HHsearch alignment for GI: 254780752 and conserved domain: pfam00768
>pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase.
Probab=97.35 E-value=0.0036 Score=39.91 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCC--EEEEEC-CC--C
Q ss_conf 166406566661178721323444332001233566531000012788740---2-4665445652--378803-78--5
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDA--PIEVVS-RG--K 512 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~--p~~~~~-~~--~ 512 (817)
T Consensus 14 saiv~D~~tg~iL~~k-------n-----~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~~~~~~~~~~~~s~ 81 (241)
T pfam00768 14 SAILVDYNTGKVLYEK-------N-----ADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALGNFRGSSN 81 (241)
T ss_pred EEEEEECCCCCEEEEE-------C-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCCE
T ss_conf 9999999999790006-------9-----099817789999999999999756289885444210188998637888734
Q ss_pred EEEEEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCCC--CCEEH
Q ss_conf 2666412765442256666----66530440225887625972------352110135565556766563445--10000
Q gi|254780752|r 513 IWKPENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSLG--AGETT 580 (817)
Q Consensus 513 ~~~p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~alG--~~~vt 580 (817)
T Consensus 82 ~~l------~~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~T~F~np-~GL~~~~~~sT 154 (241)
T pfam00768 82 MFL------KPGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKNTRFVNP-TGLDNHGQYSS 154 (241)
T ss_pred EEE------CCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC-CCCCCCCCEEC
T ss_conf 653------48999889999999987564599999999845829999999999999819999866668-77778886667
Q ss_pred HHHHHHHHHHCC
Q ss_conf 377674322015
Q gi|254780752|r 581 VLRMVSAYAVFA 592 (817)
Q Consensus 581 pl~la~aya~~A 592 (817)
T Consensus 155 A~Dla~l~~~~~ 166 (241)
T pfam00768 155 ARDLAILARALI 166 (241)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998