HHsearch results for GI: 254780752 and protein with PDBid: 3mfd_A
>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis}
Probab=97.26 E-value=0.00012 Score=48.21 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=76.2
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEE--EC
Q ss_conf 1664065666611787213234443320012335665310000127887402466544565237880378526664--12
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPE--NY 519 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~--N~ 519 (817)
+.|+||..||+||.--. .+.+++|.|+-|.++...|||++- +++ .+.+.. ..|... +.
T Consensus 11 saiv~D~~tG~iL~~kn------------~~~~~~pASlTKlmT~~v~le~~~-l~~-----~v~vs~--~a~~~~~s~~ 70 (334)
T 3mfd_A 11 SAIIIDGASGRVLYAKD------------EHQKRRIASITKIMTAVLAIESGK-MDQ-----TVTVSA--NAVRTEGSAI 70 (334)
T ss_dssp EEEEEETTTCCEEEEES------------TTCCBCCGGGGHHHHHHHHHHTTC-TTS-----EEECCH--HHHHCCSSCC
T ss_pred EEEEEECCCCCCHHHCC------------CCCCCCCHHHHHHHHHHHHHHCCC-CCC-----EEEECH--HHHCCCCCEE
T ss_conf 99999999998902069------------099895688999999999995889-998-----699889--9943799535
Q ss_pred CCCCCC-HHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCCC---CCEEHHHHHH
Q ss_conf 765442-256666----66530440225887625972------352110135565556766563445---1000037767
Q gi|254780752|r 520 SKNFSG-ASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSLG---AGETTVLRMV 585 (817)
Q Consensus 520 ~~~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~alG---~~~vtpl~la 585 (817)
. -..| .+++++ .|..|-|-.++-|++.++-. .+-+.|+++|+.+-...+ +.+|- ..-.|+-+||
T Consensus 71 ~-l~~g~~~tv~dLl~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~n-~~GL~~~~~~~sTa~Dla 148 (334)
T 3mfd_A 71 Y-LTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQN-PHGLDDHENHYSTAYDMA 148 (334)
T ss_dssp C-CCTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHTCTTCBCSS-SSCCSCSSSCBBCHHHHH
T ss_pred E-ECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCCCCCCCCHHHHH
T ss_conf 3-54898760999999998763577999999872697899999999999995885760146-756758667775699999
Q ss_pred HHHHHCC
Q ss_conf 4322015
Q gi|254780752|r 586 SAYAVFA 592 (817)
Q Consensus 586 ~aya~~A 592 (817)
.....+.
T Consensus 149 ~l~~~~~ 155 (334)
T 3mfd_A 149 ILTKYAM 155 (334)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
T ss_conf 9998640