFVYGLAFDQGLIHPETLLKDVPTRFGD----YRPENFDSNF 378 (733) T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCC T ss_conf 577405788425455673213634311330388530003665543014654653114678701067----5886666556 Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEE Q ss_conf 4225666666530440225887625972352110135565556----766563445100003776743220157440354 Q gi|254780752|r 524 SGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM----LPVLPMSLGAGETTVLRMVSAYAVFANGGKQIR 599 (817) Q Consensus 524 ~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~----~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~ 599 (817) +|+|++|+||.+|+|+|+|++++++|++.+...+++.|+.-.. .+.+|+.||+.++|+.|||++|++|||+|...+ T Consensus 379 ~G~VsvreAL~~SLNiPAV~lLe~~gp~rf~~rl~~ag~~L~~P~~~~~GLsLiLGg~gi~L~dLa~lYa~lAn~G~~~~ 458 (733) T COG4953 379 HGPVSVREALIKSLNIPAVRLLEAVGPPRFAARLRQAGVHLYLPEGAAPGLSLILGGAGITLEDLAQLYAALANQGKAGP 458 (733) T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEC T ss_conf 67400999998743862999998739398999999679987789766887258855776649999999999861894310 Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEE Q ss_conf 46667641024430133585323556666666554554675543535899999999999998734804321059960467 Q gi|254780752|r 600 PSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAG 679 (817) Q Consensus 600 P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaG 679 (817) -+... . ......++.+|+.+|+++.++|.++..-|+...+...-+|||. T Consensus 459 L~~~~-------------~------------------~~~~~~~~l~s~~Aaw~i~dIl~~~~~P~~~~~~~~~~~piaw 507 (733) T COG4953 459 LRDTL-------------D------------------DDPLTERTLLSPGAAWQILDILSDVARPGLPNGALPSVRPIAW 507 (733) T ss_pred CCCCC-------------C------------------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE T ss_conf 43467-------------8------------------7888786356860279999998504798865667665665057 Q ss_pred EECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHC Q ss_conf 60467897022798456987999998266898278986442121799999999997489830067977716998403227 Q gi|254780752|r 680 KTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTG 759 (817) Q Consensus 680 KTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG 759 (817) |||||.++||+|-|||+++||++||||.-|++++ .+.+|-..|+|+|.++|.. +.-.+...+.+++++++..||..+| T Consensus 508 KTGTSyGyRDAWsvG~~g~Y~l~VWvGr~dg~~~-~g~~G~~~AaPLlf~v~~~-~~~~~~~~~~p~p~~~~~~i~~~p~ 585 (733) T COG4953 508 KTGTSYGYRDAWSVGVFGRYVLGVWVGRFDGTPV-PGLSGVATAAPLLFQVNNI-IARSGRLAELPRPGLVQLNIICVPG 585 (733) T ss_pred ECCCCCCCCCCEEECCCCCEEEEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 4277666533146323586589999747999847-7601423456789988888-6426665567885200035433666 Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 7588999760899531789998656 Q gi|254780752|r 760 MLSKKGDPDTIIEAFKPGTGPAETY 784 (817) Q Consensus 760 ~la~~~~~~~~~e~f~~gt~P~~~~ 784 (817) ..+.+.|+ . ||++|..|..-. T Consensus 586 ~~~~~~~~--~--~~~dg~~P~t~~ 606 (733) T COG4953 586 GAATPDVD--L--LFLDGKYPITLS 606 (733) T ss_pred CCCCCCCC--E--EECCCCCCCCHH T ss_conf 64467776--1--211577883022 No 10 >PRK13481 glycosyltransferase; Provisional Probab=100.00 E-value=0 Score=544.53 Aligned_cols=183 Identities=37% Similarity=0.616 Sum_probs=176.9 Q ss_pred CCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH Q ss_conf 25604641799697888545433214611338737999999999986320478867761147999888877088832999 Q gi|254780752|r 68 RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDR 147 (817) Q Consensus 68 ~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~R 147 (817) .|+|.+|++|+||++|++||||+||+|||+|+|||++||+||++.|+. |+.+|||||||||||||+|+++|||+.| T Consensus 77 e~kr~~V~~d~IP~~l~~A~IA~ED~rFy~H~GvD~~~i~RA~~~nl~----~~~~qGGSTITQQlaKn~~l~~ert~~R 152 (269) T PRK13481 77 ENKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALFSTIS----DRDVQGGSTITQQVVKNYFYDNDRSFTR 152 (269) T ss_pred HHCCCEECHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH----CCCCCCCCHHHHHHHHCCCCCCCCCHHH T ss_conf 437856157978999984135697485235879899999999999974----7988863289999997505678777999 Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC-------CHHHCCCCCEEEEEEECCCCCCCCCC Q ss_conf 99999999999866079999999720142674331099999987354-------23440302712544401576433211 Q gi|254780752|r 148 KIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNK-------SVSELTIEEAAYLAALPKGPSNYDPF 220 (817) Q Consensus 148 K~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K-------~~~dLtl~EaA~LAgi~~~Ps~y~P~ 220 (817) |++|+++|++||++|||+||||+|||+||||+|+|||++||+.|||| +++|||++|||+||||+|+|+.|||. T Consensus 153 KikE~~lA~~lE~~~sK~eILe~YLN~iy~G~~~yGIeaAA~~YFGk~~~k~nk~~s~Ltl~EaA~LAgl~~aPs~YnP~ 232 (269) T PRK13481 153 KVKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNIN 232 (269) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCC T ss_conf 99999999999864599999999986715688709999999998588812247893549999999984217786667987 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC Q ss_conf 1114667899888766654201112568887530 Q gi|254780752|r 221 RKNKAAIARRNWVIDRMEENGYISQEQALVAKQK 254 (817) Q Consensus 221 ~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~ 254 (817) ++|+++++||+.||.+|+++||||++||++|+++ T Consensus 233 ~~~~~a~~Rr~~VL~~M~~~g~It~~qy~~A~ae 266 (269) T PRK13481 233 NMSENFTQRVSTNLEKMKQQNYINETQYQQAMSQ 266 (269) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 7989999999999999998699999999999976 No 11 >PRK00056 mtgA monofunctional biosynthetic peptidoglycan transglycosylase; Provisional Probab=100.00 E-value=0 Score=489.88 Aligned_cols=225 Identities=32% Similarity=0.447 Sum_probs=185.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCH Q ss_conf 78999999999999999999999999999998704698978851247788779990789496666125604641799697 Q gi|254780752|r 2 YYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPS 81 (817) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~ 81 (817) .|-+.++++|++.++++++++.++.+ +++.. ..|+.+.+...++ ..+...+..|..+ +|+||++|+||+ T Consensus 2 ~rw~~r~~~~~~~~~~~~~~~~~~~v-~~~~~---~~pp~t~~m~~r~-~~~~~~~~~~~~~------~r~~v~~~~i~~ 70 (226) T PRK00056 2 LRWLRRLLRRLLRALLALALFSLLQI-ALFRF---VPPPFSAVMVERP-VSAWLLGDFGAVL------HRQWVPYDQISP 70 (226) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC---CCCCCCHHHHHCH-HHHHHCCCCCCCC------EEEEECHHHCCH T ss_conf 62799999999999999999999987-76420---1899888898543-5572106788750------223777898799 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 88854543321461133873799999999998632047886776114799988887708883299999999999999866 Q gi|254780752|r 82 HVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKA 161 (817) Q Consensus 82 ~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~ 161 (817) +|++|+||+||+|||+|+|||+.+|.||+..|++ +|+..|||||||||||||+|++++||+.||++|+++|++||+. T Consensus 71 ~l~~AviA~ED~rF~~H~GvD~~~i~rA~~~n~~---~g~~~~GgSTITqQlaKnlfl~~~rs~~RK~~E~~~a~~lE~~ 147 (226) T PRK00056 71 NLKRAVIAAEDQKFPEHWGFDVDAIEKALEHNER---GGRRIRGASTISQQTAKNLFLWDGRSWVRKGLEAPLTLMIELV 147 (226) T ss_pred HHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9998899996474764789899999999999985---6994888467999999987148877699999999999999976 Q ss_pred HCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 0799999997201426743310999999873542344030271254440157643321111146678998887666542 Q gi|254780752|r 162 YDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN 240 (817) Q Consensus 162 ~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~ 240 (817) ||||||||+|||.||||+|+|||++||++||||+++|||++|||+||||+|+|++|||.++++.+++|+++||++|.+. T Consensus 148 ~sK~~ILe~YLN~v~~G~g~yGv~aAa~~YF~k~~~~Lt~~eaA~LA~il~~P~~y~p~~~~~~~~~R~~~IL~~M~ql 226 (226) T PRK00056 148 WSKRRILEVYLNIAEWGDGVFGAEAAARHYFGKPASKLSASQAALLAAVLPNPRRFDANRPSPYVRRRAAWILRRMRQL 226 (226) T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 4999999999767572886678999999982999577999999999621779776799999899999999999998509 No 12 >TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). Probab=100.00 E-value=0 Score=463.29 Aligned_cols=268 Identities=31% Similarity=0.488 Sum_probs=225.9 Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCC---------------------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCC Q ss_conf 311664065666611787213234443---------------------320012335665310000127887402-4665 Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSE---------------------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPA 497 (817) Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------------------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~ 497 (817) .|++|+|||+||+||||+.-++|+.+. +|||++..++||||||||+.++|||+| ++|+ T Consensus 248 ~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe~g~i~~~ 327 (592) T TIGR03423 248 RGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALEEGVITPD 327 (592) T ss_pred CEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 35699996688848999617887702303787988999874396654212011224468726899999999975999998 Q ss_pred CCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--------- Q ss_conf 44565237880378526664127654422566666653044022588762597235211013556555676--------- Q gi|254780752|r 498 SVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLP--------- 568 (817) Q Consensus 498 t~~~D~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~--------- 568 (817) ++++|.. .+..++..| +||.+..+|.+++++||++|||+.++++++++|.+++.+++++|||.++..- T Consensus 328 ~~~~~~g-~~~~~~~~i--~d~~~~~~g~lt~~~~l~~SsNvg~~~ia~~lg~~~~~~~~~~fGfg~~tgidlp~E~~G~ 404 (592) T TIGR03423 328 TRINCPG-YFQLGGRRF--RCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIAEYAKKFGFGQKTGIDLPGEKSGL 404 (592) T ss_pred CEEECCC-CCCCCCCCC--CCCCCCCCCEECHHHHHHEEECHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 5896078-302598523--0478888630145544103833999789886187889999984678877689987774886 Q ss_pred -------------------CCCCCCCCC--EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf -------------------656344510--00037767432201574403544666764102443013358532355666 Q gi|254780752|r 569 -------------------VLPMSLGAG--ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNY 627 (817) Q Consensus 569 -------------------~~s~alG~~--~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~ 627 (817) ..++++|++ .+||||||+||++|||+|++++||+|++|.|.+|+++.+.++.+ T Consensus 405 lp~~~w~~~~~~~~~~~~~~~~~siGQG~i~~TplQla~a~~~iaN~G~~~~P~lv~~i~d~~g~~~~~~~~~~------ 478 (592) T TIGR03423 405 VPSREWKRKRFGQPWYPGDTLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQETEPEV------ 478 (592) T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCC------ T ss_conf 89968976420577774423354103674315889999999988619838521899975168885664048754------ Q ss_pred CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC--CCEEHHCC-CCCCEEEEECCCCCC----------------- Q ss_conf 6666554554675543535899999999999998734--80432105-996046760467897----------------- Q gi|254780752|r 628 DTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH--GTATGKVR-LNRPVAGKTGTTSSY----------------- 687 (817) Q Consensus 628 ~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~--GTg~~a~~-~~~~iaGKTGTt~~~----------------- 687 (817) ....++|+++|..|++||+.||+. |||+++.. .++.|||||||++.. T Consensus 479 -------------~~~~~is~~ta~~v~~~m~~VV~~~~GTg~~a~~~~gy~vaGKTGTAq~~~~~~~~~~~~~~~~~~~ 545 (592) T TIGR03423 479 -------------LPPLPISPENLDVVREGMRDVVNEPRGTARRARLGLDYKMAGKTGTAQVVSLKQGEKYDAEQIPERL 545 (592) T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf -------------5665789999999999999983289947575248999879999636762457887532555455456 Q ss_pred C-CEEEEEEC----CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 0-22798456----98799999826689827898644212179999999999748 Q gi|254780752|r 688 R-DTWFIGYT----PTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKN 737 (817) Q Consensus 688 ~-D~WfvG~t----p~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~ 737 (817) + .+||+||. |+|++.|-| |+ ..+||.+|||||++||+.++++ T Consensus 546 ~~~asFvG~~P~~~P~~~v~V~v--~~------~~~Gg~~AaPvf~~I~e~y~~~ 592 (592) T TIGR03423 546 RDHALFVAFAPYDNPEIAVAVIV--EH------GGGGSSAAAPIARKIMDAYFLG 592 (592) T ss_pred CCCEEEEEEEECCCCEEEEEEEE--EC------CCCCHHHHHHHHHHHHHHHHCC T ss_conf 77779999978789879999999--68------9951148999999999998576 No 13 >pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family. Probab=100.00 E-value=0 Score=468.61 Aligned_cols=258 Identities=31% Similarity=0.469 Sum_probs=223.4 Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEE Q ss_conf 11664065666611787213234443-----320012335665310000127887402-466544565237880378526 Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSE-----FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIW 514 (817) Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~-----~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~ 514 (817) ||+|+|||+||+||||+|+++|+.++ +|||+|+.||||||||||+|++|||+| ++|++.++|.+... .+ -| T Consensus 1 Ga~Vv~d~~TG~IlAm~~~p~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaaLe~g~~~~~~~~~~~~~~~-~~--~~ 77 (296) T pfam00905 1 GSAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALDNGILKPEETFDDWPGLP-VG--GY 77 (296) T ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CC--CC T ss_conf 9599998999929999868988978766422218766865884899999999999879988761114776434-79--93 Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-----------------CCCCCCCC- Q ss_conf 664127654422566666653044022588762597235211013556555676-----------------65634451- Q gi|254780752|r 515 KPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLP-----------------VLPMSLGA- 576 (817) Q Consensus 515 ~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~-----------------~~s~alG~- 576 (817) .++||++.++|.++|++||++|||+++++|++++|.+++.+++++|||..+... ..++++|+ T Consensus 78 ~~~n~~~~~~G~~tl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~~~~~~~~~~~~G~G 157 (296) T pfam00905 78 TIKDWNQDGSGTITLREALEYSSNWYFQQLALKLGKDKLRDYLKKFGYGNKTGIGLPGESAGILPPRYRGDGATTAWGQG 157 (296) T ss_pred CEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECC T ss_conf 22468999887554999998509677899999708478999999718887768888644356677755431010101067 Q ss_pred -CEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH Q ss_conf -0000377674322015744035446667641024430133585323556666666554554675543535899999999 Q gi|254780752|r 577 -GETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817) Q Consensus 577 -~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817) ..+||||||++|++|||+|++++||+|++|++.+++.. ..+|++|++++++|+ T Consensus 158 ~~~vTplq~a~aya~iAN~G~~~~p~~v~~i~~~~~~~~--------------------------~~~~~is~~~a~~v~ 211 (296) T pfam00905 158 SLTITPLQQAQAYATIANNGKLVPPHIVKSIKKLVDPKV--------------------------LGKLPISKSTAEKVK 211 (296) T ss_pred CCCCCHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCC--------------------------CCCCCCCHHHHHHHH T ss_conf 662269999999999871996837699950014789822--------------------------234038999999999 Q ss_pred HHHHHHHHCCCEEHHCCCCCCEEEEECCCC---------CCCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCC Q ss_conf 999998734804321059960467604678---------9702279845----698799999826689827898644212 Q gi|254780752|r 656 SMLEGVIKHGTATGKVRLNRPVAGKTGTTS---------SYRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTL 722 (817) Q Consensus 656 ~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~---------~~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~ 722 (817) +||+.||+.||++ +...++++||||||++ +.+|+||+|| +|+|+++||++ ++. +.+.+|+.. T Consensus 212 ~~l~~vv~~gt~~-~~~~~~~vaGKTGTaq~~~~~~~~~~~~~awFvG~~P~~~p~~~v~V~v~--~~~--~~~~~Gg~~ 286 (296) T pfam00905 212 DMLKLVVNDGGGA-AAVPGYKVAGKTGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLID--DPK--GDGGAGGKV 286 (296) T ss_pred HHHHHHCCCCCCC-CCCCCCCEEEEEECCEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEC--CCC--CCCCCHHHH T ss_conf 9998507788743-34689726899825366588888788658999999987998299999986--689--899860689 Q ss_pred CHHHHHHHHH Q ss_conf 1799999999 Q gi|254780752|r 723 TAPIFNAFMK 732 (817) Q Consensus 723 a~piw~~~m~ 732 (817) |+|||++||+ T Consensus 287 AaPi~~~i~~ 296 (296) T pfam00905 287 AAPIFKDILE 296 (296) T ss_pred HHHHHHHHHC T ss_conf 9999999869 No 14 >pfam00912 Transgly Transglycosylase. The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively. The transglycosylase domain catalyses the polymerisation of murein glycan chains. Probab=100.00 E-value=0 Score=451.96 Aligned_cols=174 Identities=48% Similarity=0.821 Sum_probs=168.9 Q ss_pred CCCEEEEEECCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 89496666125604641799697888545433214611338737999999999986320478867761147999888877 Q gi|254780752|r 59 NGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFL 138 (817) Q Consensus 59 dG~~i~~~~~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~ 138 (817) ||++|++++.++|.+|++|+|||+|++|+||+||+|||+|+|||+.+|+||++.|++ +|+.++||||||||||||+ T Consensus 1 ~g~~l~~~~~~~r~~v~~~~ip~~l~~A~ia~ED~~F~~H~Gid~~~i~rA~~~~~~---~~~~~~GgSTITqQl~k~~- 76 (174) T pfam00912 1 DGTLLATFGEENRVYVPLDEIPPHLINAVVAIEDRRFYSHPGVDPKGIARAALSNLR---SGGIVQGGSTITQQLAKNL- 76 (174) T ss_pred CCCCHHHHHHCCCEEECHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCCCCCHHHHHHHHC- T ss_conf 976233332006758328996999996842214864243888687899999999831---5898888463999998762- Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCC Q ss_conf 08883299999999999999866079999999720142674331099999987354234403027125444015764332 Q gi|254780752|r 139 LTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYD 218 (817) Q Consensus 139 l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~ 218 (817) .+||+.||++|+++|++||+.|||+||||+|||.||||+|+|||++||++||||+++|||++|||+||||+|+|+.|| T Consensus 77 --~~rt~~RK~~E~~~a~~lE~~~sK~eILe~YLN~v~~G~~~~Gi~aAs~~yFgk~~~~L~~~eaA~La~l~~~P~~y~ 154 (174) T pfam00912 77 --TERTLSRKLREAILALRLERRYSKDEILELYLNTVYFGGGIYGVEAAARAYFGKPPSDLTLAEAALLAGLLPAPSRYN 154 (174) T ss_pred --CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC T ss_conf --678899999999999999987798999999997646188874899999999487703199999999962178966479 Q ss_pred CCCCHHHHHHHHHHHHHHHH Q ss_conf 11111466789988876665 Q gi|254780752|r 219 PFRKNKAAIARRNWVIDRME 238 (817) Q Consensus 219 P~~np~~a~~Rr~~VL~~M~ 238 (817) |.++++++.+||+.||++|+ T Consensus 155 p~~~~~~~~~R~~~vl~~m~ 174 (174) T pfam00912 155 PLRNPERAKKRRNLVLKRMV 174 (174) T ss_pred CCCCHHHHHHHHHHHHHHHC T ss_conf 98898999999999998449 No 15 >PRK10795 penicillin-binding protein 2; Provisional Probab=100.00 E-value=0 Score=417.11 Aligned_cols=268 Identities=22% Similarity=0.333 Sum_probs=211.9 Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCC---------------------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCC Q ss_conf 311664065666611787213234443---------------------320012335665310000127887402-4665 Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSE---------------------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPA 497 (817) Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------------------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~ 497 (817) .||+|+|||+||+||||+.-++|+.+. +|||+++.++||||||||+.++|||.| ++|+ T Consensus 270 ~gavVvmd~~TGeILAmaS~P~fdpN~~~~~~~~~~~~~~~~~~~~p~~Nra~~~~yePGStfK~~t~~aaLe~g~i~~~ 349 (619) T PRK10795 270 RAAVVVTDPRTGGILALVSNPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRN 349 (619) T ss_pred CCEEEEEECCCCCEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCHHEECCCCCCCCHHHHHHHHHHHCCCCCCC T ss_conf 72599996798848999816877846641577878899863386765202110116689860699999999974999999 Q ss_pred CCCCCCE-EEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCC--------- Q ss_conf 4456523-788037852666412765442256666665304402258876259723521101355655567--------- Q gi|254780752|r 498 SVIMDAP-IEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKML--------- 567 (817) Q Consensus 498 t~~~D~p-~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~--------- 567 (817) +.+.|.. +.+.+... ..++|....+|.+++++||++|||+.+++++.++|.+++.+++++|||.++.. T Consensus 350 ~~~~~~g~~~~~~~~~--~~~~~~~~g~G~~~~~~al~~SsNv~~~~i~~~lg~~~~~~~~~~fG~g~~tgi~lp~E~~G 427 (619) T PRK10795 350 TSLFDPGWWQLPGSEK--RYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSG 427 (619) T ss_pred CEEEECCCEEECCCCC--CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 7796099337678862--25668889997400888988635599999988705225544555327887668887665578 Q ss_pred --C-----------------CCCCCCCCC--EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC Q ss_conf --6-----------------656344510--0003776743220157440354466676410244301335853235566 Q gi|254780752|r 568 --P-----------------VLPMSLGAG--ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN 626 (817) Q Consensus 568 --~-----------------~~s~alG~~--~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~ 626 (817) | ..++++|++ .+||||||++|++|||+|++++||+|+++.+ +|+++...++.. T Consensus 428 ~~p~~~w~~~~~~~~w~~~~~~~~siGQG~~~~TPlQla~~~~aiaN~G~~~~P~lv~~~~~-~~~~v~~~~~~~----- 501 (619) T PRK10795 428 NMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAE-DGKQVPWVQPHE----- 501 (619) T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC-CCCEEEECCCCC----- T ss_conf 67875665420246666454555412042556359999999999963980863479987514-896642036665----- Q ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH--CCCEEHHCC-CCCCEEEEECCCCC----------------- Q ss_conf 6666655455467554353589999999999999873--480432105-99604676046789----------------- Q gi|254780752|r 627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK--HGTATGKVR-LNRPVAGKTGTTSS----------------- 686 (817) Q Consensus 627 ~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~--~GTg~~a~~-~~~~iaGKTGTt~~----------------- 686 (817) .....++.++...+.++|+.||+ .|||+++.. .++.|||||||++- T Consensus 502 --------------~~~~~~~~~~~~~~~~~m~~Vv~~~~GT~~~~~~~~~~~vaGKTGTAqv~~~~~~~~~~~~~~~~~ 567 (619) T PRK10795 502 --------------PPVGDIHSGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAER 567 (619) T ss_pred --------------CCCCCCCHHHHHHHHHHHHHHEECCCCEEEHHCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCC T ss_conf --------------544555778999999999986727995256000589967999825324636678753234334545 Q ss_pred CC-CEEEEEEC----CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 70-22798456----987999998266898278986442121799999999997489 Q gi|254780752|r 687 YR-DTWFIGYT----PTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNI 738 (817) Q Consensus 687 ~~-D~WfvG~t----p~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~ 738 (817) .+ .+||+||. |+|+++|-| |+ ++ +|..|+||++++|++++-+- T Consensus 568 ~~~hawf~gfaP~d~P~~av~V~v--e~------gg-~G~~aapi~r~i~~~~l~~~ 615 (619) T PRK10795 568 LRDHKLMTAFAPYNNPQVAVAIIL--EN------GG-AGPAVGTIMRQILDHIMLGD 615 (619) T ss_pred CCCCEEEEEEEECCCCEEEEEEEE--EC------CC-CCCHHHHHHHHHHHHHHCCC T ss_conf 677759999977689889999999--79------98-40268999999999996489 No 16 >COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=0 Score=397.10 Aligned_cols=267 Identities=32% Similarity=0.530 Sum_probs=209.1 Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCC--------------CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEE Q ss_conf 3116640656666117872132344433--------------20012335665310000127887402466544565237 Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEF--------------NRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPI 505 (817) Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~--------------NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~ 505 (817) +|++|+|||+||+||||+.-++|+.+.| |||++..++||||||||+.++||++| ++.+.|.+. T Consensus 267 ~g~~vv~dp~tGeILAmas~P~ydpn~~~~~~~~~~~~~~~~n~a~~~~yePGStfK~~t~aaaL~~g---~~~~~~~~~ 343 (599) T COG0768 267 GGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRKPLLNRAVTGTYEPGSTFKPITAAAALETG---NTGLFDPGS 343 (599) T ss_pred CEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCCCCCCCC T ss_conf 04899981788848999568999986223321002334202447551704782108999999999769---985348985 Q ss_pred EEECCCCEEEEEECCCCCCC----HHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC------------CC- Q ss_conf 88037852666412765442----25666666530440225887625972352110135565556------------76- Q gi|254780752|r 506 EVVSRGKIWKPENYSKNFSG----ASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM------------LP- 568 (817) Q Consensus 506 ~~~~~~~~~~p~N~~~~~~G----~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~------------~~- 568 (817) .+...+.. .+.|....++ .+++.+||++|||+.+++++..+|.+.+.+++++|||..+. ++ T Consensus 344 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~al~~SsNv~f~~la~~~g~~~~~~~~~~fGfg~~t~idl~~e~~g~~p~~ 421 (599) T COG0768 344 VLDGNGPK--IRIWGRTGHDYGGRPLTLTEALQKSSNVGFAKLALRLGPDGLYDYLKKFGFGQKTGIDLPGETSGLLPSR 421 (599) T ss_pred EEECCCCE--EEECCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 47369861--6418815678776312899998870809999999985858899999876998755679866425657982 Q ss_pred ---------CCCCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf ---------656344510-0003776743220157440354466676410244301335853235566666665545546 Q gi|254780752|r 569 ---------VLPMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEI 638 (817) Q Consensus 569 ---------~~s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~ 638 (817) ..++++|++ .+||||||.||++|||+|++++||+|+++.+.++......+ T Consensus 422 ~~~~~~~~~~~~~siGQ~~~vTPlQla~~~a~iaN~G~~~~P~lv~~~~~~~~~~~~~~~-------------------- 481 (599) T COG0768 422 EPWRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPP-------------------- 481 (599) T ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCCC-------------------- T ss_conf 001367211244047874020899999999999629979425897124465554212466-------------------- Q ss_pred CCCCCEECCHHHHHHHHHHHHHHHHCC---CEEHHCCCCCCEEEEECCCCCC-----------CCEEEEEEC----CCEE Q ss_conf 755435358999999999999987348---0432105996046760467897-----------022798456----9879 Q gi|254780752|r 639 IDKREQVLDPMTAYQITSMLEGVIKHG---TATGKVRLNRPVAGKTGTTSSY-----------RDTWFIGYT----PTLV 700 (817) Q Consensus 639 ~~~~~~v~s~~~a~~~~~~L~~vv~~G---Tg~~a~~~~~~iaGKTGTt~~~-----------~D~WfvG~t----p~~~ 700 (817) ....+++|++++..+.+||+.|++.| ++..+...|++|||||||++-. ..+||+||. |+|+ T Consensus 482 -~~~~~~is~~~~~~v~~~m~~Vv~~~~gg~~~~a~v~g~~iaGKTGTAq~~~~~~~~y~~~~~~~~Fvg~aP~d~P~~~ 560 (599) T COG0768 482 -VLKKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGRYHAWFVGFAPADNPKYA 560 (599) T ss_pred -CCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCEEEEEEEEECCCCCEE T ss_conf -4345558999999999999987717877641104568952376501150334788863456534899997416899799 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 99998266898278986442121799999999997489 Q gi|254780752|r 701 VGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNI 738 (817) Q Consensus 701 ~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~ 738 (817) ++|-| |++.. .+|+..|+|++++||+.++..+ T Consensus 561 v~v~v--~~~~~----~~g~~~aapv~~~I~~~~~~~~ 592 (599) T COG0768 561 VAVLV--DNPGG----GYGGAVAAPVFKKIMERLLDYL 592 (599) T ss_pred EEEEE--ECCCC----CCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999--77887----7623567999999999999973 No 17 >TIGR02214 spoVD_pbp stage V sporulation protein D; InterPro: IPR011927 This entry describes the SpoVD family of homologs of the cell division protein FtsI, a penicillin binding protein. This family is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of SpoVD.. Probab=100.00 E-value=0 Score=370.43 Aligned_cols=271 Identities=27% Similarity=0.408 Sum_probs=229.2 Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCC---------------------CCCCCCCCCCCCCCHHHHHHHHHHCCC-C-CC Q ss_conf 116640656666117872132344433---------------------200123356653100001278874024-6-65 Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEF---------------------NRSTQAMRQPGSCFKPIVYAAALDSGY-T-PA 497 (817) Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~---------------------NrA~~~~rqpGSt~KP~vy~~Ale~G~-t-p~ 497 (817) ..+++|||+||+||+|+.-++|+.+.+ ||++...++|||+||.++.+|||+.|+ . -+ T Consensus 249 ~~i~vMnpknGeILGM~nrP~ydpn~p~~~s~~~~~kdesa~LQ~~WRN~~v~d~yEPGS~FKiiT~~AA~~eg~v~le~ 328 (660) T TIGR02214 249 VSIIVMNPKNGEILGMSNRPSYDPNDPRDKSPEVKRKDESAKLQKSWRNRVVSDAYEPGSIFKIITSSAAMEEGIVKLEK 328 (660) T ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCEECCC T ss_conf 89999769997176520678878777430374360542036886501885011221698477999999997327400036 Q ss_pred CCCCC-CEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC------ Q ss_conf 44565-23788037852666412765442256666665304402258876259723521101355655567665------ Q gi|254780752|r 498 SVIMD-APIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVL------ 570 (817) Q Consensus 498 t~~~D-~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~------ 570 (817) +.|+| .-.++. +. +-++|....||.-|+-+-|++|||+.|++|+++||.+++.+|+++|||.++..-+| T Consensus 329 d~FYd~G~~~vg--~~--~~kCWK~~GHG~qtF~~vv~NSCN~GF~elG~~LG~~~L~~Yi~~FGFG~~tGIdL~GEA~G 404 (660) T TIGR02214 329 DKFYDDGSATVG--GK--KIKCWKPGGHGSQTFLEVVQNSCNVGFIELGERLGAEKLNEYIKKFGFGSKTGIDLPGEAAG 404 (660) T ss_pred CEEECCCEEEEC--CC--EEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEE T ss_conf 501078414434--82--66767688695546478753277778998855407668999998428987688666774103 Q ss_pred --------------CCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCC---CC-CCCCCCCCCCCCCCCCC Q ss_conf --------------6344510-00037767432201574403544666764102443---01-33585323556666666 Q gi|254780752|r 571 --------------PMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGK---TI-FNQEQRICDDCNYDTWN 631 (817) Q Consensus 571 --------------s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~---vi-~~~~~~~~~~~~~~~~~ 631 (817) ++++|+. .|||+|..+|.++.||||.+++||++++|.|.++| +| .+..|. T Consensus 405 Il~n~~~v~pvdlAT~SfGQ~n~v~~iQ~~~A~~AvaNGG~L~~P~i~~e~~d~~~NG~~~v~~~f~P~----------- 473 (660) T TIGR02214 405 ILKNLEKVGPVDLATISFGQANTVTPIQLMTAVNAVANGGKLIQPHIMKEISDKENNGRKVVDKKFEPE----------- 473 (660) T ss_pred EEECCCCCCCHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCC----------- T ss_conf 341376556122543310520004778999999987516656613312202175789515887530770----------- Q ss_pred CCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEEEECCCCCC-----------CCEEEEEECC--- Q ss_conf 55455467554353589999999999999873480432105996046760467897-----------0227984569--- Q gi|254780752|r 632 GQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSY-----------RDTWFIGYTP--- 697 (817) Q Consensus 632 ~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~~~-----------~D~WfvG~tp--- 697 (817) ..++|+|++++..++.+|+.||..|||+.|.+.|+.|+|||||+|.- -=+.||||.| T Consensus 474 ---------~~~~vv~~~~~~~l~~~LE~vVs~GsGk~AfIdGyrvGGKTGTAqKv~P~~G~Y~~g~YivSFvG~APa~d 544 (660) T TIGR02214 474 ---------VKRKVVDKETTEKLRLALEKVVSKGSGKDAFIDGYRVGGKTGTAQKVKPEDGGYLEGEYIVSFVGFAPADD 544 (660) T ss_pred ---------EEEEECCHHHHHHHHHHHHCEEECCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCEEEEEEECCCCCC T ss_conf ---------12353267789999886411451477756110346957730453444788893414866899864278898 Q ss_pred -CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf -879999982668982789864421217999999999974898 Q gi|254780752|r 698 -TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIP 739 (817) Q Consensus 698 -~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p 739 (817) ++++-|-| |+|++ ...+||-+|||+++++|+.++.-+. T Consensus 545 P~v~~~V~v--D~P~~--~~~FGG~vAAPv~~~v~~d~l~~lG 583 (660) T TIGR02214 545 PEVAVLVVV--DNPKG--VEQFGGLVAAPVVGEVFNDILNYLG 583 (660) T ss_pred CCEEEEEEE--ECCCC--CCCCCCEEECHHHHHHHHHHHHHCC T ss_conf 847999998--67989--7201344874146889998887557 No 18 >TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=100.00 E-value=0 Score=377.53 Aligned_cols=169 Identities=33% Similarity=0.506 Sum_probs=162.9 Q ss_pred CEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 60464179969788854543321461133873799999999998632047886776114799988887708883299999 Q gi|254780752|r 70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKI 149 (817) Q Consensus 70 ~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~ 149 (817) .+.|||||+||+.|+.|+||+||.+|-+|+|+|+-||-+|+-.|-+ +|+++.|||||+||||||+||.++|++.||. T Consensus 54 ~~~Wv~yd~IS~nlk~AvIAsEDa~F~~H~GFD~eaiq~A~e~Nek---~g~~v~GgSTISQQlAKNlFLw~gr~~lRKG 130 (228) T TIGR02070 54 QHRWVPYDKISPNLKRAVIASEDAKFVEHHGFDFEAIQKALEKNEK---SGKVVRGGSTISQQLAKNLFLWSGRSYLRKG 130 (228) T ss_pred CCCCCCHHHCCHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH---CCCEEECCCHHHHHHHHHHHHCCCCCHHHHH T ss_conf 4577784443811201041114657555468675799999996312---4875605530789999986422787401466 Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHH----H Q ss_conf 999999999866079999999720142674331099999987354234403027125444015764332111114----6 Q gi|254780752|r 150 KEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNK----A 225 (817) Q Consensus 150 ~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~----~ 225 (817) .|++..+.||..+||+-|||-|||.|-||+|.||+||||++||+++++.||-.|||.||++++||-.|+--++-. . T Consensus 131 ~Ea~~T~llE~~w~K~RIlEvYLNs~EwG~GvfGaEAAsryYF~~~A~~Ls~~QAA~LAA~LPnP~~y~~~r~~~nvhi~ 210 (228) T TIGR02070 131 LEAWITVLLETLWSKKRILEVYLNSVEWGNGVFGAEAASRYYFKRSASRLSRSQAARLAAVLPNPKKYKENRPGPNVHIY 210 (228) T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEE T ss_conf 79999999988748731141111010166580477899775225265540588999998741582122310689851664 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 6789988876665420 Q gi|254780752|r 226 AIARRNWVIDRMEENG 241 (817) Q Consensus 226 a~~Rr~~VL~~M~~~g 241 (817) .++|...++++|-..+ T Consensus 211 v~~k~~~I~~~M~~~~ 226 (228) T TIGR02070 211 VRKKARWILKRMGYVE 226 (228) T ss_pred EHHHHHHHHHHHHHCC T ss_conf 1165689998643036 No 19 >COG2602 Beta-lactamase class D [Defense mechanisms] Probab=98.81 E-value=4.1e-08 Score=72.68 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=111.8 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCE Q ss_conf 33566531000012788740246654456523788037852666412765442256666665304402258876259723 Q gi|254780752|r 473 AMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTV 552 (817) Q Consensus 473 ~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~ 552 (817) -+..|-||||.+.-.-+++.|.-.+ .+.|..-.++...|. ....-.++++.|+.+|++-++=.+..++|.++ T Consensus 52 qr~sPaSTfKI~~sLigld~Gvl~d---~~~~v~~wd~~~~~f-----~~W~qd~dl~~amk~Svvwy~q~iar~ig~ek 123 (254) T COG2602 52 QRFSPASTFKIALSLIGLDAGVLSD---EDTPVLLWDGKIRWF-----ESWNQDQDLTSAMKNSVVWYYQEIARAIGREK 123 (254) T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCC---CCCEEEEECCCCCCC-----HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8668468999999974114573135---876555107775634-----11215588899999987889999999876899 Q ss_pred EEEEECCCCCCCCC-CCCCCCC-CCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 52110135565556-7665634-451000037767432201574403544666764102443013358532355666666 Q gi|254780752|r 553 VADYAENFGIYDKM-LPVLPMS-LGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTW 630 (817) Q Consensus 553 ~~~~~~~~Gi~~~~-~~~~s~a-lG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~ 630 (817) +..+++++|.+... ......- .++--+||+|-+.-.--++++-. T Consensus 124 ~~aylk~l~YGN~dis~~~~~Wl~~sLkIS~~EQv~fL~rL~~~~L---------------------------------- 169 (254) T COG2602 124 MAAYLKQLGYGNQDISGNPGFWLESSLKISPKEQVIFLRRLAQNEL---------------------------------- 169 (254) T ss_pred HHHHHHHHCCCCHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCC---------------------------------- T ss_conf 9999887522631105899811136652277999999999974669---------------------------------- Q ss_pred CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEEEECCCCCCCC--EEEEEEC----CCEEEEEE Q ss_conf 65545546755435358999999999999987348043210599604676046789702--2798456----98799999 Q gi|254780752|r 631 NGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSYRD--TWFIGYT----PTLVVGVY 704 (817) Q Consensus 631 ~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~~~~D--~WfvG~t----p~~~~~vW 704 (817) -+|..+-.++.+||-- ....++.+-|||||.-.... .|||||. ..|+.+.- T Consensus 170 --------------PFs~~a~~~v~~~m~~---------~~~~~~~l~GKTG~~~~~~~~~GWfVG~v~~~~~~y~FA~n 226 (254) T COG2602 170 --------------PFSAKAQDLVKAIMIL---------ERGPNWELHGKTGTGIVNTKNLGWFVGWVETNENKYVFATN 226 (254) T ss_pred --------------CCCHHHHHHHHHHHHH---------HCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEE T ss_conf --------------9887899999877701---------30897699840444653788750599999968937999996 Q ss_pred E Q ss_conf 8 Q gi|254780752|r 705 V 705 (817) Q Consensus 705 v 705 (817) + T Consensus 227 l 227 (254) T COG2602 227 L 227 (254) T ss_pred E T ss_conf 1 No 20 >PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional Probab=97.58 E-value=0.00019 Score=48.43 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=75.8 Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEE-C Q ss_conf 116640656666117872132344433200123356653100001278874024665445652378803785266641-2 Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPEN-Y 519 (817) Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N-~ 519 (817) .+.|+||..||+||.=- --+.+++|.|+-|.++...+||.+......+ .+..... ....+ + T Consensus 41 ~sail~D~~TG~VLy~k------------n~d~~~~pAS~TKlMTalv~le~~~~ld~~v-----~v~~~~~-~~~~~~~ 102 (308) T PRK11669 41 GSAMVVDLNTNKVIYSS------------NPDLVVPIASITKLMTAMVVLDAKLPLDEKL-----KVDISQT-PEMKGVY 102 (308) T ss_pred EEEEEEECCCCCEEEEE------------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE-----EEEHHHH-HHCCCCC T ss_conf 08999999999690015------------8299848789999999999981789988769-----9767762-0006874 Q ss_pred CCCCCC-HHH----HHHHHHHHCCHHHHHHHHHCCC--CEEE----EEECCCCCCCCCCCCCCCCCCC-CEEHHHHHHHH Q ss_conf 765442-256----6666653044022588762597--2352----1101355655567665634451-00003776743 Q gi|254780752|r 520 SKNFSG-AST----LRFGLEKSRNLMTVRLAHNMGM--TVVA----DYAENFGIYDKMLPVLPMSLGA-GETTVLRMVSA 587 (817) Q Consensus 520 ~~~~~G-~it----l~~Al~~S~N~~~v~l~~~~G~--~~~~----~~~~~~Gi~~~~~~~~s~alG~-~~vtpl~la~a 587 (817) .+-..| .++ ++-+|..|-|-.++-|++.++- +.|+ +.++++|+.+-..-+ +.+|-. .-.|.-|||.. T Consensus 103 s~l~~G~~~tv~dLl~~~li~S~NdAA~aLAe~i~Gs~~~Fv~~MN~kA~eLGm~~T~F~n-p~GL~~~n~sTA~DLA~L 181 (308) T PRK11669 103 SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRYVE-PTGLSVHNVSTARDLTKL 181 (308) T ss_pred CCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCCCEECHHHHHHH T ss_conf 4334798888999999998746529999999970767999999999999982999888868-999898880389999999 Q ss_pred HHH Q ss_conf 220 Q gi|254780752|r 588 YAV 590 (817) Q Consensus 588 ya~ 590 (817) ... T Consensus 182 ~~~ 184 (308) T PRK11669 182 LIA 184 (308) T ss_pred HHH T ss_conf 999 No 21 >pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase. Probab=97.35 E-value=0.0036 Score=39.91 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=77.4 Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCC--EEEEEC-CC--C Q ss_conf 166406566661178721323444332001233566531000012788740---2-4665445652--378803-78--5 Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDA--PIEVVS-RG--K 512 (817) Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~--p~~~~~-~~--~ 512 (817) +.++||..||+|+.-- + .+.+++|.|+-|.++...+||. | +.+.+.+.-+ ...... .+ . T Consensus 14 saiv~D~~tg~iL~~k-------n-----~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~~~~~~~~~~~~s~ 81 (241) T pfam00768 14 SAILVDYNTGKVLYEK-------N-----ADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALGNFRGSSN 81 (241) T ss_pred EEEEEECCCCCEEEEE-------C-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCCE T ss_conf 9999999999790006-------9-----099817789999999999999756289885444210188998637888734 Q ss_pred EEEEEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCCC--CCEEH Q ss_conf 2666412765442256666----66530440225887625972------352110135565556766563445--10000 Q gi|254780752|r 513 IWKPENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSLG--AGETT 580 (817) Q Consensus 513 ~~~p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~alG--~~~vt 580 (817) .|- +-...+++++ .|..|-|-.++-|++.+|-. .+-+.|+++|+.+-...++ .+|- ..-.| T Consensus 82 ~~l------~~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~T~F~np-~GL~~~~~~sT 154 (241) T pfam00768 82 MFL------KPGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKNTRFVNP-TGLDNHGQYSS 154 (241) T ss_pred EEE------CCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC-CCCCCCCCEEC T ss_conf 653------48999889999999987564599999999845829999999999999819999866668-77778886667 Q ss_pred HHHHHHHHHHCC Q ss_conf 377674322015 Q gi|254780752|r 581 VLRMVSAYAVFA 592 (817) Q Consensus 581 pl~la~aya~~A 592 (817) ..|||.....+. T Consensus 155 A~Dla~l~~~~~ 166 (241) T pfam00768 155 ARDLAILARALI 166 (241) T ss_pred HHHHHHHHHHHH T ss_conf 999999999998 No 22 >PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional Probab=96.02 E-value=0.0046 Score=39.17 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=78.2 Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHCC-CCCCCCCCCCEEEEECCCCEEEE Q ss_conf 116640656666117872132344433200123356653100001278---87402-46654456523788037852666 Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA---ALDSG-YTPASVIMDAPIEVVSRGKIWKP 516 (817) Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~---Ale~G-~tp~t~~~D~p~~~~~~~~~~~p 516 (817) -+.|+||..||+||.= + -.+.+++|.|+-|.++... ||++| +.+++.+. +.. ..|.. T Consensus 40 ~sail~D~~TG~VLy~-------K-----n~d~~~~pAS~TKlMTa~lv~eai~~g~i~ld~~v~-----vs~--~a~~~ 100 (400) T PRK10001 40 RAWILMDYASGKVLAE-------G-----NADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVT-----VGK--DAWAT 100 (400) T ss_pred EEEEEEECCCCCCHHH-------C-----CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE-----ECH--HHHHH T ss_conf 1899999999959453-------0-----939984877999999999999998659998786477-----248--99852 Q ss_pred EEC-----CCCC---CCHHHHHH----HHHHHCCHHHHHHHHHCCCC--E----EEEEECCCCCCCCCCCCCCCCCCC-- Q ss_conf 412-----7654---42256666----66530440225887625972--3----521101355655567665634451-- Q gi|254780752|r 517 ENY-----SKNF---SGASTLRF----GLEKSRNLMTVRLAHNMGMT--V----VADYAENFGIYDKMLPVLPMSLGA-- 576 (817) Q Consensus 517 ~N~-----~~~~---~G~itl~~----Al~~S~N~~~v~l~~~~G~~--~----~~~~~~~~Gi~~~~~~~~s~alG~-- 576 (817) .|. +.-+ ...+|+++ .+..|-|=.++-|++.++-. . +-+.|+++|+.+-...+++ +|-. T Consensus 101 ~~~~~~g~S~~~l~~g~~~tv~dLL~~lli~SaNDAA~aLAe~i~Gs~~~Fv~~MN~kA~~LG~~nT~F~np~-GL~~~~ 179 (400) T PRK10001 101 GNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVH-GLDAPG 179 (400) T ss_pred CCCCCCCCCEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCC-CCCCCC T ss_conf 4765568742442379898999999998774425999999972355689999999999998289875435664-366754 Q ss_pred CEEHHHHHHHHHHHCC Q ss_conf 0000377674322015 Q gi|254780752|r 577 GETTVLRMVSAYAVFA 592 (817) Q Consensus 577 ~~vtpl~la~aya~~A 592 (817) .-.|+-+||..-..+. T Consensus 180 ~~sTA~Dla~la~~l~ 195 (400) T PRK10001 180 QFSTARDMALLGKALI 195 (400) T ss_pred CCCCHHHHHHHHHHHH T ss_conf 4455999999999886 No 23 >COG2367 PenP Beta-lactamase class A [Defense mechanisms] Probab=95.95 E-value=0.13 Score=29.50 Aligned_cols=109 Identities=22% Similarity=0.210 Sum_probs=65.0 Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEECCCCEE Q ss_conf 531166406566661178721323444332001233566531000012788740---2-466544565237880378526 Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVVSRGKIW 514 (817) Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~~~~~~~ 514 (817) ...++.+.|-.||...+.-| ....+-.||||-.++++.|++ | +.+.+.+.=..-....+.+.- T Consensus 63 ~~~~~~v~d~~t~~~~~~n~-------------~~~fp~aSt~K~~v~~a~l~~v~~G~~~l~e~~ti~~d~~~~~s~~~ 129 (329) T COG2367 63 GRVGVYVLDVDTGELIAING-------------DERFPAASTIKLPVLAALLEQVDAGRIGLDERLTITKDDRVGGSGVL 129 (329) T ss_pred CEEEEEEEECCCCCEEEECC-------------CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCHH T ss_conf 52679999668873131157-------------75212578999999999999714575575542010433322576111 Q ss_pred EEEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC-EEEEEECCCCCCC Q ss_conf 66412765442256666----66530440225887625972-3521101355655 Q gi|254780752|r 515 KPENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT-VVADYAENFGIYD 564 (817) Q Consensus 515 ~p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~-~~~~~~~~~Gi~~ 564 (817) .-..+.+ .+++++ .+..|-|+..=-+..++|.. .+..++++.|+.. T Consensus 130 ~~~~~g~----~~t~~el~~~mi~~SDNtAtnmLi~rlg~~~~v~~~l~~~Gl~~ 180 (329) T COG2367 130 QYLVGGG----GSTLRELLTKMITASDNTATNMLIERLGGPKALNEWLRSIGLPN 180 (329) T ss_pred EEECCCC----CEEHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCC T ss_conf 1315788----35799999652221402888999999358199999999818832 No 24 >PRK00971 glutaminase; Provisional Probab=95.49 E-value=0.16 Score=28.88 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=67.2 Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999 Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817) Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817) +.++|..+||.+-+++||+|+. |. ..+||++++++..+. T Consensus 197 Si~vt~~dLA~~~a~LAn~G~~--P~---------------------------------------tg~~vls~~~~r~v~ 235 (308) T PRK00971 197 ALEMSCIDLARAGLFLANDGVS--PH---------------------------------------TGERVVSPSQARQVN 235 (308) T ss_pred CCCCCHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCCCCCHHHHHHHH T ss_conf 7321299999999999768968--99---------------------------------------889538999999999 Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 99999873-4804321059960467604678970227984569-879999982668982789864421217999999 Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAF 730 (817) Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~ 730 (817) .+|...-- ..+|.-+...|.|. |+|-+= =.++..| ++.++||- | + -+..|.++++-..-+. T Consensus 236 s~M~tcGmYd~SGefa~~VGlPa--KSGVgG-----gIlavvPg~~gIav~S----P-~--LD~~GNSv~G~~~le~ 298 (308) T PRK00971 236 ALMATCGMYDASGEFAYRVGLPA--KSGVGG-----GILAVVPGEMAIAVWS----P-G--LDAKGNSLAGTAALER 298 (308) T ss_pred HHHHHCCCCCCCCCHHHEECCCC--CCCCCC-----EEEEEECCCCEEEEEC----C-C--CCCCCCCHHHHHHHHH T ss_conf 99987688655331254068710--367665-----3899937971899988----8-8--6888886999999999 No 25 >PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional Probab=95.48 E-value=0.0059 Score=38.43 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=77.2 Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHCC-CCCCCCCCCCEEEEECCCCEEEEE Q ss_conf 16640656666117872132344433200123356653100001278---87402-466544565237880378526664 Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA---ALDSG-YTPASVIMDAPIEVVSRGKIWKPE 517 (817) Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~---Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~ 517 (817) |.++||..||+||.= ++ ...+++|.|+-|.++... ||++| +++.+.+. +.. ..|... T Consensus 48 sailiD~~TG~VLy~-------kN-----ad~~~~pAS~TKlMT~~lv~eai~~g~l~~~d~v~-----vs~--~a~~~~ 108 (403) T PRK10793 48 SYILIDYNSGKVLAE-------QN-----ADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVT-----VGN--DAWATG 108 (403) T ss_pred EEEEEECCCCCCHHH-------CC-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE-----ECH--HHHHHC T ss_conf 999999999949131-------09-----49995877999999999999999759999888599-----658--998514 Q ss_pred E---CCC-----CCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCCCC--C Q ss_conf 1---276-----5442256666----66530440225887625972------3521101355655567665634451--0 Q gi|254780752|r 518 N---YSK-----NFSGASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSLGA--G 577 (817) Q Consensus 518 N---~~~-----~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~alG~--~ 577 (817) | .++ +-...+|+++ .+..|-|=.++-|++.++-. .+-+.|+.+|+.+-...+++ +|-. . T Consensus 109 ~~~~~g~s~~~l~~G~~~tv~dLl~gl~i~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kA~eLG~~nT~F~np~-GL~~~~~ 187 (403) T PRK10793 109 NPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH-GLDADGQ 187 (403) T ss_pred CCCCCCCCEEEECCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCC-CCCCCCC T ss_conf 876678742541589899999999975652435999999975069899999999999998589874544787-7767676 Q ss_pred EEHHHHHHHHHHHCC Q ss_conf 000377674322015 Q gi|254780752|r 578 ETTVLRMVSAYAVFA 592 (817) Q Consensus 578 ~vtpl~la~aya~~A 592 (817) -.|+-+||..-..+. T Consensus 188 ~tTA~Dla~la~~l~ 202 (403) T PRK10793 188 YSSARDMALIGQALI 202 (403) T ss_pred CCCHHHHHHHHHHHH T ss_conf 558899999999998 No 26 >PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional Probab=95.17 E-value=0.012 Score=36.46 Aligned_cols=136 Identities=20% Similarity=0.206 Sum_probs=77.2 Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHCC-CCCCCCCCCCEEEEECCCCEEEEE Q ss_conf 16640656666117872132344433200123356653100001278---87402-466544565237880378526664 Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA---ALDSG-YTPASVIMDAPIEVVSRGKIWKPE 517 (817) Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~---Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~ 517 (817) +.|+||..||+||.= ++ .+.+++|.|+-|.++... ++++| +++.+.+.=++-.+...+..+. T Consensus 40 sailiD~~TG~vLy~-------kN-----~d~~~~pAS~TKlMT~~v~~e~i~~g~l~~d~~v~vs~~a~~~~~~~~~-- 105 (390) T PRK11397 40 SWVLMDYTTGQILTA-------GN-----EHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFV-- 105 (390) T ss_pred EEEEEECCCCCEEEE-------EC-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCC-- T ss_conf 999999999969201-------29-----2998487799999999999999973999978659963878741487657-- Q ss_pred ECCC---CCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC--E----EEEEECCCCCCCCCCCCCCCCCCC--CEEHHH Q ss_conf 1276---5442256666----66530440225887625972--3----521101355655567665634451--000037 Q gi|254780752|r 518 NYSK---NFSGASTLRF----GLEKSRNLMTVRLAHNMGMT--V----VADYAENFGIYDKMLPVLPMSLGA--GETTVL 582 (817) Q Consensus 518 N~~~---~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~--~----~~~~~~~~Gi~~~~~~~~s~alG~--~~vtpl 582 (817) +.+. +-...+|+++ .+..|-|-.++-|++.++-. . +-+.|+++|+.+-...+ +.+|-. .-.|+. T Consensus 106 g~s~~~l~~Ge~~tv~dLl~~lli~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kAk~lG~~nT~F~n-p~GL~~~~~~tTA~ 184 (390) T PRK11397 106 GSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFET-VHGLDAPGQHSSAY 184 (390) T ss_pred CCCEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCCCCCCCHH T ss_conf 87224215898999999999988744239999999752799999999999999985898746854-43467888888999 Q ss_pred HHHHHHHHCC Q ss_conf 7674322015 Q gi|254780752|r 583 RMVSAYAVFA 592 (817) Q Consensus 583 ~la~aya~~A 592 (817) +||..-..+. T Consensus 185 Dla~la~~~i 194 (390) T PRK11397 185 DLAVLSRAII 194 (390) T ss_pred HHHHHHHHHH T ss_conf 9999999974 No 27 >pfam04960 Glutaminase Glutaminase. This family of enzymes deaminates glutamine to glutamate EC:3.5.1.2. Probab=94.43 E-value=0.17 Score=28.68 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=67.1 Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999 Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817) Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817) +.++|..+||.+-+++||+|+- |. ..+||++++++..+. T Consensus 175 Si~~t~~dLA~~aatLAn~G~~--P~---------------------------------------tg~~v~~~~~~~~v~ 213 (286) T pfam04960 175 ALEMSCEDLAVMGATLANGGVN--PI---------------------------------------TGERVVSPDVARQIL 213 (286) T ss_pred CHHCCHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCEECCHHHHHHHH T ss_conf 7044299999999999768968--99---------------------------------------889626999999999 Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHH-HHHHHH Q ss_conf 99999873-4804321059960467604678970227984569-8799999826689827898644212179-999999 Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAP-IFNAFM 731 (817) Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~p-iw~~~m 731 (817) .+|...-- ..+|.-+...|.| +|+|-+= =.++-.| ...++||- | + -+..|.++++- +.+.+. T Consensus 214 s~M~tcGmYd~SG~fa~~VGlP--aKSGVgG-----gIlavvPg~~gIav~S----P-~--LD~~GNSv~G~~~~~~ls 278 (286) T pfam04960 214 ALMLTCGMYDASGDFAYRVGLP--AKSGVGG-----GILAVVPGVMGIAVWS----P-A--LDEAGNSVAGVAALEKLS 278 (286) T ss_pred HHHHHCCCCCCCCHHHHHCCCC--CCCCCCC-----EEEEEECCCCEEEEEC----C-C--CCCCCCCHHHHHHHHHHH T ss_conf 9998768865500046516871--0467675-----3899937961799988----8-7--688888699999999999 No 28 >COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane] Probab=94.11 E-value=0.043 Score=32.76 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=79.1 Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEEE Q ss_conf 116640656666117872132344433200123356653100001278874---02-46654456523788037852666 Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWKP 516 (817) Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~p 516 (817) .+.++||..||+||.=- -.+.+++|-|.-|.++....|| .| +++.+.+.=+......++ + T Consensus 39 ~~aiviD~~sGkVLy~k------------n~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~~~----~ 102 (389) T COG1686 39 KAAIVIDADSGKVLYSK------------NADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAKGG----G 102 (389) T ss_pred CEEEEEECCCCCEEECC------------CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCC----C T ss_conf 43899988998472132------------8898878509999999999998764268884553335675663178----7 Q ss_pred EECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCC--C----EEEEEECCCCCCCCCCCC---CCCCCCCCEEHHHH Q ss_conf 412765442256666----6653044022588762597--2----352110135565556766---56344510000377 Q gi|254780752|r 517 ENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGM--T----VVADYAENFGIYDKMLPV---LPMSLGAGETTVLR 583 (817) Q Consensus 517 ~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~--~----~~~~~~~~~Gi~~~~~~~---~s~alG~~~vtpl~ 583 (817) .+-.=+-...+++++ .+.+|-|-.++-|++.+|- + .+-..++++|+.+-...+ |+-- |. -.|.-+ T Consensus 103 S~~~l~~G~~~tv~dLl~gllv~SaNDAA~aLAe~~~Gs~~~Fv~~MN~kA~~LGm~nT~F~npsGL~~~-~~-~tTArD 180 (389) T COG1686 103 SKMFLKPGETVTVRDLLKGLLVQSANDAAVALAEHLAGSEDAFVAKMNAKAKELGMKNTHFVNPSGLDNP-GQ-VTTARD 180 (389) T ss_pred CCCEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC-CC-CCCHHH T ss_conf 6511346988789999999887445499999998717989999999999999858988876188788988-87-466989 Q ss_pred HHHHHHHCCC Q ss_conf 6743220157 Q gi|254780752|r 584 MVSAYAVFAN 593 (817) Q Consensus 584 la~aya~~AN 593 (817) ||.....+-. T Consensus 181 la~l~~~l~~ 190 (389) T COG1686 181 LALLARALIR 190 (389) T ss_pred HHHHHHHHHH T ss_conf 9999999988 No 29 >PRK12356 glutaminase; Reviewed Probab=94.08 E-value=0.19 Score=28.44 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=66.7 Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999 Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817) Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817) +.++|..+||.+.+++||+|+. |. ..+||++++++..+. T Consensus 200 Si~vt~~dLA~~~atLAn~G~~--P~---------------------------------------tg~~v~~~~~~r~v~ 238 (319) T PRK12356 200 STLVTARDLATMGATLAAGGVN--PL---------------------------------------TGKRVVDADNVPYIL 238 (319) T ss_pred CCCEEHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCCCCCHHHHHHHH T ss_conf 7420299999999999758968--99---------------------------------------889538889999999 Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99999873-4804321059960467604678970227984569-879999982668982789864421217999999999 Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKE 733 (817) Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~ 733 (817) .+|...-- ..+|.-+...| +-+|.|-+= =.++-.| .+.++||- | + -+..|.++++-.+-+.+.. T Consensus 239 s~M~tcGmYD~SG~fa~~VG--lPaKSGVgG-----gIlavvPg~~gIav~S----P-~--LD~~GNSvrG~~~le~Ls~ 304 (319) T PRK12356 239 AEMTMEGLYERSGDWAYTVG--LPGKSGVGG-----GILAVVPGKMGIAAFS----P-P--LDEAGNSVKGQLAVASVAR 304 (319) T ss_pred HHHHHCCCCCCCCCHHHEEC--CCCCCCCCC-----EEEEEECCCCEEEEEC----C-C--CCCCCCCHHHHHHHHHHHH T ss_conf 99986688535121020377--702357665-----3799937961799988----8-8--7888886999999999999 No 30 >PRK12357 glutaminase; Reviewed Probab=93.90 E-value=0.22 Score=28.09 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=63.0 Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999 Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817) Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817) +.++|..+||.+.+++||+|+. | ...+||++++++..+. T Consensus 205 Si~~t~~dLA~~~a~LAN~G~~--P---------------------------------------~t~~~v~~~~~~r~v~ 243 (326) T PRK12357 205 SIEINTEDIALIGLILAHDGYH--P---------------------------------------IRKEQVIPKEVARLTK 243 (326) T ss_pred CHHCCHHHHHHHHHHHHCCCCC--C---------------------------------------CCCCEECCHHHHHHHH T ss_conf 7052099999999999768979--9---------------------------------------9889755999999999 Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECCC-----------EEEEEEEECCCCCCCCCCCCCCCCC Q ss_conf 99999873-48043210599604676046789702279845698-----------7999998266898278986442121 Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPT-----------LVVGVYVGYDIPAPLNNHATGSTLT 723 (817) Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp~-----------~~~~vWvG~D~~~~~~~~~~G~~~a 723 (817) .+|...-- ..+|.-+...|.| +|+|-+= =.++..|. +.++||- | + -+..|.+++ T Consensus 244 s~M~tcGmYD~SGefa~~VGlP--aKSGVgG-----gIlavvPg~~~~~~~~~~~mgIav~S----P-~--LD~~GNSv~ 309 (326) T PRK12357 244 ALMLTCGMYNASGKFAAFIGLP--AKSGVSG-----GIMALVPSKSRKDLPFQDGCGIGIYG----P-A--IDEYGNSLP 309 (326) T ss_pred HHHHHCCCCCCCHHHHHHCCCC--CCCCCCC-----EEEEEECCCCCCCCCCCCCEEEEEEC----C-C--CCCCCCCHH T ss_conf 9986458865400268863883--0357666-----26999577555565566750699988----8-7--688888699 Q ss_pred HHHH Q ss_conf 7999 Q gi|254780752|r 724 APIF 727 (817) Q Consensus 724 ~piw 727 (817) +-.. T Consensus 310 G~~~ 313 (326) T PRK12357 310 GIML 313 (326) T ss_pred HHHH T ss_conf 9999 No 31 >PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional Probab=85.24 E-value=0.57 Score=25.27 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=34.9 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCE-------------EEEEE-CCCCCCCCCCCCCCCCCCCC-----EEHHHHHHHHH Q ss_conf 6666665304402258876259723-------------52110-13556555676656344510-----00037767432 Q gi|254780752|r 528 TLRFGLEKSRNLMTVRLAHNMGMTV-------------VADYA-ENFGIYDKMLPVLPMSLGAG-----ETTVLRMVSAY 588 (817) Q Consensus 528 tl~~Al~~S~N~~~v~l~~~~G~~~-------------~~~~~-~~~Gi~~~~~~~~s~alG~~-----~vtpl~la~ay 588 (817) -++..+..|.|..|=.|+..+|... +.+++ +++|+... .+.+.=|++ -+||-+|+..- T Consensus 298 iv~~mnk~SdN~~AE~Ll~tlg~~~~~~pgs~~~g~~av~~~L~~~~Gid~~---~~~i~DGSGLSR~NriSp~~l~~lL 374 (477) T PRK11113 298 LLKIMLKKSDNMIADTLFRTIGHQRFNVPGSFRNGSDAVRQILRQQAGIDLG---NTIIADGSGLSRHNLIAPATMMQVL 374 (477) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC---CCEEECCCCCCCCCCCCHHHHHHHH T ss_conf 9999985384699999999999983489998899999999999984098977---7777458888824472999999999 Q ss_pred HHCC Q ss_conf 2015 Q gi|254780752|r 589 AVFA 592 (817) Q Consensus 589 a~~A 592 (817) ..++ T Consensus 375 ~~~~ 378 (477) T PRK11113 375 QYIA 378 (477) T ss_pred HHHH T ss_conf 9998 No 32 >COG2066 GlsA Glutaminase [Amino acid transport and metabolism] Probab=83.36 E-value=3.1 Score=20.37 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=75.7 Q ss_pred EEEECCCCCCCCCCCCCCCCCCC------CEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 21101355655567665634451------000037767432201574403544666764102443013358532355666 Q gi|254780752|r 554 ADYAENFGIYDKMLPVLPMSLGA------GETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNY 627 (817) Q Consensus 554 ~~~~~~~Gi~~~~~~~~s~alG~------~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~ 627 (817) ..+++.+|.-. .+.-.+|.. .++|..|||.+..++||+|+. |+ T Consensus 173 A~~l~~~G~l~---~dv~~al~~Y~~qCai~~~~~dLA~~g~~LA~~G~~--p~-------------------------- 221 (309) T COG2066 173 AYLLKSFGNLE---HDVEEALDVYFHQCAIEMNCVDLARLGLFLANGGVN--PL-------------------------- 221 (309) T ss_pred HHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CC-------------------------- T ss_conf 99998579667---879999999998887883399999988998669908--88-------------------------- Q ss_pred CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHH-HHCCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEE Q ss_conf 6666554554675543535899999999999998-734804321059960467604678970227984569-87999998 Q gi|254780752|r 628 DTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGV-IKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYV 705 (817) Q Consensus 628 ~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~v-v~~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWv 705 (817) ..++|++++.|..+..+|-.- .-.+.|.-+...|.| ||.|-.-. .++..| ...++||- T Consensus 222 -------------tge~v~~~~~ar~i~alM~TcGmYd~sG~fa~rVGlP--~KSGVgGG-----I~AvvPg~~gIav~s 281 (309) T COG2066 222 -------------TGERVVPADQARQINALMLTCGMYDASGEFAYRVGLP--AKSGVGGG-----IMAVVPGEMGIAVWS 281 (309) T ss_pred -------------CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC--CCCCCCCE-----EEEEECCCCEEEEEC T ss_conf -------------7885777788899999998703623300147630885--33676660-----589806873789877 Q ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 26689827898644212179999999999 Q gi|254780752|r 706 GYDIPAPLNNHATGSTLTAPIFNAFMKEA 734 (817) Q Consensus 706 G~D~~~~~~~~~~G~~~a~piw~~~m~~~ 734 (817) | .-+..|.++++-..-+.+..- T Consensus 282 ------P-~Ld~~GNSv~G~~~le~Ls~~ 303 (309) T COG2066 282 ------P-ALDEAGNSVAGIAALEQLSQQ 303 (309) T ss_pred ------C-CCCCCCCCHHHHHHHHHHHHH T ss_conf ------7-668778835999999999998 No 33 >pfam05088 Bac_GDH Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia. Probab=80.46 E-value=4 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=7.8 Q ss_pred HCCCCCCCCCCH Q ss_conf 014267433109 Q gi|254780752|r 173 NEIFFGFNSYGI 184 (817) Q Consensus 173 N~v~~G~~~yGv 184 (817) |-+|||-..|.+ T Consensus 153 hFtFLGyReYdl 164 (1526) T pfam05088 153 HFTFLGYREYDL 164 (1526) T ss_pred CEEEEEEEEEEE T ss_conf 979820489984 No 34 >pfam06089 Asparaginase_II L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source. Probab=77.64 E-value=2.7 Score=20.82 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=34.5 Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 531166406566661178721323444332001233566531000012788740246 Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYT 495 (817) Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~t 495 (817) -.|.+|++| .+|+|+...|..+... =|-|++|||=..+.++.|.. T Consensus 14 H~g~~vv~d-~~G~~~~~~Gd~~~~~-----------~pRSa~Kp~QAl~~~~sGa~ 58 (325) T pfam06089 14 HRGHAVVVD-ADGRVLASAGDPEAPT-----------FPRSAAKPFQALPLLESGAA 58 (325) T ss_pred EEEEEEEEC-CCCCEEEECCCCCCCE-----------ECHHHHHHHHHHHHHHCCCC T ss_conf 889999992-9999898617999834-----------13344369999999986840 No 35 >pfam00144 Beta-lactamase Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. Probab=73.28 E-value=5.5 Score=18.74 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=43.5 Q ss_pred CCCCCCEEEE--ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCCCEEEEECCCCEEEEEECCC Q ss_conf 5666611787--213234443320012335665310000127887---402-4665445652378803785266641276 Q gi|254780752|r 448 PRTGRILATI--GGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMDAPIEVVSRGKIWKPENYSK 521 (817) Q Consensus 448 ~~TG~IlA~v--Gg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D~p~~~~~~~~~~~p~N~~~ 521 (817) .+.|+|+--- |-.|..... ---.+.....||.-|+|+.++++ |+| +.+.+.+.+ |-|+. .. T Consensus 22 ~~~g~~~~~~~~G~~d~~~~~-p~~~dT~f~iaSvsK~~ta~~i~~Lve~G~l~Ld~~v~~-----------ylP~~-~~ 88 (327) T pfam00144 22 TRDGKVVVDRGGGVADLEGGR-PVTADTLFRIASVTKTFTAAAVLALVERGKLDLDDPVSK-----------YLPEF-AG 88 (327) T ss_pred EECCEEEEEEEEEEECCCCCC-CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHH-----------HCCCC-CC T ss_conf 999999999868884477798-899998587301279999999999997599886643254-----------28666-77 Q ss_pred CCCCHHHHHHHHHHHCCHHH Q ss_conf 54422566666653044022 Q gi|254780752|r 522 NFSGASTLRFGLEKSRNLMT 541 (817) Q Consensus 522 ~~~G~itl~~Al~~S~N~~~ 541 (817) .....||+|+-|.+++=.+. T Consensus 89 ~~~~~iTi~~LLsHtSGl~~ 108 (327) T pfam00144 89 SGKGGVTLRDLLTHTSGLPP 108 (327) T ss_pred CCCCCCCHHHHHHCCCCCCC T ss_conf 87678659999446579997 No 36 >TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se.. Probab=69.65 E-value=4.2 Score=19.52 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=42.4 Q ss_pred CCCCCEEEEEEECCCCCCCC--------------------CCCCHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHC Q ss_conf 03027125444015764332--------------------111114667899----888766654201112568887530 Q gi|254780752|r 199 LTIEEAAYLAALPKGPSNYD--------------------PFRKNKAAIARR----NWVIDRMEENGYISQEQALVAKQK 254 (817) Q Consensus 199 Ltl~EaA~LAgi~~~Ps~y~--------------------P~~np~~a~~Rr----~~VL~~M~~~g~It~~e~~~a~~~ 254 (817) .+.-||+-=-.|+++=..|. =+.+||-|..=- ..||++++.+|-||+||++-|..- T Consensus 101 V~~vEAsAFm~lTPalV~YRa~Gl~R~~~G~v~~~~R~~AKVSRpEVA~~Fm~PAP~~~L~~L~a~G~it~eeAeLA~~v 180 (449) T TIGR02814 101 VRIVEASAFMQLTPALVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAAILQKLLAEGRITEEEAELAAEV 180 (449) T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEECCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHC T ss_conf 96799872020368888885615721689847774556785166799986215234899999853387687899998417 Q ss_pred CCCCCCCCCCCCC Q ss_conf 1112445432223 Q gi|254780752|r 255 PLKITIKQRRSHL 267 (817) Q Consensus 255 ~i~~~~~~~~~~~ 267 (817) |+...+--...+- T Consensus 181 PvAdDi~vEADSG 193 (449) T TIGR02814 181 PVADDICVEADSG 193 (449) T ss_pred CCCCCEEEECCCC T ss_conf 7303603752683 No 37 >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Probab=67.92 E-value=6.8 Score=18.13 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 888766654201112568887530111244543 Q gi|254780752|r 231 NWVIDRMEENGYISQEQALVAKQKPLKITIKQR 263 (817) Q Consensus 231 ~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~ 263 (817) ..+|++++++|.||++|++.|...|+...+... T Consensus 152 ~~il~~L~~~G~iT~eqA~lA~~vPmAdDItvE 184 (418) T cd04742 152 ERILKKLLAEGKITEEQAELARRVPVADDITVE 184 (418) T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE T ss_conf 999999998699889999988279853236773 No 38 >TIGR01696 deoB phosphopentomutase; InterPro: IPR010045 This entry describes bacterial phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway of nucleotide synthesis. It catalyses a phosphotransfer on ribose and deoxyribose, converting D-ribose 1-phosphate to D-ribose 5-phosphate, and 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate . ; GO: 0000287 magnesium ion binding, 0008973 phosphopentomutase activity, 0009117 nucleotide metabolic process, 0043094 metabolic compound salvage, 0005737 cytoplasm. Probab=62.86 E-value=4.2 Score=19.54 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=27.6 Q ss_pred HHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHH Q ss_conf 110012433125732898524888989999999 Q gi|254780752|r 281 LIDRYGEKALYEDGLSIRTSLDPQLQLYARKAL 313 (817) Q Consensus 281 l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai 313 (817) +++.+|++...+|-+-|||+-|+-+|-+|.+.+ T Consensus 150 IlD~lG~~~M~TG~lI~YTSADsVlQIAaHEe~ 182 (404) T TIGR01696 150 ILDELGEEHMKTGKLIVYTSADSVLQIAAHEEV 182 (404) T ss_pred HHHHHCHHHHHCCCEEEEECCCHHHHHHHCCCC T ss_conf 876504233205873687256413434310134 No 39 >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Probab=61.68 E-value=5.5 Score=18.75 Aligned_cols=194 Identities=19% Similarity=0.210 Sum_probs=90.6 Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHH-HHHH-HHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCC Q ss_conf 6406566661178721323444332001233566531000-0127-8874024665445652378803785266641276 Q gi|254780752|r 444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKP-IVYA-AALDSGYTPASVIMDAPIEVVSRGKIWKPENYSK 521 (817) Q Consensus 444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP-~vy~-~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N~~~ 521 (817) |.+|-+-|+++|+||...-.++.+-|+..+.-+| |+=.. |.-. ..+..+ ..........+.|. |=.. T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~-~~~~~r~~~QmvFQ---------dp~~ 378 (539) T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGG-ELRRLRRRIQMVFQ---------DPYS 378 (539) T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCEEEEECCCCCCCCC-HHHHHHHHEEEEEE---------CCCC T ss_conf 2457638878999889999989999999487788-88449992765565523-14552420379996---------7623 Q ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 54422566666653044022588762597235211013556555676656344510000377674322015744035446 Q gi|254780752|r 522 NFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPS 601 (817) Q Consensus 522 ~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~ 601 (817) .-.-.+|+.+.+...+-+....- ..--...+.+.++..|+..+...-++--|-.++--=+-+|.|-+ .+|. T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~-~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa--------~~P~ 449 (539) T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS-GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA--------LEPK 449 (539) T ss_pred CCCCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHH--------CCCC T ss_conf 36700069999874786506651-67899999999987199978971386003852567899999985--------4998 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC-CCEEHHCCCCCCEEEE Q ss_conf 667641024430133585323556666666554554675543535899999999999998734-8043210599604676 Q gi|254780752|r 602 FIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH-GTATGKVRLNRPVAGK 680 (817) Q Consensus 602 ~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~-GTg~~a~~~~~~iaGK 680 (817) +| +.+++.-.+|+.+...+.++|.+--+. |...-. | T Consensus 450 ll----------------------------------i~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lf------I--- 486 (539) T COG1123 450 LL----------------------------------ILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF------I--- 486 (539) T ss_pred EE----------------------------------EECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE------E--- T ss_conf 99----------------------------------9648743227899999999999999974988999------9--- Q ss_pred ECCCCCCCCEEEEEECCCEEEEEEEE Q ss_conf 04678970227984569879999982 Q gi|254780752|r 681 TGTTSSYRDTWFIGYTPTLVVGVYVG 706 (817) Q Consensus 681 TGTt~~~~D~WfvG~tp~~~~~vWvG 706 (817) ..|.+||-+..+-++...-| T Consensus 487 ------SHDl~vV~~i~drv~vm~~G 506 (539) T COG1123 487 ------SHDLAVVRYIADRVAVMYDG 506 (539) T ss_pred ------ECCHHHHHHHCCEEEEEECC T ss_conf ------58789998638668999788 No 40 >COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane] Probab=59.26 E-value=11 Score=16.86 Aligned_cols=62 Identities=24% Similarity=0.184 Sum_probs=39.7 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCEE------------EE-EECCCCCCCCCCCCCCCCCCCC-----EEHHHHHHHHHH Q ss_conf 66666653044022588762597235------------21-1013556555676656344510-----000377674322 Q gi|254780752|r 528 TLRFGLEKSRNLMTVRLAHNMGMTVV------------AD-YAENFGIYDKMLPVLPMSLGAG-----ETTVLRMVSAYA 589 (817) Q Consensus 528 tl~~Al~~S~N~~~v~l~~~~G~~~~------------~~-~~~~~Gi~~~~~~~~s~alG~~-----~vtpl~la~aya 589 (817) -|.+-+.+|-|..|=-|+..+|.... .. ++++.||+.. .+.+.=|++ -+||-.|..... T Consensus 298 lLk~m~k~SnN~~Ae~L~~~ig~~~~~~gs~~~~~~~v~~~l~~~~GId~~---~~vL~DGSGLSr~Nritpr~l~~~Lq 374 (470) T COG2027 298 LLKDMNKYSDNLMAEALFRAIGGAIKRPGSVSAAADAVRQILLQRAGIDLA---GLVLADGSGLSRDNRITPRTLVQLLQ 374 (470) T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC---CEEEECCCCCCHHCCCCHHHHHHHHH T ss_conf 999998615089999999984534478742667789999999987398856---64874189887110229899999999 Q ss_pred HCC Q ss_conf 015 Q gi|254780752|r 590 VFA 592 (817) Q Consensus 590 ~~A 592 (817) .++ T Consensus 375 ~~~ 377 (470) T COG2027 375 AAA 377 (470) T ss_pred HHH T ss_conf 987 No 41 >pfam06774 consensus Probab=57.52 E-value=8.7 Score=17.40 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=44.8 Q ss_pred CEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 604641799697888545433214611338737999999999986320478867761147999888 Q gi|254780752|r 70 NRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAK 135 (817) Q Consensus 70 ~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaK 135 (817) .|..-.+-+.+..+.|.+=---=.+|+++.+||+.+.-..++.-.+.. =||-..||++| T Consensus 15 e~~L~~L~d~sA~lWNevNY~Rrq~ff~~~~vd~~~t~~~~y~~YK~~-------Lgs~taQqV~r 73 (97) T pfam06774 15 ERDLRELADASAKLWNEVNYLRRQQFFEGKLVDFGRTEKRVYEEYKSV-------LGSVTVQQVAR 73 (97) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHH T ss_conf 999999999999999899999999976569976333099999999977-------11777999999 No 42 >pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family. Probab=54.69 E-value=12 Score=16.39 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=38.1 Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCC------------EEEEEECCCCCCCCCCCCCCCCCCCC-----EEHHHHHHHHHH Q ss_conf 5666666530440225887625972------------35211013556555676656344510-----000377674322 Q gi|254780752|r 527 STLRFGLEKSRNLMTVRLAHNMGMT------------VVADYAENFGIYDKMLPVLPMSLGAG-----ETTVLRMVSAYA 589 (817) Q Consensus 527 itl~~Al~~S~N~~~v~l~~~~G~~------------~~~~~~~~~Gi~~~~~~~~s~alG~~-----~vtpl~la~aya 589 (817) --++..+..|.|..|=.|+..+|.. .+.++++++|+.... +-+.=|++ -+||-+|+..-. T Consensus 233 ~iv~~m~k~S~N~~AE~L~~~lg~~~~~~~s~~~g~~~v~~~L~~~gi~~~~---~~l~DGSGLSr~n~is~~~l~~lL~ 309 (383) T pfam02113 233 DLLKKMMKKSDNLIAESLFREIGVAIKRPGSFEAGADAVRSILSTAGIDTAN---LVLRDGSGLSRHNLVTAATLAQLLQ 309 (383) T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC---CEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 9999997418569999999999986279988899999999999974999556---4784489887334549999999999 Q ss_pred HCC Q ss_conf 015 Q gi|254780752|r 590 VFA 592 (817) Q Consensus 590 ~~A 592 (817) .+. T Consensus 310 ~~~ 312 (383) T pfam02113 310 AIA 312 (383) T ss_pred HHH T ss_conf 998 No 43 >PRK12361 hypothetical protein; Provisional Probab=54.13 E-value=14 Score=16.05 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=62.4 Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC Q ss_conf 26743310999999873542344030271254440157643321111146678998887666542011125688875301 Q gi|254780752|r 176 FFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKP 255 (817) Q Consensus 176 ~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~ 255 (817) -||+|--..-.||.-.-.++ ++|..|. |. ..+-.+.-.+.-+||-.-|.+|.+.|+++..+.. T Consensus 182 AlG~gRSv~v~aAyll~~~~--~~~~~~~--~~-------~i~~~r~ta~ln~~q~~~l~~~~~~~~~~~~~~a------ 244 (546) T PRK12361 182 ALGRGRSVLVLAAYLLCKDK--QLSVEEV--LQ-------QIKQIRKTARLNKWQLKALEKMLDQGKINIHKRA------ 244 (546) T ss_pred CCCCCHHHHHHHHHHHHCCC--CCCHHHH--HH-------HHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCE------ T ss_conf 88896159999999973388--8999999--99-------9999987524789999999999847935513755------ Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEE-EECCCHHHHHHHHHHHHHH Q ss_conf 112445432223457156799885311001243312573289-8524888989999999987 Q gi|254780752|r 256 LKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSI-RTSLDPQLQLYARKALQNG 316 (817) Q Consensus 256 i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~Gl~I-~TTiD~~lQ~~Ae~ai~~~ 316 (817) -+-.+| -+..+..+-..++++++|..+|. |+| .||-+..-.+.|++|+.++ T Consensus 245 -~li~NP-vsG~g~~~~~~~~i~~~L~~~~~--------l~v~~t~~~~~a~~LArqAv~~G 296 (546) T PRK12361 245 -WLIANP-VSGGGKWQQYGEQIIQELKAYFD--------LTVKLTTPDISANTLAKQARKAG 296 (546) T ss_pred -EEEECC-CCCCCCHHHHHHHHHHHHHHHEE--------EEEEECCCCCCHHHHHHHHHHCC T ss_conf -999836-77898768899999997353176--------89996688889999999999749 No 44 >PRK11289 ampC beta-lactamase; Provisional Probab=53.49 E-value=14 Score=15.98 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=7.0 Q ss_pred CCCCCCCCCHHHHH Q ss_conf 33566531000012 Q gi|254780752|r 473 AMRQPGSCFKPIVY 486 (817) Q Consensus 473 ~~rqpGSt~KP~vy 486 (817) ...+.||.=|+|+- T Consensus 83 T~F~iaSisK~fTa 96 (387) T PRK11289 83 TLFELGSVSKTFTA 96 (387) T ss_pred CEEECCCCHHHHHH T ss_conf 87852110599999 No 45 >pfam00901 Orbi_VP5 Orbivirus outer capsid protein VP5. cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion. Probab=50.93 E-value=16 Score=15.72 Aligned_cols=92 Identities=24% Similarity=0.284 Sum_probs=48.2 Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----------CCHHHHHHHHHHHHC----- Q ss_conf 9969788854543321461133873799999999998632047886776-----------114799988887708----- Q gi|254780752|r 77 QIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEG-----------ASTITQQVAKNFLLT----- 140 (817) Q Consensus 77 ~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qG-----------gSTITQQlaKn~~l~----- 140 (817) +.+-+-+.+|+.+---++-|+--| +...|++=+.|-...-.+.+|| |+.|-|-++=|++.. T Consensus 3 sR~Gk~v~~aLTS~takkiystiG---kaaeR~aeSEIGsaaIdGvvQGsv~S~ltGesyGesvKQAVilNVlG~~d~~p 79 (508) T pfam00901 3 SRFGKKVGNALTSDTAKRIYSTIG---KAAERVAESEIGSAAIDGVVQGSVHSALTGESYGESVKQAVILNVLGAGDEPP 79 (508) T ss_pred HHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 446667655540436899999999---99999998566389885777646666652762588999999998624689998 Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHCH--HHHHHHH Q ss_conf -----883299999999999999866079--9999997 Q gi|254780752|r 141 -----SNQTMDRKIKEILLSFRLEKAYDK--EKILEFY 171 (817) Q Consensus 141 -----~e~t~~RK~~E~~lA~~lE~~~sK--~eILe~Y 171 (817) .|+.+.+|++|+=...+=|....| ++|++-+ T Consensus 80 DPLSPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~kf 117 (508) T pfam00901 80 DPLSPGEQGLQRKLKELEREQKEEEVREKHNKEIIEKF 117 (508) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99886479999999999998750699998779999999 No 46 >TIGR02415 23BDH acetoin reductases; InterPro: IPR014007 One member of this family, as characterised in Klebsiella terrigena , is able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also capable of irreversible reduction of diacetyl with NADH to acetoin. There has been a reuctance to classify the enzyme as either 1.1.1.4 from EC, which is (R,R)-butanediol dehydrogenase, or 1.1.1.5 from EC, which is acetoin dehydrogenase without a specified stereochemistry . Another member of this family, from Corynebacterium glutamicum (Brevibacterium flavum), is called L-2,3-butanediol dehydrogenase . This enzyme is a homotetramer in the family of short chain dehydrogenases (IPR002198 from INTERPRO). . Probab=49.95 E-value=16 Score=15.67 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=11.8 Q ss_pred CCCEEEEEECCCCCC-CCCCCCCCCC Q ss_conf 972352110135565-5567665634 Q gi|254780752|r 549 GMTVVADYAENFGIY-DKMLPVLPMS 573 (817) Q Consensus 549 G~~~~~~~~~~~Gi~-~~~~~~~s~a 573 (817) |++.-++-++++|-. .+....-|+| T Consensus 117 GIQAA~~~Fkk~~~~tGkIINAaSiA 142 (258) T TIGR02415 117 GIQAAARQFKKQGHGTGKIINAASIA 142 (258) T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 88999987787168987115776575 No 47 >pfam05279 Asp-B-Hydro_N Aspartyl beta-hydroxylase N-terminal region. This family includes the N-terminal regions of the junctin, junctate and aspartyl beta-hydroxylase proteins. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins. Probab=49.40 E-value=17 Score=15.57 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=16.3 Q ss_pred HHHHHCCCCCHHHHHCCCCCCCEEEECCCCC Q ss_conf 9987046989788512477887799907894 Q gi|254780752|r 31 IAKISQNLPDYAALNSYSPAVTTRIHAGNGA 61 (817) Q Consensus 31 ~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~ 61 (817) +..++-+|-++.++-. ..-|||+||. T Consensus 28 VaVVwFdlVDYeeVlg-----kLgiYDaDGD 53 (232) T pfam05279 28 VAVVWFDLVDYEEVLG-----KLGVYDADGD 53 (232) T ss_pred HHEEEEEECCHHHHHH-----HHCEECCCCC T ss_conf 3045544003898754-----4310026888 No 48 >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process. Probab=49.13 E-value=13 Score=16.22 Aligned_cols=41 Identities=29% Similarity=0.573 Sum_probs=19.4 Q ss_pred EEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC Q ss_conf 845698799999826689827898644212179999999999748983006 Q gi|254780752|r 693 IGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRF 743 (817) Q Consensus 693 vG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f 743 (817) .||-..+=-|| ||.|.|--. +.-=..+..+++++-+|.+.| T Consensus 705 ~~Y~~giGpGV---YDIHSPRvP-------S~eE~~~~~~~aL~~~p~~~l 745 (778) T TIGR01371 705 FGYPNGIGPGV---YDIHSPRVP-------SVEEMADLIEKALQVLPAERL 745 (778) T ss_pred CCCCCCCCCCE---EECCCCCCC-------HHHHHHHHHHHHHHHCCHHHC T ss_conf 36432348721---322688867-------389999999999974005508 No 49 >PRK06199 ornithine cyclodeaminase; Validated Probab=44.62 E-value=20 Score=15.09 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.7 Q ss_pred EECCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 52255531166406566661178721 Q gi|254780752|r 434 RQIPKVQGGLIAMDPRTGRILATIGG 459 (817) Q Consensus 434 ~~~p~~q~a~V~id~~TG~IlA~vGg 459 (817) ...|..++-++..|+.||+.+|+..| T Consensus 106 ~GLP~~~a~iiL~D~~TG~PlAimdg 131 (379) T PRK06199 106 KGLPRSILTFVLNDADTGAPLAIMSA 131 (379) T ss_pred CCCCCCEEEEEEECCCCCCEEEEECC T ss_conf 59866428999962777965788763 No 50 >PRK06823 ornithine cyclodeaminase; Validated Probab=44.10 E-value=18 Score=15.35 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.9 Q ss_pred EECCCCCCEEEEECCCCCCCEEEE Q ss_conf 522555311664065666611787 Q gi|254780752|r 434 RQIPKVQGGLIAMDPRTGRILATI 457 (817) Q Consensus 434 ~~~p~~q~a~V~id~~TG~IlA~v 457 (817) ...|..||-+++.|+.||+.+|+. T Consensus 78 ~glP~~~g~i~L~d~~TG~p~A~l 101 (315) T PRK06823 78 QGLPSNQGLMLAFSAKTGEPQALL 101 (315) T ss_pred CCCCCCCEEEEEEECCCCCEEEEE T ss_conf 698764369999988999757998 No 51 >TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other.. Probab=42.99 E-value=12 Score=16.53 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=7.4 Q ss_pred EEECCCHHHHHHHHHHHHH Q ss_conf 9852488898999999998 Q gi|254780752|r 297 IRTSLDPQLQLYARKALQN 315 (817) Q Consensus 297 I~TTiD~~lQ~~Ae~ai~~ 315 (817) .+..||..-+.-.-.++.+ T Consensus 80 ~~~~~NC~~~~T~y~~~~~ 98 (383) T TIGR02928 80 STVYINCQILDTSYQVLVE 98 (383) T ss_pred EEEEECCCCCCCHHHHHHH T ss_conf 8999778546846999999 No 52 >pfam06491 DUF1094 Protein of unknown function (DUF1094). This family consists of several hypothetical bacterial proteins of unknown function. Probab=41.66 E-value=22 Score=14.79 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=26.4 Q ss_pred CCCCCCCEEEECCCCCEEEEEECCCEEEECHHHCCHHHHHHH Q ss_conf 247788779990789496666125604641799697888545 Q gi|254780752|r 46 SYSPAVTTRIHAGNGALMAEYARENRLFLPIQIIPSHVKYAF 87 (817) Q Consensus 46 ~~~~~~~t~iyd~dG~~i~~~~~~~R~~v~~~~ip~~l~~A~ 87 (817) .+.|+.||.-+-+||+++.-+-+..=+=-+.++|.++|++|| T Consensus 53 ~~pPSSPs~ALfKdGelvh~ieRh~IEGr~ae~Ia~~L~~af 94 (96) T pfam06491 53 GYPPSSPSMALFKDGELVHMIERHHIEGREAEEIAENLTEAF 94 (96) T ss_pred CCCCCCCCEEEEECCEEEEEEEHHHCCCCCHHHHHHHHHHHH T ss_conf 989899501456489889987512007989999999999985 No 53 >PRK06046 alanine dehydrogenase; Validated Probab=41.66 E-value=20 Score=15.07 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=21.9 Q ss_pred EECCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 52255531166406566661178721 Q gi|254780752|r 434 RQIPKVQGGLIAMDPRTGRILATIGG 459 (817) Q Consensus 434 ~~~p~~q~a~V~id~~TG~IlA~vGg 459 (817) ...|..+|-+++.|+.||+.+|++.| T Consensus 80 ~glP~~~g~i~L~d~~TG~p~Ai~d~ 105 (326) T PRK06046 80 RGLPTVMALIILNSPETGAPLALMDG 105 (326) T ss_pred CCCCCEEEEEEEEECCCCCEEEEECC T ss_conf 38874689999998899977999856 No 54 >pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina. Probab=41.14 E-value=21 Score=14.91 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.5 Q ss_pred ECCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 2255531166406566661178721 Q gi|254780752|r 435 QIPKVQGGLIAMDPRTGRILATIGG 459 (817) Q Consensus 435 ~~p~~q~a~V~id~~TG~IlA~vGg 459 (817) ..|..+|-+++.|+.||+.+|++-| T Consensus 81 glP~~~g~i~L~d~~TG~p~Aild~ 105 (312) T pfam02423 81 GLPTVTATGVLNDPDTGYPLALMDA 105 (312) T ss_pred CCCCEEEEEEEEECCCCCEEEEECC T ss_conf 8872358999998899977999825 No 55 >TIGR01009 rpsC_bact ribosomal protein S3; InterPro: IPR005704 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes the bacterial type of ribosomal protein S3 and also and many chloroplast forms. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit. Probab=39.62 E-value=20 Score=14.98 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=10.4 Q ss_pred HCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 277588999760899531789998 Q gi|254780752|r 758 TGMLSKKGDPDTIIEAFKPGTGPA 781 (817) Q Consensus 758 sG~la~~~~~~~~~e~f~~gt~P~ 781 (817) ||-|++. +=++.|||.+|.+|= T Consensus 160 SGRLgGA--EIAR~E~y~EGRvPL 181 (217) T TIGR01009 160 SGRLGGA--EIARTEWYKEGRVPL 181 (217) T ss_pred EECCCCH--HHCCCCEEEECCCCC T ss_conf 6105742--112221043279973 No 56 >PRK07340 ornithine cyclodeaminase; Validated Probab=39.00 E-value=23 Score=14.59 Aligned_cols=26 Identities=35% Similarity=0.680 Sum_probs=21.9 Q ss_pred EECCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 52255531166406566661178721 Q gi|254780752|r 434 RQIPKVQGGLIAMDPRTGRILATIGG 459 (817) Q Consensus 434 ~~~p~~q~a~V~id~~TG~IlA~vGg 459 (817) ...|.+||.++++|+.||+.+|+.-| T Consensus 76 ~glp~~~g~v~L~d~~TG~p~aild~ 101 (304) T PRK07340 76 RGLPTIQGQVVVADAATGEPLFALDG 101 (304) T ss_pred CCCCCEEEEEEEEECCCCCEEEEECC T ss_conf 69885259999999899988999816 No 57 >PRK13748 putative mercuric reductase; Provisional Probab=38.58 E-value=24 Score=14.48 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=6.5 Q ss_pred CCCCCCCCCHHHHHH Q ss_conf 426743310999999 Q gi|254780752|r 175 IFFGFNSYGIASAAL 189 (817) Q Consensus 175 v~~G~~~yGv~aAA~ 189 (817) +=.|.|.=|..||-+ T Consensus 102 iVIG~GpaG~~AA~~ 116 (561) T PRK13748 102 AVIGSGGAAMAAALK 116 (561) T ss_pred EEECCCHHHHHHHHH T ss_conf 998958899999999 No 58 >PRK06141 ornithine cyclodeaminase; Validated Probab=38.51 E-value=24 Score=14.54 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=21.4 Q ss_pred ECCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 2255531166406566661178721 Q gi|254780752|r 435 QIPKVQGGLIAMDPRTGRILATIGG 459 (817) Q Consensus 435 ~~p~~q~a~V~id~~TG~IlA~vGg 459 (817) ..|..+|-+++.|+.||+.+|+.-| T Consensus 77 glP~~~g~i~L~d~~TG~p~a~~d~ 101 (313) T PRK06141 77 GLPGLHSTYLLFDGRTGEPLALVDG 101 (313) T ss_pred CCCCEEEEEEEEECCCCCEEEEECC T ss_conf 9875358999998899978999837 No 59 >TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972 This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes. The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . . Probab=37.84 E-value=6.3 Score=18.35 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=43.1 Q ss_pred HHHHHHHCCHHHHHHH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCE------EHHHHHHHHHHHCCC Q ss_conf 6666530440225887-625972352110135565556766563445100------003776743220157 Q gi|254780752|r 530 RFGLEKSRNLMTVRLA-HNMGMTVVADYAENFGIYDKMLPVLPMSLGAGE------TTVLRMVSAYAVFAN 593 (817) Q Consensus 530 ~~Al~~S~N~~~v~l~-~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~------vtpl~la~aya~~AN 593 (817) .++|+++.|...++|+ +++.+..+.--..+| |.+--...+++||++.+ +.=|+|...|.+|++ T Consensus 69 ~~~la~~KN~~Y~~LlD~~lTp~d~LPGi~~l-L~~Lk~~~ikialASaSkNA~~vLekL~L~~~Fd~IvD 138 (190) T TIGR01990 69 KEELAERKNDYYVELLDKELTPEDVLPGIKSL-LEDLKKKNIKIALASASKNAPTVLEKLELRDYFDAIVD 138 (190) T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHH-HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEC T ss_conf 99999987799999975068986604018999-99999848948873023448999998214220422645 No 60 >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Probab=37.84 E-value=14 Score=16.00 Aligned_cols=14 Identities=50% Similarity=0.821 Sum_probs=5.5 Q ss_pred HHHHHHHCCCHHHC Q ss_conf 99998735423440 Q gi|254780752|r 186 SAALTYFNKSVSEL 199 (817) Q Consensus 186 aAA~~YF~K~~~dL 199 (817) .-+.-|.+|-+.|| T Consensus 360 kt~leyW~klVadL 373 (1053) T COG5101 360 KTALEYWNKLVADL 373 (1053) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 61 >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; InterPro: IPR012794 Members of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription, 0046278 protocatechuate metabolic process. Probab=37.09 E-value=5.5 Score=18.73 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=37.7 Q ss_pred HHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 987354234403027125444015764332111114667899888766654201112568 Q gi|254780752|r 189 LTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQA 248 (817) Q Consensus 189 ~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~ 248 (817) -.-||.+-..|||+|+|=..||++ |-.|| .|--+.+.||.+.+.. T Consensus 15 i~aF~~~~~~ltl~~vA~~TGL~R-------------AaARR--~LLTL~~LGY~~~Dg~ 59 (252) T TIGR02431 15 IEAFGEERPRLTLTDVAEATGLTR-------------AAARR--FLLTLVELGYVESDGR 59 (252) T ss_pred HHHHCCCCCCCCHHHHHHHHCCCC-------------HHHHH--HHHHHHHHCCEECCCC T ss_conf 997310378989899998758994-------------79888--9984656230421798 No 62 >COG3462 Predicted membrane protein [Function unknown] Probab=36.31 E-value=18 Score=15.27 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=7.8 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 97899999999999999 Q gi|254780752|r 1 MYYRIVSFIGYFFGFAT 17 (817) Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (817) |=+++-+|++.++.++. T Consensus 1 mdk~ven~~w~liglia 17 (117) T COG3462 1 MDKKVENFAWLLIGLIA 17 (117) T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 91799999999999999 No 63 >pfam05096 Glu_cyclase_2 Glutamine cyclotransferase. This family of enzymes EC:2.3.2.5 catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes. Probab=35.85 E-value=23 Score=14.62 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=12.2 Q ss_pred CEEEEECCCCCCCEEEE Q ss_conf 11664065666611787 Q gi|254780752|r 441 GGLIAMDPRTGRILATI 457 (817) Q Consensus 441 ~a~V~id~~TG~IlA~v 457 (817) --+|+|||.||.|.+++ T Consensus 195 d~Iv~Idp~tG~V~~~i 211 (264) T pfam05096 195 NRIARIQPDTGKVVAWI 211 (264) T ss_pred CEEEEEECCCCEEEEEE T ss_conf 45999979997599999 No 64 >PRK08618 ornithine cyclodeaminase; Validated Probab=35.56 E-value=27 Score=14.17 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=21.2 Q ss_pred ECCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 2255531166406566661178721 Q gi|254780752|r 435 QIPKVQGGLIAMDPRTGRILATIGG 459 (817) Q Consensus 435 ~~p~~q~a~V~id~~TG~IlA~vGg 459 (817) ..|..+|-+++.|+.||+.+|++-| T Consensus 79 glp~~~g~i~L~d~~TG~p~aild~ 103 (325) T PRK08618 79 GKPTIPGTVILSDFETGEVLAILDG 103 (325) T ss_pred CCCCEEEEEEEEECCCCCEEEEECC T ss_conf 8886468999998898978999827 No 65 >TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component; InterPro: IPR011786 Sulphite reductase (NADPH) catalyzes a six electron reduction of sulphite to sulphide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulphur protein.; GO: 0004783 sulfite reductase (NADPH) activity, 0050661 NADP binding, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process, 0009337 sulfite reductase complex (NADPH). Probab=35.38 E-value=12 Score=16.59 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=15.6 Q ss_pred HHHHCCCCEEEEEE-CCCCCC-CCCCC Q ss_conf 87625972352110-135565-55676 Q gi|254780752|r 544 LAHNMGMTVVADYA-ENFGIY-DKMLP 568 (817) Q Consensus 544 l~~~~G~~~~~~~~-~~~Gi~-~~~~~ 568 (817) +.+++|++.+.+=. +++|+. ++..| T Consensus 300 Ti~~~GLd~~~~Eve~RaG~~l~P~RP 326 (550) T TIGR02041 300 TIDRMGLDTFKAEVERRAGIKLEPARP 326 (550) T ss_pred CHHHCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 333137378999998725886466555 No 66 >PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional Probab=35.30 E-value=27 Score=14.15 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=31.6 Q ss_pred CHHHHHHHHHH-HHHHHHHHCHHHHHHHHHH--------CCCCCC-CCCCHHHHHHHHHCCCHHHCCCCC Q ss_conf 29999999999-9999866079999999720--------142674-331099999987354234403027 Q gi|254780752|r 144 TMDRKIKEILL-SFRLEKAYDKEKILEFYLN--------EIFFGF-NSYGIASAALTYFNKSVSELTIEE 203 (817) Q Consensus 144 t~~RK~~E~~l-A~~lE~~~sK~eILe~YLN--------~v~~G~-~~yGv~aAA~~YF~K~~~dLtl~E 203 (817) .+.|=++|++- ++.+++ .+|..++| ..|+|- |+|. +.||+.||+|+..+....- T Consensus 72 ~i~~if~eI~s~s~~~q~-----~~~~~~~~~~~~~~~kVayLGp~GtfS-~~Aa~~~~~~~~~~~~~~~ 135 (386) T PRK10622 72 YITRLFQLIIEDSVLTQQ-----ALLQQHLNKTNPHSARIAFLGPKGSYS-HLAARQYAARHFEQFIESG 135 (386) T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHCCCCCCCC T ss_conf 999999999999999789-----999865400356676599878997569-9999998764244333478 No 67 >PRK05362 phosphopentomutase; Provisional Probab=34.55 E-value=5.9 Score=18.52 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=27.2 Q ss_pred HHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHH Q ss_conf 311001243312573289852488898999999 Q gi|254780752|r 280 QLIDRYGEKALYEDGLSIRTSLDPQLQLYARKA 312 (817) Q Consensus 280 ~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~a 312 (817) ++++.||++.+.+|..-|||+-|+-+|-+|.+. T Consensus 138 ~ii~~lG~eh~~tg~pIvYTSaDSVfQIAAhe~ 170 (393) T PRK05362 138 EIIDELGEEHMKTGKPIVYTSADSVFQIAAHEE 170 (393) T ss_pred HHHHHHHHHHHHCCCCEEEECCCCEEEEEECCC T ss_conf 999999898762089769852773489730302 No 68 >TIGR01974 NDH_I_L proton-translocating NADH-quinone oxidoreductase, chain L; InterPro: IPR003945 NADH-plastoquinone oxidoreductase chain 5 is part of the NADH-ubiquinone oxidoreductase (complex I), which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane :NADH + ubiquinone = NAD(+) + ubiquinol ; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport. Probab=33.21 E-value=19 Score=15.16 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=7.4 Q ss_pred CCCCCCCHHH--HHHHHH Q ss_conf 5665310000--127887 Q gi|254780752|r 475 RQPGSCFKPI--VYAAAL 490 (817) Q Consensus 475 rqpGSt~KP~--vy~~Al 490 (817) |--|--.|++ +|..-+ T Consensus 375 rkMGgL~K~~P~Ty~~f~ 392 (691) T TIGR01974 375 RKMGGLRKKLPVTYITFL 392 (691) T ss_pred HHHCCCHHHHHHHHHHHH T ss_conf 351320132389999999 No 69 >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Probab=32.63 E-value=30 Score=13.87 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=80.4 Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCEEEEECCCCEEEEEECCCC Q ss_conf 640656666117872132344433200123356653100001278874024665-4456523788037852666412765 Q gi|254780752|r 444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPA-SVIMDAPIEVVSRGKIWKPENYSKN 522 (817) Q Consensus 444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~-t~~~D~p~~~~~~~~~~~p~N~~~~ 522 (817) |.++-.-|++++++|-....++.+-|+.-+.-+| ++=...+-.--+... .+. ....+.. ..+++..+. T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~-~~~~~~~~~VQ---------mVFQDp~~S 94 (252) T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPK-KRAKAFYRPVQ---------MVFQDPYSS 94 (252) T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCEEEECCCCCCCC-CCCHHHCCCEE---------EEECCCCCC T ss_conf 2599648978999848989888999999565678-886289888405766-53033304506---------995187224 Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 44225666666530440225887625972352110135565556766563445100003776743220157440354466 Q gi|254780752|r 523 FSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSF 602 (817) Q Consensus 523 ~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~ 602 (817) .+-..|+++.|....++--..- .-.+..+.++.+|+........+.-|-.++.-=+-+|.|-. .+|.+ T Consensus 95 LnP~~tv~~~l~Epl~~~~~~~----~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~--------~~Pkl 162 (252) T COG1124 95 LNPRRTVGRILSEPLRPHGLSK----SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI--------PEPKL 162 (252) T ss_pred CCCCHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHHHHC--------CCCCE T ss_conf 6841019899742430377537----89999999998499989985394212816899999999863--------68887 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH Q ss_conf 6764102443013358532355666666655455467554353589999999999999873 Q gi|254780752|r 603 IDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK 663 (817) Q Consensus 603 i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~ 663 (817) + +.++....+|..+-..+.++|....+ T Consensus 163 L----------------------------------IlDEptSaLD~siQa~IlnlL~~l~~ 189 (252) T COG1124 163 L----------------------------------ILDEPTSALDVSVQAQILNLLLELKK 189 (252) T ss_pred E----------------------------------EECCCHHHHCHHHHHHHHHHHHHHHH T ss_conf 9----------------------------------95382344158899999999999998 No 70 >PRK11267 biopolymer transport protein ExbD; Provisional Probab=32.52 E-value=30 Score=13.85 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=49.2 Q ss_pred HHHCCCCCHHHHHCCCCCCCEEE-ECCCCCEEEEEECCCEEEECHHHCCHHHHHHHHHHHCCCCC--CCCCCCHHHHHHH Q ss_conf 87046989788512477887799-90789496666125604641799697888545433214611--3387379999999 Q gi|254780752|r 33 KISQNLPDYAALNSYSPAVTTRI-HAGNGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFY--YHSGVDIFGIMRA 109 (817) Q Consensus 33 ~~~~~lP~~~~l~~~~~~~~t~i-yd~dG~~i~~~~~~~R~~v~~~~ip~~l~~A~iA~ED~rFy--~H~GvD~~gi~RA 109 (817) .+.-+||....-...+++.+..| .++||++.- +...++++++...+..+.-...|..++ -+..+.+..+++. T Consensus 44 ~i~v~LP~~~~~~~~~~~~~i~I~I~~dg~i~~-----~~~~v~~~~L~~~l~~~~~~~~~~~v~i~aD~~~~y~~vv~V 118 (141) T PRK11267 44 DVKVNLPASTSTPQPRPEKPVYLSVKADNSMFI-----GNDPVTDETMITALDALTEGKKDTTIFFRADKTVDYETLMKV 118 (141) T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEE-----CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH T ss_conf 742438876566778988767999916984687-----780357999999999998328996299975899868899999 Q ss_pred HHHHHH Q ss_conf 999863 Q gi|254780752|r 110 VLHNIR 115 (817) Q Consensus 110 ~~~ni~ 115 (817) + ..++ T Consensus 119 m-d~~~ 123 (141) T PRK11267 119 M-DTLH 123 (141) T ss_pred H-HHHH T ss_conf 9-9999 No 71 >COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism] Probab=32.51 E-value=15 Score=15.94 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=28.0 Q ss_pred HHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHH Q ss_conf 3110012433125732898524888989999999 Q gi|254780752|r 280 QLIDRYGEKALYEDGLSIRTSLDPQLQLYARKAL 313 (817) Q Consensus 280 ~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai 313 (817) ++++.+|++-..+|-+.|||+-|+-+|-+|.+.. T Consensus 138 ~ii~~lGe~h~~Tg~~IvYTSaDsV~QIaahE~~ 171 (397) T COG1015 138 EIIKDLGEEHMKTGKPIVYTSADSVFQIAAHEEV 171 (397) T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHEEEECCC T ss_conf 9999864887740782899557734422430220 No 72 >pfam09653 consensus Probab=31.76 E-value=29 Score=13.91 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=28.3 Q ss_pred HHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 110012433125732898524888989999999987676 Q gi|254780752|r 281 LIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLIN 319 (817) Q Consensus 281 l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~ 319 (817) |..+|..+. -..|+||+.+-++.++.+|++-..++|.. T Consensus 12 lL~~F~l~S-~~eGIKvH~dA~p~~i~Aa~RLf~KGLit 49 (75) T pfam09653 12 LLALFPLDS-TQEGIKVHSDAAPELIAAAKRLFDKGLIT 49 (75) T ss_pred HHHCCCCCC-HHCCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 998189711-00364013669999999999999858821 No 73 >PTZ00318 NADH dehydrogenase; Provisional Probab=31.55 E-value=31 Score=13.75 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=46.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH------HHC Q ss_conf 1111466789988876665420111--25688875301112445432223457156799885311001243------312 Q gi|254780752|r 220 FRKNKAAIARRNWVIDRMEENGYIS--QEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEK------ALY 291 (817) Q Consensus 220 ~~np~~a~~Rr~~VL~~M~~~g~It--~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~------~l~ 291 (817) +++.+.|.+=|+.+|.++.+...-+ .+|....+..-+ .-..+.....|.-+.|++++.+.+.+... .|. T Consensus 146 LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVV---VGGGpTGVElAgeLad~~~~~~~~~~~~l~~~~~V~Li 222 (514) T PTZ00318 146 LREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVV---VGGGPTGVEFAANLAEFFRDDVKNINTSLVPFCKVTVL 222 (514) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEE---ECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEE T ss_conf 788999999999999999985078899789324202789---77776203289999999998876428123010037886 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 573289852488898999999998 Q gi|254780752|r 292 EDGLSIRTSLDPQLQLYARKALQN 315 (817) Q Consensus 292 ~~Gl~I~TTiD~~lQ~~Ae~ai~~ 315 (817) ..| +|--++|..++++|++.+++ T Consensus 223 ea~-~iLp~f~~~ls~~a~~~L~~ 245 (514) T PTZ00318 223 EAG-EVFGSFDLRVRRWGKRRLDA 245 (514) T ss_pred ECH-HHHHCCCHHHHHHHHHHHHH T ss_conf 050-01210898999999999987 No 74 >PRK03642 hypothetical protein; Provisional Probab=31.46 E-value=31 Score=13.77 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=16.6 Q ss_pred EHHHHHHHHHHHCCCCCEE Q ss_conf 0037767432201574403 Q gi|254780752|r 579 TTVLRMVSAYAVFANGGKQ 597 (817) Q Consensus 579 vtpl~la~aya~~AN~G~~ 597 (817) -|.-+++.-...+.|+|.+ T Consensus 302 STa~D~arF~qMlLn~G~~ 320 (432) T PRK03642 302 SNTDDMAVLMQVMLNGGGY 320 (432) T ss_pred CCHHHHHHHHHHHHHCCCC T ss_conf 7899999999999708972 No 75 >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Probab=31.27 E-value=20 Score=14.95 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=21.1 Q ss_pred CCCCCEECCHHHHHHHHHHHHHHHH-CCCE Q ss_conf 7554353589999999999999873-4804 Q gi|254780752|r 639 IDKREQVLDPMTAYQITSMLEGVIK-HGTA 667 (817) Q Consensus 639 ~~~~~~v~s~~~a~~~~~~L~~vv~-~GTg 667 (817) .+++..++|..+-..+.++|+.-.+ .|++ T Consensus 177 ADEPTTALDvtvQaqIl~ll~~l~~e~~~s 206 (316) T COG0444 177 ADEPTTALDVTVQAQILDLLKELQREKGTA 206 (316) T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCE T ss_conf 679860451999999999999999854978 No 76 >pfam09693 Phage_XkdX Phage uncharacterized protein (Phage_XkdX). This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes. Probab=31.17 E-value=27 Score=14.12 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=14.2 Q ss_pred HHHHHHHHCCCHHHHHHHHHC Q ss_conf 766654201112568887530 Q gi|254780752|r 234 IDRMEENGYISQEQALVAKQK 254 (817) Q Consensus 234 L~~M~~~g~It~~e~~~a~~~ 254 (817) +.+.+..|+||++||.+-..+ T Consensus 18 v~~fV~~~~IT~eey~eItG~ 38 (40) T pfam09693 18 VKRFVDVGWITPEEYKEITGE 38 (40) T ss_pred HHHHHHCCCCCHHHHHHHHCC T ss_conf 997400254689999998578 No 77 >pfam05120 GvpG Gas vesicle protein G. These proteins are involved in the formation of gas vesicles. Probab=30.46 E-value=32 Score=13.63 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 6678998887666542011125688875 Q gi|254780752|r 225 AAIARRNWVIDRMEENGYISQEQALVAK 252 (817) Q Consensus 225 ~a~~Rr~~VL~~M~~~g~It~~e~~~a~ 252 (817) .+..++=.-|.++++.|-|++++|+.-- T Consensus 31 ~~i~~~L~~L~~~le~GEI~Eeefd~~E 58 (80) T pfam05120 31 ENLRAELAELQRQLEAGEISEEEFDRQE 58 (80) T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 9999999999999885899989998789 No 78 >TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins. Probab=29.48 E-value=24 Score=14.54 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=10.4 Q ss_pred HHHHHCCCCCCCCCCCH Q ss_conf 54332146113387379 Q gi|254780752|r 87 FVSAEDKNFYYHSGVDI 103 (817) Q Consensus 87 ~iA~ED~rFy~H~GvD~ 103 (817) ++-.+|..||=|+.++= T Consensus 84 VvQ~~DN~~YL~~~f~g 100 (232) T TIGR03064 84 VVQGKDNDYYLNKNYEG 100 (232) T ss_pred EEECCCCCHHHCCCCCC T ss_conf 58789862775378898 No 79 >PRK11512 DNA-binding transcriptional repressor MarR; Provisional Probab=28.92 E-value=5.5 Score=18.74 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=47.8 Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCHH--HCCCCCEEEEEEECCCCCCCCCCCCHHHHH------HHHHHHHHHHHHHH Q ss_conf 9720142674331099999987354234--403027125444015764332111114667------89988876665420 Q gi|254780752|r 170 FYLNEIFFGFNSYGIASAALTYFNKSVS--ELTIEEAAYLAALPKGPSNYDPFRKNKAAI------ARRNWVIDRMEENG 241 (817) Q Consensus 170 ~YLN~v~~G~~~yGv~aAA~~YF~K~~~--dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~------~Rr~~VL~~M~~~g 241 (817) +|=-.|++|.=..-+.-..+.+|+...+ +||.+|.++|+.|-..+ ..+|. +.+. .---.+|++|.+.| T Consensus 7 ~~~~~~~lG~Li~~v~~~~~~~~~~~L~~~gLt~~Q~~vL~~L~~~~-~~t~~---eLa~~l~id~~tvt~~ldrLe~~G 82 (144) T PRK11512 7 LFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAA-CITPV---ELKKVLSVDLGALTRMLDRLVCKG 82 (144) T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCHH---HHHHHHCCCHHHHHHHHHHHHHCC T ss_conf 78523859999999999999999998754599999999999999869-97999---999997888878999999999787 Q ss_pred CCCHHH Q ss_conf 111256 Q gi|254780752|r 242 YISQEQ 247 (817) Q Consensus 242 ~It~~e 247 (817) +|...- T Consensus 83 lI~R~~ 88 (144) T PRK11512 83 WVERLP 88 (144) T ss_pred CEEECC T ss_conf 966357 No 80 >pfam09317 DUF1974 Domain of unknown function (DUF1974). Members of this family of functionally uncharacterized domains are predominantly found in various prokaryotic acyl-coenzyme a dehydrogenases. Probab=28.61 E-value=35 Score=13.42 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.4 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 1461133873799999999998632 Q gi|254780752|r 92 DKNFYYHSGVDIFGIMRAVLHNIRN 116 (817) Q Consensus 92 D~rFy~H~GvD~~gi~RA~~~ni~~ 116 (817) |+-||.|-|.-....+||++-.+.+ T Consensus 27 D~~l~~Hig~~~~N~~Rs~~~glt~ 51 (284) T pfam09317 27 DKALFGHIGFAVSNAARAFWLGLTG 51 (284) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999899999999704 No 81 >pfam09339 HTH_IclR IclR helix-turn-helix domain. Probab=28.32 E-value=6.9 Score=18.09 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=32.0 Q ss_pred HHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 99873542344030271254440157643321111146678998887666542011125 Q gi|254780752|r 188 ALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQE 246 (817) Q Consensus 188 A~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~ 246 (817) --.+|......+++.|.|--.||+++-.. ..|..|.+.||+.++ T Consensus 8 iL~~~~~~~~~~~l~eia~~~gl~kstv~---------------RlL~tL~~~G~v~~d 51 (52) T pfam09339 8 ILEALAEAPGGLSLTEIARRTGLPKSTAH---------------RLLQTLVELGYVEQD 51 (52) T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH---------------HHHHHHHHCCCCCCC T ss_conf 99998628999899999999891999999---------------999999988191169 No 82 >KOG2263 consensus Probab=27.68 E-value=18 Score=15.34 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=13.3 Q ss_pred EECCHHHHHHHHHHHHHHHH Q ss_conf 53589999999999999873 Q gi|254780752|r 644 QVLDPMTAYQITSMLEGVIK 663 (817) Q Consensus 644 ~v~s~~~a~~~~~~L~~vv~ 663 (817) .+-..++|+++.-.+++-|. T Consensus 574 D~~~~~~~~QiALaikDEV~ 593 (765) T KOG2263 574 DQPRHETCYQIALAIKDEVE 593 (765) T ss_pred CCCHHHHHHHHHHHHHHHHH T ss_conf 76507899999998887887 No 83 >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Probab=27.11 E-value=37 Score=13.25 Aligned_cols=159 Identities=22% Similarity=0.316 Sum_probs=77.6 Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCC--CCCCCCEEEEECCCCEEEEEECC Q ss_conf 64065666611787213234443320012335665310000127887402-4665--44565237880378526664127 Q gi|254780752|r 444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPA--SVIMDAPIEVVSRGKIWKPENYS 520 (817) Q Consensus 444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~--t~~~D~p~~~~~~~~~~~p~N~~ 520 (817) |.++-..|+|.++.|...-.++.+=|+..+...| ..| +... +...+ +..+.. .--|.|++.. T Consensus 24 vs~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p-------------~~G~i~i~G~~~~~~-~~~~~~-~igy~~~~~~ 88 (293) T COG1131 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-------------TSGEILVLGYDVVKE-PAKVRR-RIGYVPQEPS 88 (293) T ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCC-------------CCEEEEECCCCCCCC-HHHHHC-EEEEEECCCC T ss_conf 4999828959999899999899999999679778-------------864999958627512-676505-2999947877 Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC-CCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEE Q ss_conf 6544225666666530440225887625972352110135565556-766563445100003776743220157440354 Q gi|254780752|r 521 KNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM-LPVLPMSLGAGETTVLRMVSAYAVFANGGKQIR 599 (817) Q Consensus 521 ~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~-~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~ 599 (817) ++..+|.++.|.......-..- ....+.+.++++.||+.... .+.-.++.|. ---+.+|. +|++ + T Consensus 89 --~~~~lTv~e~l~~~~~l~~~~~--~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~--kqrl~ia~---aL~~-----~ 154 (293) T COG1131 89 --LYPELTVRENLEFFARLYGLSK--EEAEERIEELLELFGLEDKANKKVRTLSGGM--KQRLSIAL---ALLH-----D 154 (293) T ss_pred --CCCCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCCCHHCCCHHHCCHHH--HHHHHHHH---HHHC-----C T ss_conf --7714759999999999849971--6679999999998699603288102379889--99999999---9966-----9 Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCC Q ss_conf 466676410244301335853235566666665545546755435358999999999999987348 Q gi|254780752|r 600 PSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHG 665 (817) Q Consensus 600 P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~G 665 (817) |-++ | .+++..-+||..+..+.++|+.-.+.| T Consensus 155 P~ll----------i------------------------LDEPt~GLDp~~~~~~~~~l~~l~~~g 186 (293) T COG1131 155 PELL----------I------------------------LDEPTSGLDPESRREIWELLRELAKEG 186 (293) T ss_pred CCEE----------E------------------------EECCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 9999----------9------------------------969977879999999999999999679 No 84 >PRK10893 hypothetical protein; Provisional Probab=26.88 E-value=37 Score=13.23 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=15.6 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC Q ss_conf 665310000127887402466544565237880378 Q gi|254780752|r 476 QPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRG 511 (817) Q Consensus 476 qpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~ 511 (817) .|+|-++-+. +-.++-.+.-.++..|.|+.+.+.+ T Consensus 121 ~~~s~iq~I~-T~~l~idL~tqd~~SD~~VtI~G~~ 155 (190) T PRK10893 121 TPDSQLRRIT-TDNAQINLVTQDVTSDDLVTLYGTT 155 (190) T ss_pred CCCCCCCEEE-CCCEEEECCCCEEECCCEEEEECCC T ss_conf 8975453898-2758980466468638709998798 No 85 >PRK07589 ornithine cyclodeaminase; Validated Probab=26.60 E-value=38 Score=13.19 Aligned_cols=27 Identities=22% Similarity=0.020 Sum_probs=22.8 Q ss_pred EEECCCCCCEEEEECCCCCCCEEEEEC Q ss_conf 752255531166406566661178721 Q gi|254780752|r 433 LRQIPKVQGGLIAMDPRTGRILATIGG 459 (817) Q Consensus 433 l~~~p~~q~a~V~id~~TG~IlA~vGg 459 (817) -...|.+++-++..|+.||+.+|+.-| T Consensus 79 ~~GLPtv~a~~~L~D~~TG~P~al~dg 105 (346) T PRK07589 79 RRGLQTVMAFGVLADVDTGYPLLLSEM 105 (346) T ss_pred CCCCCCCEEEEEEEECCCCCEEEEECC T ss_conf 138874138999985688977788523 No 86 >PRK09793 methyl-accepting protein IV; Provisional Probab=26.49 E-value=38 Score=13.18 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=13.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97899999999999999999999999 Q gi|254780752|r 1 MYYRIVSFIGYFFGFATYSILGAILG 26 (817) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (817) ||+||.---+.+++++++|++.++.+ T Consensus 1 Ml~nikI~t~L~~il~lf~ll~l~~~ 26 (533) T PRK09793 1 MFNRIRISTTLFLILILCGILQIGSN 26 (533) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99762489999999999999999999 No 87 >TIGR00918 2A060602 transmembrane receptor Patched; InterPro: IPR004766 Patched (Ptc) is a Drosophila melanogaster (Fruit fly) membrane protein that plays a critical role in patterning embryonic and imaginal tissues. It constitutively inactivates the transcription of genes wingless, decapentaplegic, and patched itself. The secreted protein, hedgehog (Hh) induces transcription of genes by opposing the patched signaling pathway . In humans, mutations affecting patched (Ptc) or smoothened (Smo) homologues that trigger ligand-independent activity of the Hedgehog (Hh) signalling pathway are associated with tumours such as basal cell carcinoma (BCC) and medulloblastoma . Patched is associated with a complex belonging to the hedgehog pathway. Members of the complex include cubitus interruptus, sex-lethal, patched and smoothened. The complex is present at the plasma membrane and the association of patched changes depending on the activation state of the pathway . ; GO: 0008158 hedgehog receptor activity, 0016021 integral to membrane. Probab=26.41 E-value=38 Score=13.17 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=69.7 Q ss_pred EEEEECCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHH-- Q ss_conf 666612560464179969788854543321461133873799999999998632047886-77611479998888770-- Q gi|254780752|r 63 MAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRR-PEGASTITQQVAKNFLL-- 139 (817) Q Consensus 63 i~~~~~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~-~qGgSTITQQlaKn~~l-- 139 (817) |-+--+++..+.+-+-+-.||.-|+-|+.=+=+....-=++.- +=+. +|.- .+++--| -|..+.++. T Consensus 119 IQT~~~~g~nvLt~eAL~~HL~~a~~As~V~V~lY~~~W~L~~--------~Cyk-sg~p~~E~~y~i-eqile~L~PC~ 188 (1215) T TIGR00918 119 IQTPHQEGANVLTPEALLQHLDSALKASRVKVYLYNREWDLED--------LCYK-SGEPLTEGGYYI-EQILEKLFPCL 188 (1215) T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHH--------HCCC-CCCCCCCHHHHH-HHHHHHHCCCE T ss_conf 0267888785351899999999987437446897468546576--------5048-886420203689-99998528852 Q ss_pred ---------------CCCCC----------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHH Q ss_conf ---------------88832----------------99999999999999866079999999720142674331099999 Q gi|254780752|r 140 ---------------TSNQT----------------MDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAA 188 (817) Q Consensus 140 ---------------~~e~t----------------~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA 188 (817) ++|-| ...=++|+-.-.-=|+--=.=|=.|-||++.-.|+| T Consensus 189 iiTPLDCFWEGakL~gPeg~~ylpG~np~l~WtnldP~~~l~elk~~~s~ekisfd~e~~ee~l~kA~vG~g-------- 260 (1215) T TIGR00918 189 IITPLDCFWEGAKLQGPEGTAYLPGKNPPLQWTNLDPASLLEELKQLASQEKISFDVESWEELLKKAAVGQG-------- 260 (1215) T ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-------- T ss_conf 645775310012033886216706888864121079899999963332220000011438999877410542-------- Q ss_pred HHHHCCC---HHHCCCCCEE Q ss_conf 9873542---3440302712 Q gi|254780752|r 189 LTYFNKS---VSELTIEEAA 205 (817) Q Consensus 189 ~~YF~K~---~~dLtl~EaA 205 (817) |-+|+ |.|++=+.+| T Consensus 261 --Ym~rPCLnP~dp~CP~~A 278 (1215) T TIGR00918 261 --YMERPCLNPADPDCPDTA 278 (1215) T ss_pred --CCCCCCCCCCCCCCCCCC T ss_conf --138788867756434788 No 88 >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Probab=26.34 E-value=38 Score=13.16 Aligned_cols=161 Identities=18% Similarity=0.243 Sum_probs=72.7 Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-CCCCEEEEEC-----CCCEEEEE Q ss_conf 64065666611787213234443320012335665310000127887402466544-5652378803-----78526664 Q gi|254780752|r 444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASV-IMDAPIEVVS-----RGKIWKPE 517 (817) Q Consensus 444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~-~~D~p~~~~~-----~~~~~~p~ 517 (817) |.++-..|+|+|++|-..-.++.+=+...+...| +.| ++ +++.++.-.. ..--|.|+ T Consensus 20 vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p-------------~~G----~I~~~g~~i~~~~~~~~~~~ig~v~Q 82 (211) T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-------------TSG----EVLVDGKDLTKLSLKELRRKVGLVFQ 82 (211) T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-------------CCC----CEEECCEECCCCCHHHHHCCEEEEEE T ss_conf 1788849979999889999899999999646779-------------888----77899999997998998403899977 Q ss_pred ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEE Q ss_conf 12765442256666665304402258876259723521101355655567665634451000037767432201574403 Q gi|254780752|r 518 NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQ 597 (817) Q Consensus 518 N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~ 597 (817) |.+..+. ..|+++-+..+....- +...--.+.+.+.++.+|+...... .+..|-.++---+.+|.| ++. T Consensus 83 ~p~~~~~-~~tv~e~i~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSGGqkQrv~iAra---l~~---- 151 (211) T cd03225 83 NPDDQFF-GPTVEEEVAFGLENLG--LPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGV---LAM---- 151 (211) T ss_pred CCHHHCC-CCCHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCHHHHHC-CHHHCCHHHHHHHHHHHH---HHC---- T ss_conf 8325305-5869999999999869--9999999999999998699466638-954599989999999999---975---- Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE Q ss_conf 5446667641024430133585323556666666554554675543535899999999999998734804 Q gi|254780752|r 598 IRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817) Q Consensus 598 ~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817) +|.++ ..+++..-+|+.+...+.++|+..-+.|+. T Consensus 152 -~P~il----------------------------------ilDEPTsgLD~~~~~~i~~~l~~l~~~g~t 186 (211) T cd03225 152 -DPDIL----------------------------------LLDEPTAGLDPAGRRELLELLKKLKAEGKT 186 (211) T ss_pred -CCCEE----------------------------------EEECCCCCCCHHHHHHHHHHHHHHHHCCCE T ss_conf -99999----------------------------------997985558999999999999999978999 No 89 >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] Probab=26.11 E-value=38 Score=13.14 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=14.9 Q ss_pred CEEEEECCCCCCCEEEEE Q ss_conf 116640656666117872 Q gi|254780752|r 441 GGLIAMDPRTGRILATIG 458 (817) Q Consensus 441 ~a~V~id~~TG~IlA~vG 458 (817) -.++.|||.||+|+|++- T Consensus 196 ~~I~rI~p~sGrV~~wid 213 (262) T COG3823 196 TRIARIDPDSGRVVAWID 213 (262) T ss_pred CCEEEECCCCCCEEEEEE T ss_conf 405997378881899999 No 90 >PRK08291 ornithine cyclodeaminase; Validated Probab=25.82 E-value=39 Score=13.10 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.3 Q ss_pred EECCCCCCEEEEECCCCCCCEEEE Q ss_conf 522555311664065666611787 Q gi|254780752|r 434 RQIPKVQGGLIAMDPRTGRILATI 457 (817) Q Consensus 434 ~~~p~~q~a~V~id~~TG~IlA~v 457 (817) ...|..+|-+++.|+.||+.+|+. T Consensus 82 ~glP~~~g~i~L~d~~TG~p~Ail 105 (330) T PRK08291 82 LGLPSLNGLMLVLSARTGLVEALL 105 (330) T ss_pred CCCCCCCEEEEEEECCCCCEEEEE T ss_conf 488765479999987889868998 No 91 >pfam06510 DUF1102 Protein of unknown function (DUF1102). This family consists of several hypothetical archaeal proteins of unknown function. Probab=25.21 E-value=40 Score=13.03 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=3.8 Q ss_pred HHHHCCCCCE Q ss_conf 3220157440 Q gi|254780752|r 587 AYAVFANGGK 596 (817) Q Consensus 587 aya~~AN~G~ 596 (817) .|+.+.++|+ T Consensus 52 PY~yi~~~Gk 61 (183) T pfam06510 52 PYVYLNNNGK 61 (183) T ss_pred CEEEECCCCE T ss_conf 4589847984 No 92 >pfam06259 DUF1023 Alpha/beta hydrolase of unknown function (DUF1023). Family of uncharacterized proteins found in Actinobacteria. Members of this family have an alpha/beta hydrolase fold. Probab=25.20 E-value=40 Score=13.03 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=25.8 Q ss_pred CCCEEEEEEEECCCCCCCCCCC-CC--CCCCHHHHHHHHHHHHC Q ss_conf 6987999998266898278986-44--21217999999999974 Q gi|254780752|r 696 TPTLVVGVYVGYDIPAPLNNHA-TG--STLTAPIFNAFMKEALK 736 (817) Q Consensus 696 tp~~~~~vWvG~D~~~~~~~~~-~G--~~~a~piw~~~m~~~~~ 736 (817) ....++.+|+|||-|....... +. +..++|-...|++.+-. T Consensus 60 ~~~~AvI~WlGYdaP~~~~~~a~~~~~A~~ga~~L~~F~~gL~a 103 (177) T pfam06259 60 PNAVAVIAWLGYTPPSGGLWDVATDDLARAGAPRLNRLLRDLRA 103 (177) T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99858999778779987653545807999989999999998750 No 93 >pfam02023 SCAN SCAN domain. The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerisation. Probab=24.42 E-value=41 Score=12.93 Aligned_cols=10 Identities=50% Similarity=0.630 Sum_probs=3.8 Q ss_pred HHCHHHHHHH Q ss_conf 6079999999 Q gi|254780752|r 161 AYDKEKILEF 170 (817) Q Consensus 161 ~~sK~eILe~ 170 (817) ..||+||||+ T Consensus 40 ~hTKEqIlEl 49 (93) T pfam02023 40 IHTKEQILEL 49 (93) T ss_pred HCCHHHHHHH T ss_conf 2239999999 No 94 >pfam06637 PV-1 PV-1 protein (PLVAP). This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown. Probab=23.80 E-value=42 Score=12.85 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254780752|r 6 VSFIGYFFGFATYSILGAILGASIYIA 32 (817) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (817) +-++++||.|+.++-+.+|+|+.++.. T Consensus 22 wYYLryfFlFvSLIQfLIIlgLVLFmV 48 (442) T pfam06637 22 WYYLRYFFLFVSLIQFLIILGLVLFMI 48 (442) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 799999999999999999999999964 No 95 >TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit. Probab=23.79 E-value=37 Score=13.26 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=14.7 Q ss_pred HHHHHHHC---CCCEEEEEECCCCCCC Q ss_conf 25887625---9723521101355655 Q gi|254780752|r 541 TVRLAHNM---GMTVVADYAENFGIYD 564 (817) Q Consensus 541 ~v~l~~~~---G~~~~~~~~~~~Gi~~ 564 (817) |+.|+.++ -.+..+|.+=+|||+. T Consensus 24 Ai~LlK~~~~aKFDeTVeva~~LG~Dp 50 (227) T TIGR01169 24 AIALLKETATAKFDETVEVAIRLGIDP 50 (227) T ss_pred HHHHHHHCCCCCCCCEEEEEEECCCCC T ss_conf 999997326554334178888747588 No 96 >TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase; InterPro: IPR012752 This entry represents the WecD protein (formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetyltransferases.. Probab=23.60 E-value=43 Score=12.83 Aligned_cols=77 Identities=23% Similarity=0.297 Sum_probs=49.3 Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCHHH---HHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEC Q ss_conf 640656666117872132344433200-12335665310000---12788740246654456523788037852666412 Q gi|254780752|r 444 IAMDPRTGRILATIGGFSYSQSEFNRS-TQAMRQPGSCFKPI---VYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENY 519 (817) Q Consensus 444 V~id~~TG~IlA~vGg~d~~~~~~NrA-~~~~rqpGSt~KP~---vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N~ 519 (817) ..|.-.||++..+|.=|+-+.+.= |- .-+. =||-++|=+ .+.+| ..|+ T Consensus 111 L~~~da~g~p~G~VtLR~L~d~dA-RIGLLav-~PG~~~rGiG~~LM~~A----------------------~~Wc---- 162 (201) T TIGR02382 111 LLLRDAAGDPRGYVTLRELDDSDA-RIGLLAV-FPGVTIRGIGARLMALA----------------------KAWC---- 162 (201) T ss_pred HHHHCCCCCCEEEEEEEECCCCCC-CEECCCC-CCCCCEECHHHHHHHHH----------------------HHHH---- T ss_conf 522244779404687400478765-3301003-78741204568999999----------------------9999---- Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC Q ss_conf 76544225666666530440225887625972 Q gi|254780752|r 520 SKNFSGASTLRFGLEKSRNLMTVRLAHNMGMT 551 (817) Q Consensus 520 ~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~ 551 (817) ..+|.++||-|.+.| ||.+.|+.-+-|.. T Consensus 163 --~~~Gl~rLRVATQ~g-N~AALrlYirsGA~ 191 (201) T TIGR02382 163 --RRRGLIRLRVATQMG-NVAALRLYIRSGAS 191 (201) T ss_pred --HHCCCEEEEHHHHHH-HHHHHHHHHHCCCC T ss_conf --875982440333246-79999999863897 No 97 >PTZ00112 origin recognition complex 1 protein; Provisional Probab=23.46 E-value=43 Score=12.81 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=3.9 Q ss_pred CCCHHHHHHH Q ss_conf 1211248877 Q gi|254780752|r 333 IDLKKDWGNT 342 (817) Q Consensus 333 ~~~~~~~~~~ 342 (817) ++....|.+. T Consensus 220 ~~~~~hWenl 229 (650) T PTZ00112 220 FNIKTHWDNL 229 (650) T ss_pred CCCCCCHHHH T ss_conf 6641127675 No 98 >KOG4499 consensus Probab=22.75 E-value=44 Score=12.72 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=6.9 Q ss_pred CCCEEEEEEEE Q ss_conf 69879999982 Q gi|254780752|r 696 TPTLVVGVYVG 706 (817) Q Consensus 696 tp~~~~~vWvG 706 (817) ||+.++.+..| T Consensus 253 t~qitsccFgG 263 (310) T KOG4499 253 TPQITSCCFGG 263 (310) T ss_pred CCCEEEEEECC T ss_conf 88547887338 No 99 >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] Probab=22.63 E-value=40 Score=13.01 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=25.3 Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 640656666117872132344433200123356653 Q gi|254780752|r 444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGS 479 (817) Q Consensus 444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGS 479 (817) |.+|-..|||+|++|-..-.+|.+=++..+..+|.| T Consensus 20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~ 55 (259) T COG4559 20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS 55 (259) T ss_pred CCEECCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC T ss_conf 315416872799988898658889998617637888 No 100 >pfam10925 DUF2680 Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known. Probab=22.56 E-value=45 Score=12.70 Aligned_cols=29 Identities=41% Similarity=0.410 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 46678998887666542011125688875 Q gi|254780752|r 224 KAAIARRNWVIDRMEENGYISQEQALVAK 252 (817) Q Consensus 224 ~~a~~Rr~~VL~~M~~~g~It~~e~~~a~ 252 (817) +...+-|.-+++..++.|.||+++.+.-+ T Consensus 14 kqi~el~Kqii~KyVe~G~iT~eQa~~i~ 42 (59) T pfam10925 14 KQIAELRKQVIDKYVEAGVITKEQADHIK 42 (59) T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999999982756499999999 No 101 >COG4448 AnsA L-asparaginase II [Amino acid transport and metabolism] Probab=22.41 E-value=45 Score=12.68 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=30.5 Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 53116640656666117872132344433200123356653100001278874024 Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGY 494 (817) Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~ 494 (817) -++++||+| ..|.++-..|..+ ...| |-|.+|||-..+-.|.|- T Consensus 26 H~g~a~V~D-~dGr~l~~~Gd~e--~~~F---------pRSA~K~~QALplvetGa 69 (339) T COG4448 26 HRGAAVVVD-GDGRVLFSAGDSE--RPTF---------PRSALKAFQALPLVETGA 69 (339) T ss_pred CEEEEEEEC-CCCCEEEECCCCC--CCCC---------CHHHHHHHHHCCCCCCCC T ss_conf 012589984-8996787416666--7756---------166655655333101464 No 102 >COG1636 Uncharacterized protein conserved in bacteria [Function unknown] Probab=21.90 E-value=46 Score=12.61 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=49.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-----HHHHHHHHHHHCCCHHHH Q ss_conf 332111114667899888766654201112568887530111244543222345715-----679988531100124331 Q gi|254780752|r 216 NYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEY-----FAEEVRRQLIDRYGEKAL 290 (817) Q Consensus 216 ~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~y-----f~e~V~~~l~~~~ge~~l 290 (817) -|||-.+|..--.+|..+-.++.+.=- |.+ ..++| |.+.|+ |-+.. T Consensus 34 FYNPNIhP~~EY~~R~~e~~~f~~~~~-------------i~~---------iegdY~~~~~w~~~vK-------g~E~E 84 (204) T COG1636 34 FYNPNIHPLSEYELRKEEVKRFAEKFG-------------INF---------IEGDYEDLEKWFERVK-------GMEDE 84 (204) T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCC-------------CEE---------EECCCCCHHHHHHHHH-------CCHHC T ss_conf 748998926999999999999999829-------------705---------5357555899999961-------62007 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHH Q ss_conf 2573289852488898999999998767654 Q gi|254780752|r 291 YEDGLSIRTSLDPQLQLYARKALQNGLINYD 321 (817) Q Consensus 291 ~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d 321 (817) -.+|.+-+...|.++-..|+.|...+...+. T Consensus 85 pE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ft 115 (204) T COG1636 85 PEGGKRCTMCFDMRLEKTAKKAKELGFDVFT 115 (204) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 7778423778999899999999982962101 No 103 >TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes.. Probab=21.86 E-value=20 Score=15.02 Aligned_cols=69 Identities=25% Similarity=0.309 Sum_probs=41.6 Q ss_pred EEEECCCCC----CCCCCCCCCCCCCCCE---EHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 211013556----5556766563445100---003776743220157440354466676410244301335853235566 Q gi|254780752|r 554 ADYAENFGI----YDKMLPVLPMSLGAGE---TTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCN 626 (817) Q Consensus 554 ~~~~~~~Gi----~~~~~~~~s~alG~~~---vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~ 626 (817) .++|+..|. ..+..|...-..|.+| +-|+. +||.|+.+= T Consensus 238 NE~A~~sg~~i~l~E~~iPV~eeV~gaCE~LGldPl~-------lANEG~~v~--------------------------- 283 (345) T TIGR02124 238 NEIAESSGVGIELEEEKIPVKEEVKGACELLGLDPLY-------LANEGKLVL--------------------------- 283 (345) T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHH-------HHCCCEEEE--------------------------- T ss_conf 9999961992799852478837899999861703254-------204762899--------------------------- Q ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHC-CCCCCE Q ss_conf 666665545546755435358999999999999987348043210-599604 Q gi|254780752|r 627 YDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKV-RLNRPV 677 (817) Q Consensus 627 ~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~-~~~~~i 677 (817) +++++.|..+..+|+... -|+.|. +.|.-+ T Consensus 284 ------------------~V~~E~A~~vLe~lk~hp---~G~~A~YiIG~V~ 314 (345) T TIGR02124 284 ------------------AVPPEAAEKVLEILKSHP---LGKDAAYIIGEVV 314 (345) T ss_pred ------------------EECHHHHHHHHHHHHHCC---CCCCCCEEEEEEE T ss_conf ------------------828377999999986077---6433215630147 No 104 >pfam11084 DUF2621 Protein of unknown function (DUF2621). This family is conserved in the Bacillaceae family. Several members are named as YneK. The function is not known. Probab=21.81 E-value=46 Score=12.60 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=18.4 Q ss_pred CCCCCHHHHHHH-HHHHH-CCCC---CHHHHHHHH Q ss_conf 776114799988-88770-8883---299999999 Q gi|254780752|r 123 PEGASTITQQVA-KNFLL-TSNQ---TMDRKIKEI 152 (817) Q Consensus 123 ~qGgSTITQQla-Kn~~l-~~e~---t~~RK~~E~ 152 (817) ..++|.||+.++ |-+.+ ++.| -+.+|++|- T Consensus 96 ~e~a~~it~dliIrGYI~ATPKRDhkFL~k~L~ek 130 (141) T pfam11084 96 KEKASRITLDLIIRGYILATPKRDHKFLRKKLKEK 130 (141) T ss_pred HCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHH T ss_conf 72701652878574311217764449999999983 No 105 >KOG0506 consensus Probab=21.67 E-value=47 Score=12.58 Aligned_cols=70 Identities=23% Similarity=0.235 Sum_probs=44.3 Q ss_pred CCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHH Q ss_conf 44510000377674322015744035446667641024430133585323556666666554554675543535899999 Q gi|254780752|r 573 SLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAY 652 (817) Q Consensus 573 alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~ 652 (817) -|-+.|+|---+|-.-+|+||||+- |. ..+++++++.+. T Consensus 368 QlCSiEvtCes~aVMAaTLANGGvc--Pi---------------------------------------t~E~~l~~~~cR 406 (622) T KOG0506 368 QLCSIEVTCESAAVMAATLANGGVC--PI---------------------------------------TGERCLSPRACR 406 (622) T ss_pred HHHEEEEECCHHHHHHHHHHCCCCC--CC---------------------------------------CCCCCCCCHHHH T ss_conf 3222453011789999997538837--78---------------------------------------777036837777 Q ss_pred HHHHHHHHHHH-CCCEEHHCCCCCCEEEEECCCC Q ss_conf 99999999873-4804321059960467604678 Q gi|254780752|r 653 QITSMLEGVIK-HGTATGKVRLNRPVAGKTGTTS 685 (817) Q Consensus 653 ~~~~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~ 685 (817) -+.++|..--- .-+|.-|...|.| +|.|-+- T Consensus 407 dtLSLMySCGMYD~SGqFaFhVGLP--AKSgVsG 438 (622) T KOG0506 407 DTLSLMYSCGMYDFSGQFAFHVGLP--AKSGVSG 438 (622) T ss_pred HHHHHHHHCCCCCCCCCEEEEECCC--CCCCCCC T ss_conf 8999987526622456357885575--3246665 No 106 >TIGR02099 TIGR02099 conserved hypothetical protein TIGR02099; InterPro: IPR011836 This entry describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane.. Probab=21.64 E-value=47 Score=12.58 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCC Q ss_conf 999999999999999999999999987046989788512477887799907894 Q gi|254780752|r 8 FIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGA 61 (817) Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~l~~~~~~~~t~iyd~dG~ 61 (817) +.++++.+++++++++++.+++..+. ||.+++ |+++....|-.+-|. T Consensus 3 L~~~~~~l~A~~lV~~AL~Vs~~r~l----LP~~d~---~R~~i~~~~~s~~G~ 49 (1362) T TIGR02099 3 LRRIALSLLALILVVAALLVSLLRQL----LPLVDE---YRPQIEQKLSSALGI 49 (1362) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHCC T ss_conf 48899999999999999999999986----234554---469999988775188 No 107 >pfam10758 DUF2586 Protein of unknown function (DUF2586). This bacterial family of proteins has no known function. Probab=21.61 E-value=44 Score=12.73 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=8.3 Q ss_pred CCCCCCHHHH--HHHHHHCC Q ss_conf 6653100001--27887402 Q gi|254780752|r 476 QPGSCFKPIV--YAAALDSG 493 (817) Q Consensus 476 qpGSt~KP~v--y~~Ale~G 493 (817) +.-|.=+|+. -+.||+.- T Consensus 210 P~D~~g~~l~lAtl~aL~~~ 229 (363) T pfam10758 210 PVDKDGKPLTLATLAALDAA 229 (363) T ss_pred CCCCCCCCCCHHHHHHHHHC T ss_conf 84889887538999999863 No 108 >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur.. Probab=21.56 E-value=27 Score=14.12 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=29.4 Q ss_pred CCEEEEE---CCCCCCCEEE-EECCCCCCCCC---------------------CCCCCCCCCCCCCCHH Q ss_conf 3116640---6566661178-72132344433---------------------2001233566531000 Q gi|254780752|r 440 QGGLIAM---DPRTGRILAT-IGGFSYSQSEF---------------------NRSTQAMRQPGSCFKP 483 (817) Q Consensus 440 q~a~V~i---d~~TG~IlA~-vGg~d~~~~~~---------------------NrA~~~~rqpGSt~KP 483 (817) ..-++|| |.++.+|+|+ .|-+||...-| ||-.+....+|||-=+ T Consensus 74 ~TKVIViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~ 142 (451) T TIGR02915 74 DTKVIVITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALE 142 (451) T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 804899866898388999964375101357875789999999988888888876998740688741036 No 109 >TIGR03639 cas1_NMENI CRISPR-associated protein Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system. Probab=21.44 E-value=47 Score=12.55 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=22.3 Q ss_pred HHCHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHC Q ss_conf 60799999997201426743310999-9998735 Q gi|254780752|r 161 AYDKEKILEFYLNEIFFGFNSYGIAS-AALTYFN 193 (817) Q Consensus 161 ~~sK~eILe~YLN~v~~G~~~yGv~a-AA~~YF~ 193 (817) ...+.+.|+.+.+.+-.|. .-|+|+ ||+.||+ T Consensus 123 ~~~~~~~l~~~~~~i~~~d-~~~~EG~aA~~Yf~ 155 (278) T TIGR03639 123 LDEDSEKLKNLAKKVESGD-KTNREAHAAKLYFK 155 (278) T ss_pred CCCHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHH T ss_conf 7634899999998636577-40369999999999 No 110 >TIGR00462 genX lysyl-tRNA synthetase homolog GenX; InterPro: IPR004525 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . This entry represents lysyl-tRNA synthetases from bacteria, as well as other related proteins. Escherichia coli, Haemophilus influenzae, and Aquifex aeolicus each have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS, so they appear to be orthologous. The protein is termed PoxA or GenX after its designation in E. coli. Its function is unknown.; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm. Probab=21.43 E-value=26 Score=14.31 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=23.2 Q ss_pred EEECHHHCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 464179969788854543321461133873 Q gi|254780752|r 72 LFLPIQIIPSHVKYAFVSAEDKNFYYHSGV 101 (817) Q Consensus 72 ~~v~~~~ip~~l~~A~iA~ED~rFy~H~Gv 101 (817) .|-|-.+|+-+|+.|-+-+|=|+||...|+ T Consensus 11 ~W~Psa~i~n~LkRa~~i~~iR~FF~e~G~ 40 (330) T TIGR00462 11 AWQPSADIKNLLKRAKIIAEIRKFFKERGL 40 (330) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 578652246778899999999998861784 No 111 >pfam02743 Cache_1 Cache domain. Probab=21.34 E-value=47 Score=12.54 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=4.5 Q ss_pred EECCCCCEEEEE Q ss_conf 990789496666 Q gi|254780752|r 55 IHAGNGALMAEY 66 (817) Q Consensus 55 iyd~dG~~i~~~ 66 (817) |||.||+++|-+ T Consensus 21 i~d~~g~~~GVv 32 (81) T pfam02743 21 VYDRDGDLLGVI 32 (81) T ss_pred EECCCCCEEEEE T ss_conf 999999899999 No 112 >PRK10418 nikD nickel transporter ATP-binding protein; Provisional Probab=21.05 E-value=48 Score=12.50 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=23.2 Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 64065666611787213234443320012335665 Q gi|254780752|r 444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPG 478 (817) Q Consensus 444 V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpG 478 (817) |.++-.-|+++|++|...-.+|.+=++..+.-+|| T Consensus 22 Isl~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~ 56 (254) T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAG 56 (254) T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC T ss_conf 07289899999999999878999999995799889 No 113 >TIGR02042 sir sulfite reductase, ferredoxin dependent; InterPro: IPR011787 Distantly related to the iron-sulphur hemoprotein of sulphite reductase (NADPH) found in Proteobacteria and Eubacteria, sulphite reductase (ferredoxin) is a cyanobacterial and plant monomeric enzyme that also catalyzes the reduction of sulphite to sulphide.; GO: 0020037 heme binding, 0050311 sulfite reductase (ferredoxin) activity, 0051539 4 iron 4 sulfur cluster binding. Probab=20.96 E-value=37 Score=13.23 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=30.6 Q ss_pred HHHHHHHHHCCCHHHHC---CCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 99885311001243312---573289852488898999999998 Q gi|254780752|r 275 EEVRRQLIDRYGEKALY---EDGLSIRTSLDPQLQLYARKALQN 315 (817) Q Consensus 275 e~V~~~l~~~~ge~~l~---~~Gl~I~TTiD~~lQ~~Ae~ai~~ 315 (817) -++..+|.+.||...|. +.++..|=-|-.+|......+|+| T Consensus 86 YL~lD~LAD~yG~gTLR~TTRQ~FQlHG~LK~nLKtv~~~Iv~N 129 (583) T TIGR02042 86 YLTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVKN 129 (583) T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998887873761111222101333224478799999999986 No 114 >smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1). Probab=20.90 E-value=48 Score=12.48 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=36.4 Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 4401576433211111466789988876665420111256888753011124454322234571567998853 Q gi|254780752|r 208 AALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQ 280 (817) Q Consensus 208 Agi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~ 280 (817) +-+++--+..+| |+-+..-|..|++.| +|.|+.||......+.+.... -||++-+.++. T Consensus 10 ~tLi~l~s~~~~---pe~~~~Vr~LV~~L~--~~~i~~EeF~~~Lq~~lns~p---------qP~lvPFLK~s 68 (92) T smart00549 10 TTLIQLSNDISQ---PEVAERVRTLVLGLV--NGTITAEEFTSRLQEALNSPL---------QPYLIPFLKNS 68 (92) T ss_pred HHHHHHHCCCCC---CHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCC---------CCHHHHHHHHH T ss_conf 999998667997---079899999999998--188789999999999865999---------72129999970 No 115 >pfam06860 consensus Probab=20.58 E-value=49 Score=12.43 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=20.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCH Q ss_conf 329999999999999986607999999972014267433109999998735423 Q gi|254780752|r 143 QTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSV 196 (817) Q Consensus 143 ~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~ 196 (817) |+..++|++++.+.--+..+.- -+ -.||+.||.-.- T Consensus 24 k~~I~~Ik~av~~YaqD~SLKG---------------kA---v~aSK~Yf~~TY 59 (170) T pfam06860 24 KKQITAIKNAVIAYLQDNSLKG---------------EA---ISASKNYYQMTY 59 (170) T ss_pred HHHHHHHHHHHHHHHHCCCCCC---------------HH---HHHHHHHHHHHH T ss_conf 9999999999999866356443---------------14---688888898978 No 116 >COG3726 AhpA Uncharacterized membrane protein affecting hemolysin expression [General function prediction only] Probab=20.57 E-value=6 Score=18.51 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=25.7 Q ss_pred CEEEECHHHCCH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 604641799697--8885454332146113387379999999999863204788677611479998888770 Q gi|254780752|r 70 NRLFLPIQIIPS--HVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLL 139 (817) Q Consensus 70 ~R~~v~~~~ip~--~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l 139 (817) .|..+-+++.-+ .+-+|-|-.+|-+---|.|=.. |+|...+=....-|+-++||+|.-++. T Consensus 72 e~l~alln~l~k~~~VldAsIY~~~g~LlA~ag~~~---------~vR~~l~Ldg~~~g~y~nqQiVEPI~~ 134 (214) T COG3726 72 ERLNALLNQLTKESLVLDASIYDEDGDLLARAGSSV---------NVRDRLALDGKTAGLYFNQQIVEPIAG 134 (214) T ss_pred HHHHHHHHHHHCCCEEEECEEECCCCHHHHHCCCCC---------CHHHHHHCCCCCCCCCCCCEEECCCCC T ss_conf 999999998720652420001335334567416630---------021554147888866334532100235 No 117 >TIGR02647 DNA conserved hypothetical protein TIGR02647; InterPro: IPR013468 Proteins in this entry are found, so far, only in the Gammaproteobacteria. Their function is currently unknown. The location on the chromosome is usually not far from housekeeping genes. Some proteins have been annotated in public databases as DNA-binding protein inhibitors, putative transcriptional regulators, or hypothetical DNA binding proteins.. Probab=20.30 E-value=50 Score=12.40 Aligned_cols=37 Identities=16% Similarity=0.416 Sum_probs=26.7 Q ss_pred HHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH Q ss_conf 10012433125732898524888989999999987676 Q gi|254780752|r 282 IDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLIN 319 (817) Q Consensus 282 ~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~ 319 (817) ...|.-+. -..|+||+.+-++.++.++.+-.+++|.. T Consensus 14 L~lF~l~~-~~~G~Kv~~~A~~~~~aA~~RL~~K~L~~ 50 (77) T TIGR02647 14 LALFNLSS-TQEGLKVHSTASPAAVAAAKRLYEKGLTD 50 (77) T ss_pred HHHHCCCC-CCCCCEEECHHHHHHHHHHHHHHHCCCCC T ss_conf 98733433-23773010010378999999887337755 Done!