HHsearch results for GI: 254780752 and protein with PDBid: 3oc2_A
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=100.00 E-value=0 Score=482.40 Aligned_cols=282 Identities=25% Similarity=0.337 Sum_probs=238.0
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCC---------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEC
Q ss_conf 311664065666611787213234443---------320012335665310000127887402-4665445652378803
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSE---------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVS 509 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~ 509 (817)
.+++|+|||+||+||||++.++|+.+. +|||+++.+|||||||||++++|||+| +++.+.+++.|..+..
T Consensus 231 ~g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle~g~~~~~~~~~~~~~~~~~ 310 (564)
T 3oc2_A 231 AGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQI 310 (564)
T ss_dssp CEEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHHTTSCCTTCEEECTTSEEEE
T ss_pred EEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEEC
T ss_conf 02699972688838872378986643212468467775776186788635778999999977972564267527862535
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC--------------------
Q ss_conf 785266641276544225666666530440225887625972352110135565556766--------------------
Q gi|254780752|r 510 RGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPV-------------------- 569 (817)
Q Consensus 510 ~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~-------------------- 569 (817)
+ +.+.|+....+|.+++++||++|||++|++++.++|.+++.+++++|||..+...+
T Consensus 311 g---~~~~~~~~~~~g~~~l~~al~~S~Nv~f~~l~~~lg~~~~~~~~~~fG~g~~~~id~p~~~~~~~~~~~~~~~~~~ 387 (564)
T 3oc2_A 311 G---RYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAET 387 (564)
T ss_dssp T---TEEEECSCCCCSEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSCTTCCCCBCCCCSSCCHHHH
T ss_pred C---CCEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 8---7102013234552021110121667199999998758999999997799877799974221577776443223320
Q ss_pred CCCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCH
Q ss_conf 56344510-00037767432201574403544666764102443013358532355666666655455467554353589
Q gi|254780752|r 570 LPMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDP 648 (817)
Q Consensus 570 ~s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ 648 (817)
.++++|++ .+||||||.+|++|||+|.+++|++++++.+. ...+|+|+
T Consensus 388 ~~~~~Gqg~~vTPlqma~~~a~iAN~G~~~~p~~~~~~~~~-------------------------------~~~~vis~ 436 (564)
T 3oc2_A 388 ATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVP-------------------------------DGVQVISP 436 (564)
T ss_dssp HHHHTTCSCBBCHHHHHHHHHHHHTTTEECCCBSBCCSSCC-------------------------------CCEECSCH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECEEEEEECCC-------------------------------CCCCCCCH
T ss_conf 02213887346799999988762279879603578740366-------------------------------43356898
Q ss_pred HHHHHHHHHHHHHHH-CCCEEHHCCCCCCEEEEECCCC-----------CCCCEEEEEECC----CEEEEEEEECCCCCC
Q ss_conf 999999999999873-4804321059960467604678-----------970227984569----879999982668982
Q gi|254780752|r 649 MTAYQITSMLEGVIK-HGTATGKVRLNRPVAGKTGTTS-----------SYRDTWFIGYTP----TLVVGVYVGYDIPAP 712 (817)
Q Consensus 649 ~~a~~~~~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~-----------~~~D~WfvG~tp----~~~~~vWvG~D~~~~ 712 (817)
++|+.|++||+.||+ .||+.++...|+++||||||++ +..++||+||+| +|+++||+. ++.
T Consensus 437 ~~a~~v~~~l~~Vv~~~gt~~~a~~~g~~iAGKTGTAq~~~~~~~~~~~~~~~awFvGy~P~~~P~~av~V~v~--~~~- 513 (564)
T 3oc2_A 437 EVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIAMVVVID--EPS- 513 (564)
T ss_dssp HHHHHHHHHHHHHHHSTTSCGGGCCTTSCCEEEEEEEEC-----------CEEEEEEEEECTTSCCEEEEEEEE--EC--
T ss_pred HHHHHHHHHHHHEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE--CCC-
T ss_conf 99999999997469789988864279967999862361155888762268866999999877998599999990--289-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHC
Q ss_conf 78986442121799999999997489830067977716998403227
Q gi|254780752|r 713 LNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTG 759 (817)
Q Consensus 713 ~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG 759 (817)
+.+.+||+.|+|||++||+.+++.++..+|..|++++...||..++
T Consensus 514 -~~g~~Gg~~AaPi~~~im~~~l~~~~v~p~~~p~~~~~~~~~~~~~ 559 (564)
T 3oc2_A 514 -KAGYFGGLVSAPVFSKVMAGALRLMNVPPDNLPTATEQQQVNAAPA 559 (564)
T ss_dssp -----CHHHHTHHHHHHHHHHHHHHTTCCCCCC--------------
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
T ss_conf -8887655999999999999999766989876898763024137999