Query gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 817
No_of_seqs 233 out of 5297
Neff 7.0
Searched_HMMs 23785
Date Tue May 31 17:01:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780752.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fwm_A Penicillin-binding prot 100.0 0 0 1262.4 30.6 586 60-789 146-746 (751)
2 2jch_A Penicillin-binding prot 100.0 0 0 1271.1 23.3 611 34-786 14-688 (720)
3 2olv_A Penicillin-binding prot 100.0 0 0 1226.6 32.2 580 38-762 3-625 (669)
4 2bg1_A PBP1B, penicillin-bindi 100.0 0 0 750.8 25.3 442 195-788 4-464 (494)
5 2v2f_F Penicillin binding prot 100.0 0 0 608.7 23.3 355 269-761 4-390 (390)
6 2wad_A Penicillin-binding prot 100.0 0 0 548.0 12.5 521 53-740 61-679 (680)
7 1qme_A Penicillin-binding prot 100.0 0 0 531.4 19.1 440 142-736 67-571 (702)
8 3lo7_A PBPA, penicillin-bindin 100.0 0 0 514.9 18.2 389 209-739 13-483 (483)
9 2oqo_A Penicillin-binding prot 100.0 0 0 520.7 10.8 198 54-254 3-200 (200)
10 3hzs_A Monofunctional glycosyl 100.0 0 0 489.1 13.7 182 69-254 19-207 (209)
11 3oc2_A Penicillin-binding prot 100.0 0 0 482.4 18.5 282 440-759 231-559 (564)
12 3equ_A PBP-2, penicillin-bindi 100.0 0 0 463.4 18.8 264 440-744 223-534 (542)
13 1vqq_A Saupbp2A, penicillin-bi 100.0 0 0 420.3 13.9 268 440-740 322-644 (646)
14 1k38_A Penicillinase, beta-lac 100.0 1.1E-41 0 294.2 12.0 222 439-744 19-248 (254)
15 1k55_A Beta lactamase OXA-10; 100.0 1.6E-41 0 293.2 9.2 212 438-733 16-240 (246)
16 1xkz_A Regulatory protein BLAR 100.0 4.3E-41 1.4E-45 290.3 7.5 211 439-734 29-249 (255)
17 2iwb_A Methicillin resistance 100.0 8.8E-39 3.7E-43 274.9 12.0 212 439-734 22-243 (246)
18 1nrf_A Regulatory protein BLAR 100.0 6.8E-39 2.9E-43 275.6 10.8 212 439-734 33-254 (262)
19 3g4p_A Beta-lactamase OXA-24; 100.0 4.7E-39 2E-43 276.7 8.2 210 439-733 20-240 (244)
20 3hbr_A OXA-48; class D beta-la 100.0 2.8E-37 1.2E-41 264.9 11.6 213 438-734 39-261 (265)
21 3isg_A Penicillinase, beta-lac 100.0 1.1E-37 4.8E-42 267.5 7.6 215 439-734 15-249 (251)
22 2wuq_A BLAB, beta-lactamase re 99.9 2.8E-27 1.2E-31 198.5 5.2 235 439-706 20-283 (318)
23 2j9o_A TLL2115 protein; penici 99.2 1.1E-10 4.5E-15 88.4 11.0 199 439-707 34-249 (298)
24 1ghp_A Beta-lactamase, penicil 99.2 9.1E-11 3.8E-15 88.9 8.4 224 440-736 14-256 (258)
25 1m40_A TEM-1, beta-lactamase T 99.1 3.1E-10 1.3E-14 85.3 9.8 205 440-706 18-239 (263)
26 3lez_A Beta-lactamase; antibio 99.0 4.2E-09 1.8E-13 77.8 10.1 225 439-733 14-257 (260)
27 2cc1_A Beta-lactamase, penicil 98.9 6.2E-09 2.6E-13 76.7 9.6 225 440-735 17-258 (262)
28 2p74_A Beta-lactamase CTX-M-9A 98.9 1.4E-08 6.1E-13 74.3 10.6 203 440-706 19-239 (263)
29 1g6a_A Beta-lactamase PSE-4; c 98.9 1.1E-08 4.8E-13 75.0 9.5 204 440-706 22-242 (271)
30 1alq_A CP254 beta-lactamase; h 98.8 1.4E-08 5.7E-13 74.4 8.4 182 440-687 59-254 (266)
31 1n9b_A Penicillinase, beta-lac 98.8 2.2E-08 9.1E-13 73.1 8.8 204 440-706 18-239 (265)
32 2qpn_A Beta-lactamase GES-1; A 98.8 1.7E-08 6.9E-13 73.9 7.5 201 440-707 38-259 (287)
33 3p09_A Beta-lactamase; structu 98.7 1.2E-07 5.2E-12 68.1 11.0 204 441-707 39-261 (290)
34 1hzo_A Beta-lactamase; mixed a 98.7 2.3E-07 9.8E-12 66.2 10.5 204 440-706 20-240 (271)
35 1bue_A Protein (imipenem-hydro 98.7 3.1E-07 1.3E-11 65.4 11.0 204 440-706 18-240 (265)
36 1o7e_A L2 beta lactamase; hydr 98.6 6.3E-08 2.7E-12 70.0 6.8 203 440-706 30-251 (276)
37 2wk0_A Beta-lactamase; hydrola 98.6 1.7E-07 7.1E-12 67.2 9.0 200 440-708 18-238 (265)
38 3dw0_A Class A carbapenemase K 98.6 3.3E-07 1.4E-11 65.2 10.4 226 441-737 44-287 (294)
39 3c5a_A Class A carbapenemase K 98.6 3.6E-07 1.5E-11 65.0 10.5 205 440-707 18-240 (264)
40 3m6b_A Beta-lactamase, penicil 98.6 1.8E-07 7.6E-12 67.0 7.9 200 440-706 16-238 (265)
41 1w7f_A Beta-lactamase; hydrola 98.5 5.7E-07 2.4E-11 63.7 9.6 199 440-708 60-280 (307)
42 1bsg_A Beta lactamase, penicil 98.5 6.9E-07 2.9E-11 63.1 8.4 204 441-706 18-241 (266)
43 3cjm_A Putative beta-lactamase 98.3 1.1E-06 4.6E-11 61.8 6.3 191 441-706 52-253 (282)
44 3d0f_A Penicillin-binding 1 tr 98.1 2.8E-06 1.2E-10 59.1 4.7 102 323-437 1-106 (106)
45 1e25_A Extended-spectrum beta- 98.1 3.5E-06 1.5E-10 58.4 5.0 204 440-706 19-248 (282)
46 3mfd_A D-alanyl-D-alanine carb 97.3 0.00012 5.1E-09 48.2 2.8 129 442-592 11-155 (334)
47 1es5_A DD-transpeptidase; peni 96.8 0.00077 3.2E-08 42.9 3.7 134 441-594 9-167 (262)
48 2bcf_A Probable D-alanyl-D-ala 96.3 0.0043 1.8E-07 37.9 4.5 131 442-592 21-165 (276)
49 1z6f_A Penicillin-binding prot 95.8 0.0036 1.5E-07 38.4 2.4 135 437-591 13-172 (363)
50 2wad_A Penicillin-binding prot 95.5 0.0018 7.5E-08 40.5 -0.1 103 97-207 87-192 (680)
51 3ita_A D-alanyl-D-alanine carb 95.5 0.0065 2.7E-07 36.7 2.6 131 442-590 15-167 (352)
52 2pby_A Glutaminase; secsg, rik 95.4 0.13 5.5E-06 28.1 9.0 102 576-732 197-300 (308)
53 1xp4_A D-alanyl-D-alanine carb 95.3 0.0029 1.2E-07 39.0 0.3 113 437-566 10-140 (379)
54 3ih8_A Salt-tolerant glutamina 95.2 0.069 2.9E-06 29.9 7.2 105 576-735 196-302 (456)
55 3hun_A Penicillin-binding prot 95.2 0.0028 1.2E-07 39.1 0.1 111 442-566 72-197 (453)
56 3czd_A Glutaminase kidney isof 95.1 0.061 2.6E-06 30.3 6.7 102 576-732 201-304 (315)
57 3a3j_A PBP5; penicillin bindin 95.1 0.008 3.4E-07 36.1 2.1 131 442-589 11-159 (344)
58 1mki_A Probable glutaminase YB 95.0 0.16 6.8E-06 27.4 10.0 103 576-733 209-323 (330)
59 1tvf_A PBP4, penicillin bindin 94.3 0.0076 3.2E-07 36.3 0.5 110 443-566 37-161 (369)
60 1u60_A Probable glutaminase YB 93.8 0.13 5.5E-06 28.1 6.0 102 576-732 197-300 (310)
61 3a3d_A PBP4, penicillin-bindin 91.8 0.17 6.9E-06 27.4 4.2 67 527-593 275-356 (453)
62 2ex2_A Penicillin-binding prot 88.0 0.22 9.2E-06 26.6 2.3 65 528-592 279-359 (458)
63 1w79_A D-alanyl-D-alanine carb 87.1 0.45 1.9E-05 24.5 3.5 67 527-593 289-369 (489)
64 1w5d_A Penicillin-binding prot 86.2 0.57 2.4E-05 23.8 3.6 64 527-593 290-370 (462)
65 2wzx_A Beta-lactamase; inhibit 70.6 4.3 0.00018 18.0 7.5 22 578-599 226-247 (371)
66 2qz6_A Beta-lactamase; psychro 68.6 4.7 0.0002 17.7 6.9 21 578-598 221-241 (358)
67 1yqs_A D-alanyl-D-alanine carb 57.6 7 0.00029 16.6 3.1 83 441-540 25-113 (349)
68 3i7j_A Beta-lactamase MB2281C; 52.9 8.9 0.00037 15.9 4.9 135 441-597 15-169 (280)
69 2ffy_A Beta-lactamase; AMPC, d 52.6 9 0.00038 15.9 3.3 29 472-500 54-86 (358)
70 2k77_A Negative regulator of g 51.4 8.5 0.00036 16.0 2.7 35 80-114 32-69 (146)
71 3ozh_A Beta-lactamase/D-alanin 44.9 12 0.00049 15.1 4.4 27 574-600 224-252 (351)
72 1zkj_A CMY-10, extended-spectr 41.7 13 0.00055 14.8 4.6 76 449-538 35-116 (359)
73 2drw_A DAA, D-amino acid amida 37.5 15 0.00064 14.4 4.1 27 472-498 53-83 (363)
74 3hlc_A Transesterase, LOVD; al 35.8 16 0.00068 14.2 4.5 98 439-540 49-164 (432)
75 2dlx_A UBX domain-containing p 34.2 17 0.00072 14.0 2.3 21 442-462 104-124 (153)
76 1khy_A CLPB protein; alpha hel 32.4 17 0.0007 14.1 1.7 35 80-114 31-68 (148)
77 1ci9_A ESTB, protein (carboxyl 31.4 19 0.0008 13.7 3.9 90 441-541 37-133 (392)
78 1l0o_C Sigma factor; bergerat 24.5 13 0.00054 14.8 0.0 54 160-223 26-79 (243)
79 2fbh_A Transcriptional regulat 23.7 6.2 0.00026 16.9 -1.7 72 176-247 10-86 (146)
80 3deu_A Transcriptional regulat 23.6 7.2 0.0003 16.5 -1.4 51 198-248 50-103 (166)
81 2qmi_A PBP related beta-lactam 22.9 27 0.0011 12.7 4.1 86 441-541 21-113 (447)
82 1rqt_A L8, 50S ribosomal prote 21.2 29 0.0012 12.5 1.3 12 162-173 2-13 (37)
83 2i99_A MU-crystallin homolog; 20.6 30 0.0012 12.4 2.6 25 435-459 87-111 (312)
84 2nz7_A NOD1, caspase recruitme 20.5 30 0.0013 12.4 2.5 25 231-255 30-54 (98)
No 1
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A*
Probab=100.00 E-value=0 Score=1262.40 Aligned_cols=586 Identities=29% Similarity=0.457 Sum_probs=536.6
Q ss_pred CCEEEEEE---CCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 94966661---256046417996978885454332146113387379999999999863204788677611479998888
Q gi|254780752|r 60 GALMAEYA---RENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKN 136 (817)
Q Consensus 60 G~~i~~~~---~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn 136 (817)
..+|+.++ .|+|++|++++||++|++||||+||+|||+|+|||++||+||++.||+ +|+.+|||||||||||||
T Consensus 146 p~~i~~~~~~~~e~R~~v~~~~iP~~l~~A~la~ED~~Fy~H~Gvd~~~i~RA~~~nl~---~g~~~qGgSTiTQQl~Kn 222 (751)
T 3fwm_A 146 PRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLT---AGRTVQGASTLTQQLVKN 222 (751)
T ss_dssp CCEEEEECCTTSEECCCCCSTTSCHHHHHHHTTTC------------------------------------CHHHHHHHH
T ss_pred CHHEEEECCCCCCCEEECCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCHHHHHHHH
T ss_conf 23505642688873567176996999985502052574135798099999999999711---788477714099999876
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHCCCHHHCCCCCEEEEEEECC
Q ss_conf 77088832999999999999998660799999997201426743----31099999987354234403027125444015
Q gi|254780752|r 137 FLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN----SYGIASAALTYFNKSVSELTIEEAAYLAALPK 212 (817)
Q Consensus 137 ~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~----~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~ 212 (817)
+|+++|||+.||++|+++|++||++||||||||+|||.||||++ +|||++||++||||+++|||++|||+||||+|
T Consensus 223 ~~l~~ert~~RK~~E~~~A~~lE~~ysK~eILe~YLN~vy~G~~~~~~i~Gi~~Aa~~YFgk~~~~L~l~e~A~Lagl~k 302 (751)
T 3fwm_A 223 LFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVK 302 (751)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTTCEEEEETTEEEESHHHHHHHHTSSCGGGCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCCHHHHHHEEECC
T ss_conf 11689888899999999999999986999999997632636789767404299999988299978948315377653267
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCC
Q ss_conf 76433211111466789988876665420111256888753011124454322234571567998853110012433125
Q gi|254780752|r 213 GPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYE 292 (817)
Q Consensus 213 ~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~e~V~~~l~~~~ge~~l~~ 292 (817)
+||.|||++||+++++|||+||++|+++|+||++||++|+++|+.+... ......+|||+++|++||.+.++++.++.
T Consensus 303 ~Ps~y~P~~~p~~a~~Rr~~VL~~m~~~g~It~~~~~~a~~~pl~~~~~--~~~~~~~p~f~~~v~~el~~~~~~~~~~~ 380 (751)
T 3fwm_A 303 GASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPR--GGVISPQPAFMQLVRQELQAKLGDKVKDL 380 (751)
T ss_dssp CTTTSCTTTCSHHHHHHHHHHHTC-----------------------------CCSSSHHHHHHHHHHHHHHHTTSSTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8876786547899999889999888861556699999997373324555--55566566899999999987515531246
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 73289852488898999999998767654443210000001211248877863332013355541047652144026765
Q gi|254780752|r 293 DGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGI 372 (817)
Q Consensus 293 ~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 372 (817)
+|++||||||+++|++||+++.+.+..++.+..
T Consensus 381 ~Gl~I~TTLD~~lQ~~ae~al~~~l~~~~~~~~----------------------------------------------- 413 (751)
T 3fwm_A 381 SGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRK----------------------------------------------- 413 (751)
T ss_dssp SSCEEEECCCHHHHHHHHHHHHHHHHHHHHHHT-----------------------------------------------
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------------------
T ss_conf 882798216889999999988740432122345-----------------------------------------------
Q ss_pred ECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCC
Q ss_conf 20334431000024442348889665200112233321000013646310123566515775225553116640656666
Q gi|254780752|r 373 RPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGR 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~ 452 (817)
.+..|+|+|+|||+||+
T Consensus 414 ---------------------------------------------------------------~~~~~gA~Vv~Dp~TGe 430 (751)
T 3fwm_A 414 ---------------------------------------------------------------LSDLETAIVVVDRFSGE 430 (751)
T ss_dssp ---------------------------------------------------------------CSCCEEEEEEEETTTCB
T ss_pred ---------------------------------------------------------------CCCCCEEEEEEECCCCC
T ss_conf ---------------------------------------------------------------66663589998689997
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCCCCCCEEEEECC-CCEEEEEECCCC--CCCHH
Q ss_conf 11787213234443320012335665310000127887402--46654456523788037-852666412765--44225
Q gi|254780752|r 453 ILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG--YTPASVIMDAPIEVVSR-GKIWKPENYSKN--FSGAS 527 (817)
Q Consensus 453 IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G--~tp~t~~~D~p~~~~~~-~~~~~p~N~~~~--~~G~i 527 (817)
|+|||||++|+.+.||||+++.|||||+||||+|++||++| +++++.+.|.|+.+..+ +..|+|+|+++. ++|.|
T Consensus 431 IlAmvGg~~~~~~~fNra~~a~r~pGSt~KP~~y~aAL~~g~~~~~~t~~~D~p~~~~~~~g~~~~p~n~d~~~~~~G~v 510 (751)
T 3fwm_A 431 VRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRV 510 (751)
T ss_dssp EEEEECSSSCSSCSSCHHHHCCEECGGGGHHHHHHHHHTCTTTCCTTCEEECSCCCEECSSSCEECCCCTTSCCCTTSEE
T ss_pred EEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf 89996444234455550001344555545417899999738874453374267637757998531786677665787623
Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf 666666530440225887625972352110135565-5567665634451000037767432201574403544666764
Q gi|254780752|r 528 TLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIY-DKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRI 606 (817)
Q Consensus 528 tl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~-~~~~~~~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI 606 (817)
++++||++|+|++++++++++|++++.+++++|||. ....+.++++||+.++||+|||+||++|||+|++++||+|++|
T Consensus 511 ~l~~AL~~S~N~~~v~l~~~lG~~~~~~~~~k~Gi~~~~~~~~ps~~lG~~~vTPlqmA~aYatiANgG~~~~P~~I~~I 590 (751)
T 3fwm_A 511 MLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSV 590 (751)
T ss_dssp EHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHHTCCGGGCCCSGGGGGTCCEECHHHHHHHHHHHHTTSEECCCBSEEEE
T ss_pred EHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEE
T ss_conf 14334340235999999886280899999998499855678980665388625788988899999749858356899999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEH--HCCCCCCEEEEECCC
Q ss_conf 102443013358532355666666655455467554353589999999999999873480432--105996046760467
Q gi|254780752|r 607 QNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATG--KVRLNRPVAGKTGTT 684 (817)
Q Consensus 607 ~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~--a~~~~~~iaGKTGTt 684 (817)
+|++|++|+++.+ ..++|+|+++|++|++||+.||++|||++ +...++++|||||||
T Consensus 591 ~d~dG~vi~~~~~---------------------~~~~vis~~tA~~v~~~M~~VV~~GTg~~~~~~~~~~~vAGKTGTT 649 (751)
T 3fwm_A 591 IAEDGKVLYQSFP---------------------QAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTT 649 (751)
T ss_dssp ECTTSCEEEECCC---------------------CCEECSCHHHHHHHHHHHHHHHHTSTTHHHHHHSGGGCCEEEEEEC
T ss_pred ECCCCCEEECCCC---------------------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCC
T ss_conf 9899988703689---------------------7763689999999999999875556730011238997599988637
Q ss_pred CCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCC
Q ss_conf 89702279845698799999826689827898644212179999999999748983006797771699840322775889
Q gi|254780752|r 685 SSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKK 764 (817)
Q Consensus 685 ~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG~la~~ 764 (817)
|+++|+||+||+|+|+++||||+|+++++ +.+|++.|+|||++||+.+ ...+.+|++|+||+.+.||..+|.+
T Consensus 650 ~~~rDaWFvG~tp~~~~~VWvG~Ddn~~~--~~tG~~~Aapiw~~~m~~~--~~~~~~~~~P~~i~~~~i~~~~g~~--- 722 (751)
T 3fwm_A 650 NNNVDTWFAGIDGSTVTITWVGRDNNQPT--KLYGASGAMSIYQRYLANQ--TPTPLNLVPPEDIADMGVDYDGNFV--- 722 (751)
T ss_dssp GGGSEEEEEEECSSEEEEEEEECTTCCCC--CCCTTHHHHHHHHHHHHSS--CCCCCCCCCCTTEEEEEECTTSCEE---
T ss_pred CCCCEEEEEECCCCEEEEEEEECCCCCCC--CCCHHHHHHHHHHHHHHCC--CCCCCCCCCCCCEEEEEECCCCCCC---
T ss_conf 99705999985899699999977899978--7844599999999999607--7888788998980588875887867---
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9976089953178999865677776
Q gi|254780752|r 765 GDPDTIIEAFKPGTGPAETYTVIDE 789 (817)
Q Consensus 765 ~~~~~~~e~f~~gt~P~~~~~~~~~ 789 (817)
|+.+..++|+.|++|++.|..++.
T Consensus 723 -~~~~~~~~~~~~~~p~~~c~~~~~ 746 (751)
T 3fwm_A 723 -CSGGMRILPVWTSDPQSLCQQSEM 746 (751)
T ss_dssp -SSCCSEEEEEECSCTTHHHHHHTT
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -999844387579998654567888
No 2
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*
Probab=100.00 E-value=0 Score=1271.11 Aligned_cols=611 Identities=25% Similarity=0.343 Sum_probs=527.5
Q ss_pred HHCCCCCHHHHHCCC--CCCCEEEECCCCCEEEEEEC-CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 704698978851247--78877999078949666612-560464179969788854543321461133873799999999
Q gi|254780752|r 34 ISQNLPDYAALNSYS--PAVTTRIHAGNGALMAEYAR-ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAV 110 (817)
Q Consensus 34 ~~~~lP~~~~l~~~~--~~~~t~iyd~dG~~i~~~~~-~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~ 110 (817)
....+|+.++|.+.. ++++|+|||+||++|++++. +||++|++||||++|++||||+||+|||+|+|||++||+||+
T Consensus 14 ~~~~~p~~~~l~~~~~~~~~~s~i~~~dG~~i~~~~~~~~R~~v~~~~ip~~l~~A~va~ED~rFy~H~GvD~~gi~rA~ 93 (720)
T 2jch_A 14 DKVRVPQTEELVNQVKDISSISEITYSDGTVIASIESDMLRTSISSEQISENLKKAIIATEDEHFKEHKGVVPNAVIPAT 93 (720)
T ss_dssp ---------------------CEEECTTSCEEEEC---------------------------------------------
T ss_pred HCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCEEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 60789997997412237664329996799599886067876784479879999856545862864557888999999999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC-----CCCCCHH
Q ss_conf 99863204788677611479998888770888329999999999999986607999999972014267-----4331099
Q gi|254780752|r 111 LHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFG-----FNSYGIA 185 (817)
Q Consensus 111 ~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G-----~~~yGv~ 185 (817)
+.|++ +|+.+|||||||||||||+|+++|+|+.||++||++|++||++||||||||+|||+|||| +|+|||+
T Consensus 94 ~~n~~---~~~~~qGgSTITqQlakn~~l~~~~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~i~~G~~~~g~~~yGv~ 170 (720)
T 2jch_A 94 LGKFV---GLGSSSGGSTLTQQLIKQQVVGDAPTLARKAAEIVDALALERAMNKDEILTTYLNVAPFGRNNKGQNIAGAR 170 (720)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH---CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 99974---699888726799999865525887879999999999999999759999999986460027775778516899
Q ss_pred HHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHH---------HHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 99998735423440302712544401576433211111466---------789988876665420111256888753011
Q gi|254780752|r 186 SAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAA---------IARRNWVIDRMEENGYISQEQALVAKQKPL 256 (817)
Q Consensus 186 aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a---------~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i 256 (817)
+||++||||+++||||+|||+||||||+|+.|||++||+++ ++|||+||++|+++|+||++||++|+++|+
T Consensus 171 aAA~~YFgk~~~~Ltl~EaA~Lagl~~~Ps~y~P~~~p~~~~~~~~~~~~~~Rr~~VL~~M~~~g~It~~e~~~a~~~~l 250 (720)
T 2jch_A 171 QAAEGIFGVDASQLTVPQAAFLAGLPQSPITYSPYENTGELKSDEDLEIGLRRAKAVLYSMYRTGALSKDEYSQYKDYDL 250 (720)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 99999749993779999999971725799877622397886431105777788989999998705555999997423540
Q ss_pred CCCCCCCCCCCC---CCHHHHHHH---------------------HH----HHHHCCCHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 124454322234---571567998---------------------85----31100124331257328985248889899
Q gi|254780752|r 257 KITIKQRRSHLF---GSEYFAEEV---------------------RR----QLIDRYGEKALYEDGLSIRTSLDPQLQLY 308 (817)
Q Consensus 257 ~~~~~~~~~~~~---~a~yf~e~V---------------------~~----~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~ 308 (817)
...+.+...... ...|++... ++ .+.+.+..+.+.++|++|+||||+++|++
T Consensus 251 ~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~~I~tTlD~~lQ~~ 330 (720)
T 2jch_A 251 KQDFLPSGTVTGISQDYLYFTTLAEAQERMYDYLAQRDNVSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSA 330 (720)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHTTTSSCCC------CCCTHHHHHHHHHHHHSCCEEEECCCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 22026543323223452123379888875545555403300799999999999877778888608807998415688899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCC
Q ss_conf 99999987676544432100000012112488778633320133555410476521440267652033443100002444
Q gi|254780752|r 309 ARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKK 388 (817)
Q Consensus 309 Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
+++++.+.+..++.
T Consensus 331 ae~al~~~~~~~~~------------------------------------------------------------------ 344 (720)
T 2jch_A 331 MQSAVADYGYLLDD------------------------------------------------------------------ 344 (720)
T ss_dssp HHHHHHHHGGGGCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_conf 99999998765201------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCCC
Q ss_conf 23488896652001122333210000136463101235665157752255531166406566661178721323444332
Q gi|254780752|r 389 GIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFN 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~N 468 (817)
..+.+|+|+|+|||+||+|||||||++|..++||
T Consensus 345 ----------------------------------------------~~~~~~~a~Vv~Dp~TG~IlAmvGg~~~~~~~~n 378 (720)
T 2jch_A 345 ----------------------------------------------GTGRVEVGNVLMDNQTGAILGFVGGRNYQENQNN 378 (720)
T ss_dssp ----------------------------------------------SSSCCEEEEEEEETTTCBEEEEECCSCTTTCCCC
T ss_pred ----------------------------------------------CCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf ----------------------------------------------2412036799998899978898427850011232
Q ss_pred CCCCCCCCCCCCCHHHH-HHHHHHCCC-CCCCCCCCCEEEEECCCCEEEEEEC-CCCCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 00123356653100001-278874024-6654456523788037852666412-76544225666666530440225887
Q gi|254780752|r 469 RSTQAMRQPGSCFKPIV-YAAALDSGY-TPASVIMDAPIEVVSRGKIWKPENY-SKNFSGASTLRFGLEKSRNLMTVRLA 545 (817)
Q Consensus 469 rA~~~~rqpGSt~KP~v-y~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p~N~-~~~~~G~itl~~Al~~S~N~~~v~l~ 545 (817)
||+|+.|||||+||||+ |++|||+|+ ++++++.|.|..+.+ |.|.|+ +++++|.++|++||++|||++++++.
T Consensus 379 ~a~~a~rqpGSs~Kp~~~yaaAle~G~~~~~t~~~d~~~~~~~----~~~~~~~~~~~~G~vtl~~Al~~S~Nv~a~~~~ 454 (720)
T 2jch_A 379 HAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILSNYPTNFAN----GNPIMYANSKGTGMMTLGEALNYSWNIPAYWTY 454 (720)
T ss_dssp TTTTCCBCCGGGGHHHHTHHHHHHTTSCCTTCEEECSCCBCTT----SCBCCBTTBCCCSEEEHHHHHHHTCSHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
T ss_conf 2002444401322025779999864999986177327833346----885314666678733288998846774589999
Q ss_pred HHCCCCE--EEEEECCCCCCCCCCCCCCCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 6259723--5211013556555676656344510-000377674322015744035446667641024430133585323
Q gi|254780752|r 546 HNMGMTV--VADYAENFGIYDKMLPVLPMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRIC 622 (817)
Q Consensus 546 ~~~G~~~--~~~~~~~~Gi~~~~~~~~s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~ 622 (817)
..+|... ...++++||+..+..+..+++||++ ++||||||+||++|||+|++++||+|++|+|++|++|+++++
T Consensus 455 ~~~~~~g~~~~~~~~~~G~~~~~~~~~slalGg~~~vTplqma~aYat~ANgG~~~~P~~I~~I~d~~G~vi~~~~~--- 531 (720)
T 2jch_A 455 RMLRENGVDVKGYMEKMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGRVVYEYQD--- 531 (720)
T ss_dssp HHHHHTTCCHHHHHHHTTCCCSCCCCTTGGGTTTCCBCHHHHHHHHHHHHTTTEECCCBSEEEEECTTSCEEEECCC---
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEECCCC---
T ss_conf 98501115699999973998655565332341223420034221300311498781568999898799978602688---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHC---------CCCCCEEEEECCCCCCCCEEEE
Q ss_conf 5566666665545546755435358999999999999987348043210---------5996046760467897022798
Q gi|254780752|r 623 DDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKV---------RLNRPVAGKTGTTSSYRDTWFI 693 (817)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~---------~~~~~iaGKTGTt~~~~D~Wfv 693 (817)
.++||+|+++|++|++||++||+.||++.+. ..++++||||||||+++|+||+
T Consensus 532 ------------------~~~~vis~~~A~~~~~~L~~vv~~gt~~~~~~~~~~~~~~~~~~~vAGKTGTt~~~~DaWFv 593 (720)
T 2jch_A 532 ------------------KPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTNQDENMWLM 593 (720)
T ss_dssp ------------------CCEESSCHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHCHHHHTSCCEEEEEECTTSCEEEEE
T ss_pred ------------------CCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEE
T ss_conf ------------------75566698999999999999987165411014666546555798625770478985348999
Q ss_pred EECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCCCCCEEEEECHHHCCCCCCCCCCE
Q ss_conf 45698799999826689827898644212179999999999748----98300679777169984032277588999760
Q gi|254780752|r 694 GYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKN----IPSSRFVAPPGMSLIPINKWTGMLSKKGDPDT 769 (817)
Q Consensus 694 G~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~----~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~ 769 (817)
||||+|+++||||||++++|+. .+|++.++|+|+++|+.+++. .|.++|+.|++|+.+.||..||++|++.|++.
T Consensus 594 Gytp~~~~~VWvG~d~~~~~~~-~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~f~~P~~vv~~~v~~~tG~~~~~~~~~~ 672 (720)
T 2jch_A 594 LSTPRLTLGGWIGHDDNHSLSQ-QAGYSNNSNYMAHLVNAIQQASPSIWGNERFALDPSVVKSEVLKSTGQKPGKVSVEG 672 (720)
T ss_dssp EECSSEEEEEEEECTTCCCCCT-TTTTTHHHHHHHHHHHHHHHTSTTTTCSCCCCCCTTCEEEEEETTTSSBCEEECTTS
T ss_pred EECCCEEEEEEEECCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 9729907999998899985767-647542599999999999873714478678899998389997733277798889887
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 89953178999865677
Q gi|254780752|r 770 IIEAFKPGTGPAETYTV 786 (817)
Q Consensus 770 ~~e~f~~gt~P~~~~~~ 786 (817)
.|+|..|++|++++..
T Consensus 673 -~~~~~~g~~~t~~~~~ 688 (720)
T 2jch_A 673 -KEVEVTGSTVTSYWAN 688 (720)
T ss_dssp -SCEEECCCEEEEEESS
T ss_pred -EEECCCCCCEEECCCC
T ss_conf -2651799834220036
No 3
>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme fold; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*
Probab=100.00 E-value=0 Score=1226.57 Aligned_cols=580 Identities=26% Similarity=0.399 Sum_probs=503.7
Q ss_pred CCCHHHHHCCCCCCCEEEECCCCCEEEEEEC-CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9897885124778877999078949666612-560464179969788854543321461133873799999999998632
Q gi|254780752|r 38 LPDYAALNSYSPAVTTRIHAGNGALMAEYAR-ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRN 116 (817)
Q Consensus 38 lP~~~~l~~~~~~~~t~iyd~dG~~i~~~~~-~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~ 116 (817)
.|++++++ .+.+.+|+|||+||++|++++. +||.+|+++|||++|++||||+||+|||+|+|||++||+||++.||+
T Consensus 3 ~p~~~~~~-~~~p~~s~iyd~~G~~i~~~~~~~~r~~v~~~~ip~~~~~A~ia~ED~~Fy~H~GvD~~gi~RA~~~nl~- 80 (669)
T 2olv_A 3 APAFTEAK-LQDPIPAKIYDKNGELVKTLDNGQRHEHVNLKDVPKSMKDAVLATEDNRFYEHGALDYKRLFGAIGKNLT- 80 (669)
T ss_dssp ------CC-CCCCBCCEEECTTSCEEEECSTTCSBCCCCSTTSCHHHHHHHHHHHCTTCSSCSSSCSHHHHHHHTC----
T ss_pred CCCCCHHH-CCCCCCEEEEECCCCEEHHCCCCCCEEECCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-
T ss_conf 99987787-5799754999799969331136667236486987999997676786286545888699999999999985-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCH
Q ss_conf 04788677611479998888770888329999999999999986607999999972014267433109999998735423
Q gi|254780752|r 117 ISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSV 196 (817)
Q Consensus 117 ~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~ 196 (817)
+|+.+|||||||||||||+|+++|||+.||++||++|++||++||||||||+|||+||||+|+|||+|||++||||++
T Consensus 81 --~g~~~qGgSTITqQlvkn~~l~~~~t~~RKi~E~~~A~~le~~~sK~eILe~YLN~i~~G~~~yGi~aAa~~YF~k~~ 158 (669)
T 2olv_A 81 --GGFGSEGASTLTQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYSDGVTGIKAAAKYYFNKDL 158 (669)
T ss_dssp --------CCCCHHHHHHHTTTCCSCCTTTHHHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTCBSHHHHHHHHHCCCS
T ss_pred --CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCH
T ss_conf --599788603599998764335877769999999999999998709999999999760366753339999998855274
Q ss_pred HHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC---------CCC
Q ss_conf 44030271254440157643321111146678998887666542011125688875301112445432---------223
Q gi|254780752|r 197 SELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRR---------SHL 267 (817)
Q Consensus 197 ~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~---------~~~ 267 (817)
+||||+|||+||||+|+|+.|||++||+++++|||+||++|+++|+||++||++|+++|+........ ...
T Consensus 159 ~~Ltl~EaA~Lagl~~~Ps~y~P~~~~~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (669)
T 2olv_A 159 KDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQWEDAKKIDLKANLVNRTPEERQNIDTNQD 238 (669)
T ss_dssp TTCCHHHHHHHHHGGGSHHHHCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTTSCTTTTCCCCCHHHHSCCCCCTT
T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCHHHHCCCCCCCC
T ss_conf 33799999998620469975666567899999988998776550676699999976072012102457455214332220
Q ss_pred CCCHHHHHHHHHHHHHCCC-----HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHH
Q ss_conf 4571567998853110012-----43312573289852488898999999998767654443210000001211248877
Q gi|254780752|r 268 FGSEYFAEEVRRQLIDRYG-----EKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNT 342 (817)
Q Consensus 268 ~~a~yf~e~V~~~l~~~~g-----e~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~ 342 (817)
...+||+++|+++|.+..+ ...++++|++||||||+++|+.+++++.+....
T Consensus 239 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~G~~I~TTlD~~~Q~~~~~~~~~~~~~----------------------- 295 (669)
T 2olv_A 239 SEYNSYVNFVKSELMNNKAFKDENLGNVLQSGIKIYTNMDKDVQKTLQNDVDNGSFY----------------------- 295 (669)
T ss_dssp GGGHHHHHHHHHHHHSSTTTTSSCHHHHTTBTCEEEESCCHHHHHHHHHHHHHCCCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCC-----------------------
T ss_conf 336899999999997631200344667862685899952222323555554432203-----------------------
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86333201335554104765214402676520334431000024442348889665200112233321000013646310
Q gi|254780752|r 343 LASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVI 422 (817)
Q Consensus 343 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i 422 (817)
T Consensus 296 -------------------------------------------------------------------------------- 295 (669)
T 2olv_A 296 -------------------------------------------------------------------------------- 295 (669)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHCCC-CCCCCC
Q ss_conf 1235665157752255531166406566661178721323444332001233566531000012-78874024-665445
Q gi|254780752|r 423 YVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVY-AAALDSGY-TPASVI 500 (817)
Q Consensus 423 ~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy-~~Ale~G~-tp~t~~ 500 (817)
.....|+|+|+|||+||+|+||+||++|..+.+|+++++.||||||||||+| ++++|.+. .+.+.+
T Consensus 296 ------------~~~~~~~a~vv~d~~TG~IlAmvgg~~~~~~~~~~~~~~~r~pGStfKp~~~~aa~~e~~~~~~~~~~ 363 (669)
T 2olv_A 296 ------------KNKDQQVGATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAI 363 (669)
T ss_dssp ------------SSTTEEEEEEEEETTTCBEEEEESSTTCCTTTSCCTTSSCEECGGGGHHHHTHHHHHHHHCCCTTBEE
T ss_pred ------------CCCCCCEEEEEEECCCCCEEEEECCCCCHHCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf ------------56564168999978999189996277410003305452204566433312454444226643222113
Q ss_pred CCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHH----CCCCEEEEEECCCCCCCCCCCCC--CCCC
Q ss_conf 65237880378526664127654422566666653044022588762----59723521101355655567665--6344
Q gi|254780752|r 501 MDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHN----MGMTVVADYAENFGIYDKMLPVL--PMSL 574 (817)
Q Consensus 501 ~D~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~----~G~~~~~~~~~~~Gi~~~~~~~~--s~al 574 (817)
.|.+.... ..|+|+||+++++|.+++++||++|||+++|+++.. +|.+.+.+++.+|||..+....+ ++++
T Consensus 364 ~~~~~~~~---~~~~~~N~~~~~~G~vtl~~Al~~S~N~~av~l~~~lg~~~g~~~~~~~~~~~Gi~~~~~~~~~~~lg~ 440 (669)
T 2olv_A 364 QDESSYQV---DGSTFRNYDTKSHGTVSIYDALRQSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGG 440 (669)
T ss_dssp ECCSCEES---SSCEECCSSCSCCCEEEHHHHHHTTCHHHHHHHHHHHHHHTCTTHHHHHHHTTTCCCSSCCCHHHHTTC
T ss_pred CCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
T ss_conf 46665434---676543688876675489999874862899999999988764789999999809995234674010357
Q ss_pred CCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHH
Q ss_conf 51000037767432201574403544666764102443013358532355666666655455467554353589999999
Q gi|254780752|r 575 GAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQI 654 (817)
Q Consensus 575 G~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~ 654 (817)
|+.++||||||+||++|||+|++++||+|++|+|++|++|+... .++||+|+++|++|
T Consensus 441 g~~~vtplqma~ayat~ANgG~~~~P~~I~~I~d~~G~~i~~~~----------------------~~~~vis~~~a~~v 498 (669)
T 2olv_A 441 SASEFSPTQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDH----------------------TSHKAMSDYTAYML 498 (669)
T ss_dssp TTCEECHHHHHHHHHHHHTTSEEECCBCEEEEECTTSCEEECCC----------------------CEEECSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEECCCC----------------------CCCCCCCHHHHHHH
T ss_conf 63324688999999998629935156799888879999860677----------------------65556799999999
Q ss_pred HHHHHHHHH-CCCEEHHCCCCCCEEEEECC--------------CCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCC--
Q ss_conf 999999873-48043210599604676046--------------7897022798456987999998266898278986--
Q gi|254780752|r 655 TSMLEGVIK-HGTATGKVRLNRPVAGKTGT--------------TSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHA-- 717 (817)
Q Consensus 655 ~~~L~~vv~-~GTg~~a~~~~~~iaGKTGT--------------t~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~-- 717 (817)
++||++||+ .||++++...++++|||||| ||+++|+||+||+|+|+++||||||++++++.+.
T Consensus 499 ~~~L~~vv~~~Gt~~~~~~~g~~vaGKTGTa~~~~~~~~~~~~~tn~~~DaWFvG~tP~~~~~VWvG~d~~~~~~~~~~~ 578 (669)
T 2olv_A 499 AEMLKGTFKPYGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGFTPQYTMSVWMGFSKVKQYGENSFV 578 (669)
T ss_dssp HHHHGGGSSTTSTTTTCCCSSCCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEECSSEEEEEEEEESSCCGGGTTSEE
T ss_pred HHHHHCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 99854124788772321589984279801677577676545567888640799996799689999824888766767766
Q ss_pred --CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEE-EECHHHCCCC
Q ss_conf --44212179999999999748983006797771699-8403227758
Q gi|254780752|r 718 --TGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLI-PINKWTGMLS 762 (817)
Q Consensus 718 --~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~-~i~~~sG~la 762 (817)
+|+..++|||++||+++ .+.|.++|+.|++|... ..|..+|..+
T Consensus 579 ~~~g~~~~~~iw~~~m~~l-~~~~~~~f~~P~~v~~~~~~~~~~g~~~ 625 (669)
T 2olv_A 579 GHSQQEYPQFLYENVMSKI-SSRDGEDFKRPSSVSGSIPSINVSGSQD 625 (669)
T ss_dssp SHHHHTHHHHHHHHHHHHH-CCCSCCCCCCCSSEEEETTEEEETTCCC
T ss_pred CCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7642178999999999997-5799667999998567887655688778
No 4
>2bg1_A PBP1B, penicillin-binding protein 1B; peptidoglycan, peptidoglycan synthesis multifunctional enzyme, cell WALL; 1.9A {Streptococcus pneumoniae} SCOP: e.3.1.1 PDB: 2xd5_A* 2uwy_A* 2xd1_A* 2uwx_A* 2fff_B
Probab=100.00 E-value=0 Score=750.84 Aligned_cols=442 Identities=21% Similarity=0.294 Sum_probs=370.6
Q ss_pred CHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 23440302712544401576433211111466789988876665420111256888753011124454322234571567
Q gi|254780752|r 195 SVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFA 274 (817)
Q Consensus 195 ~~~dLtl~EaA~LAgi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a~yf~ 274 (817)
+++|||++|+|+||||+++|++++|+.+++.+..||++|+..|.+++.....++... ...+.. .++.
T Consensus 4 svseLt~~eaa~lA~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~ 70 (494)
T 2bg1_A 4 SISEITYSDGTVIASIESDMLRQDFLPSGTVTGISQDYLYFTTLAEAQERMYDYLAQ-RDNVSA------------KELK 70 (494)
T ss_dssp ----CCC-----------------------------CHHHHHHHHHHHHHHHHHHHH-HTTCCT------------TTTS
T ss_pred CHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHH------------HHHH
T ss_conf 847788999998855743411058877867887755189999999999888887764-144106------------7777
Q ss_pred HHHHHHHHHCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99885311001243312573289852488898999999998767654443210000001211248877863332013355
Q gi|254780752|r 275 EEVRRQLIDRYGEKALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPE 354 (817)
Q Consensus 275 e~V~~~l~~~~ge~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (817)
.....+....+.++.|+++||+||||||+++|++||+++.+.+..++.
T Consensus 71 ~~~~~~~~~~~~~~~l~~gGl~I~TTiD~~lQ~~ae~al~~~~~~~~~-------------------------------- 118 (494)
T 2bg1_A 71 NEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDD-------------------------------- 118 (494)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEECCCHHHHHHHHHHHHHHGGGGCC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_conf 778888899989999981990899671889999999877666554105--------------------------------
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 54104765214402676520334431000024442348889665200112233321000013646310123566515775
Q gi|254780752|r 355 WDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLR 434 (817)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~ 434 (817)
T Consensus 119 -------------------------------------------------------------------------------- 118 (494)
T 2bg1_A 119 -------------------------------------------------------------------------------- 118 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred ECCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHCCC-CCCCCCCCCEEEEECCCC
Q ss_conf 225553116640656666117872132344433200123356653100001-278874024-665445652378803785
Q gi|254780752|r 435 QIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIV-YAAALDSGY-TPASVIMDAPIEVVSRGK 512 (817)
Q Consensus 435 ~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~v-y~~Ale~G~-tp~t~~~D~p~~~~~~~~ 512 (817)
....+|+|+|+|||+||+|||||||++|..++||||+|+.||||||||||+ |++|||+|+ ++.+++.|.|..+.+
T Consensus 119 ~~~~~~~a~Vv~d~~TG~IlAmvgg~~y~~~~~Nra~~~~rqPGStfKP~v~yaaAle~g~~~~~t~~~d~p~~~~~--- 195 (494)
T 2bg1_A 119 GTGRVEVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILSNYPTNFAN--- 195 (494)
T ss_dssp SSSSCEEEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHHTTSCCTTCEEECSCCBCTT---
T ss_pred CCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECC---
T ss_conf 67761599999989999099999898999776567570886872239999999999976999975555788721136---
Q ss_pred EEEEEEC-CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCE--EEEEECCCCCCCCCCCCCCCCCCCC-EEHHHHHHHHH
Q ss_conf 2666412-765442256666665304402258876259723--5211013556555676656344510-00037767432
Q gi|254780752|r 513 IWKPENY-SKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTV--VADYAENFGIYDKMLPVLPMSLGAG-ETTVLRMVSAY 588 (817)
Q Consensus 513 ~~~p~N~-~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~--~~~~~~~~Gi~~~~~~~~s~alG~~-~vtpl~la~ay 588 (817)
|.|.|+ ++.++|.+++++||++|||++++++.+.+|... ...++++||+..+.....++++|.. ++||+|||+||
T Consensus 196 -~~~~~~~~~~~~G~vtl~~al~~S~Ni~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~a~Gg~~~vTplqma~ay 274 (494)
T 2bg1_A 196 -GNPIMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYMEKMGYEIPEYGIESLPMGGGIEVTVAQHTNGY 274 (494)
T ss_dssp -SCBCCBTTBCCCCEEEHHHHHHHTCSHHHHHHHHHHHHTTCCHHHHHHHTTCCCSCCCCTTGGGTTTCCBCHHHHHHHH
T ss_pred -CCCEECCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHH
T ss_conf -6742446787874468999986374618888898854442433444413577887666221001687554206888999
Q ss_pred HHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 20157440354466676410244301335853235566666665545546755435358999999999999987348043
Q gi|254780752|r 589 AVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTAT 668 (817)
Q Consensus 589 a~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~ 668 (817)
++|||+|++++||+|++|+|++|++|+++++ ..+||+|+++|++|++||++||+.|||+
T Consensus 275 at~AN~G~~~~P~~i~~i~d~~G~~i~~~~~---------------------~~~~v~s~~~a~~~~~~L~~vv~~gt~~ 333 (494)
T 2bg1_A 275 QTLANNGVYHQKHVISKIEAADGRVVYEYQD---------------------KPVQVYSKATATIMQGLLREVLSSRVTT 333 (494)
T ss_dssp HHHHTTTEECCCBSEEEEECTTSCEEEECCC---------------------CCEECSCHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHCCEECCCEEEEEEECCCCCCCCCCCC---------------------CCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9997298252545654588899987234578---------------------7401478889999999999987224330
Q ss_pred HH---------CCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---
Q ss_conf 21---------059960467604678970227984569879999982668982789864421217999999999974---
Q gi|254780752|r 669 GK---------VRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALK--- 736 (817)
Q Consensus 669 ~a---------~~~~~~iaGKTGTt~~~~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~--- 736 (817)
.+ ...++++|||||||++++|+||+||+|+|+++||||||++++++ ..+|++.++|||++||+.+++
T Consensus 334 ~~~~~~~~~~~~~~~~~vAGKTGTt~~~~DaWfvGytp~~~~~vWvG~d~~~~~~-~~~G~~~a~~~~~~i~~~~~~~~~ 412 (494)
T 2bg1_A 334 TFKSNLTSLNPTLANADWIGKTGTTNQDENMWLMLSTPRLTLGGWIGHDDNHSLS-QQAGYSNNSNYMAHLVNAIQQASP 412 (494)
T ss_dssp CHHHHHHHHCHHHHTSCCEEEEECCTTCSEEEEEEECSSEEEEEEEECTTCCCCC-TTTTTTHHHHHHHHHHHHHHHHST
T ss_pred CHHCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 0003654445555898626866589997237999747993699999689998676-664754138999999999987470
Q ss_pred -CCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf -8983006797771699840322775889997608995317899986567777
Q gi|254780752|r 737 -NIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGPAETYTVID 788 (817)
Q Consensus 737 -~~p~~~f~~P~~iv~~~i~~~sG~la~~~~~~~~~e~f~~gt~P~~~~~~~~ 788 (817)
+.+.++|+.|++|++++||..||++|++.|++. .|+|.+|++|++.|....
T Consensus 413 ~~~~~~~f~~P~~vv~~~v~~~tG~l~~~~~~~~-~~~~~~g~~~~~~~~~~~ 464 (494)
T 2bg1_A 413 SIWGNERFALDPSVVKSEVLKSTGQKPGKVSVEG-KEVEVTGSTVTSYWANKS 464 (494)
T ss_dssp TSSCSCCCCCCTTCEEEEEETTTSSBCEEEECSS-SEEEECCCEEEEEESSSS
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-EEEECCCCCEEEHHCCCC
T ss_conf 3477678899998489998733277898889887-587268994305110489
No 5
>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*
Probab=100.00 E-value=0 Score=608.66 Aligned_cols=355 Identities=22% Similarity=0.325 Sum_probs=306.3
Q ss_pred CCHHHHHHHHHHHHHCCCHH---HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHH
Q ss_conf 57156799885311001243---312573289852488898999999998767654443210000001211248877863
Q gi|254780752|r 269 GSEYFAEEVRRQLIDRYGEK---ALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLAS 345 (817)
Q Consensus 269 ~a~yf~e~V~~~l~~~~ge~---~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~ 345 (817)
..|||+|+|++|+++++.++ +++++|++||||||.++|+++|+++++......
T Consensus 4 ~yp~y~d~v~~e~i~~~~~~~~~~l~~~G~~I~tTiD~~~Q~~~e~~l~~~~~~~~------------------------ 59 (390)
T 2v2f_F 4 NYPAYMDNYLKEVINQVEQETGYNLLTTGMDVYTNVDQEAQKHLWDIYNSDQYVSY------------------------ 59 (390)
T ss_dssp -CCGGGHHHHHHHHHHHHHHHSCCTTTSCEEEEECCCHHHHHHHHHHHHSSSSCCC------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCC------------------------
T ss_conf 56299999999999988776412644699889947889999999999975344216------------------------
Q ss_pred HHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33201335554104765214402676520334431000024442348889665200112233321000013646310123
Q gi|254780752|r 346 IPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVE 425 (817)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~ 425 (817)
T Consensus 60 -------------------------------------------------------------------------------- 59 (390)
T 2v2f_F 60 -------------------------------------------------------------------------------- 59 (390)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCC---CCCCCCCCCCCCCCCCHHHH-HHHHHHCCC-CC-CCC
Q ss_conf 5665157752255531166406566661178721323444---33200123356653100001-278874024-66-544
Q gi|254780752|r 426 HINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQS---EFNRSTQAMRQPGSCFKPIV-YAAALDSGY-TP-ASV 499 (817)
Q Consensus 426 ~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~---~~NrA~~~~rqpGSt~KP~v-y~~Ale~G~-tp-~t~ 499 (817)
....+|+|+|+|||+||+||||+|+++|..+ .+|||+++.||||||||||+ |++|||+|+ .+ .++
T Consensus 60 ---------~~~~~~~a~vv~d~~TG~IlA~vg~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~~aaale~g~~~~~~~~ 130 (390)
T 2v2f_F 60 ---------PDDDLQVASTVVDVSNGKVIAQLGARHQASNVSFGTNQAVETNRDWGSAMKPITDYAPAIEYGVYDSTATM 130 (390)
T ss_dssp ---------SSSCCEEEEEEEETTTTEEEEEECCCC-----CCCCCTTTCCCSCCGGGGHHHHTHHHHHHTTSCSBTTCE
T ss_pred ---------CCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf ---------78770489999988999499999678777676556432220566887417799999999976986664057
Q ss_pred CCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCC-------CCCCCC
Q ss_conf 5652378803785266641276544225666666530440225887625972352110135565556-------766563
Q gi|254780752|r 500 IMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKM-------LPVLPM 572 (817)
Q Consensus 500 ~~D~p~~~~~~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~-------~~~~s~ 572 (817)
+.|.|+.+.. ..|.++||++.++|.+++++||++|||++|+++++++|.+++.+++++|||..+. ....++
T Consensus 131 ~~~~~~~~~~--~~~~~~n~~~~~~G~vtl~~Al~~S~N~~~~~l~~~~G~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 208 (390)
T 2v2f_F 131 VNDIPYNYPG--TSTPVYNWDRAYFGNITLQYALQQSRNVTAVETLNKVGLDRAKTFLNGLGIDYPSMHYANAISSNTTE 208 (390)
T ss_dssp EEESCEECTT--SSCEECCTTSCCCEEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHTTTCCCSSCCGGGGSCSCSSC
T ss_pred ECCCCCCCCC--CCCCCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
T ss_conf 5267610157--99874307998577422999998633037889987539278999999829998764444222321110
Q ss_pred CCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHH
Q ss_conf 44510000377674322015744035446667641024430133585323556666666554554675543535899999
Q gi|254780752|r 573 SLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAY 652 (817)
Q Consensus 573 alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~ 652 (817)
++|..++||+|||++|++|||+|++++||+|++|+|.+|+++.. . +...||+|+++|+
T Consensus 209 ~~g~~~vtplqma~ayaaiaN~G~~~~P~~v~~i~d~~g~~~~~-~---------------------~~~~~v~~~~~a~ 266 (390)
T 2v2f_F 209 SNKQYGASSEKMAAAYAAFANGGIYHKPMYINKVVFSDGSKKEF-S---------------------DVGTRAMKETTAY 266 (390)
T ss_dssp CCTTSSCCHHHHHHHHHHHHTTSEECCCBCEEEEEETTSCEEEC-C---------------------CCCEECSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEEEECCCCCEEC-C---------------------CCCCCCCCHHHHH
T ss_conf 58640458999999999986498670678877798548860022-5---------------------6443455389999
Q ss_pred HHHHHHHHHHHCCCEEHHCCCCCCEEEEECCCCCC---------------CCEEEEEECCCEEEEEEEECCCCCCCCCCC
Q ss_conf 99999999873480432105996046760467897---------------022798456987999998266898278986
Q gi|254780752|r 653 QITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSY---------------RDTWFIGYTPTLVVGVYVGYDIPAPLNNHA 717 (817)
Q Consensus 653 ~~~~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~~~---------------~D~WfvG~tp~~~~~vWvG~D~~~~~~~~~ 717 (817)
++++||+.||+.|||+++...++++||||||+|++ +|+||+||+|+|+++||||+|++... ..+
T Consensus 267 ~~~~~l~~vv~~GT~~~a~~~~~~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~wfvG~~P~~~~~VwvG~~~~~~~-~~~ 345 (390)
T 2v2f_F 267 MMTEMMKTVLAYGTGRGAYLPWLAQAGKTGTSNYTDDEIEKHIKNTGYVAPDEMFVGYTRKYSMAVWTGYSNRLTP-IVG 345 (390)
T ss_dssp HHHHHHHHHHHTSTTGGGCCTTSCCEEEEEECCCCC-----------CCBSEEEEEEECSSEEEEEEEECSSTTSC-BCG
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCCC-CCC
T ss_conf 9999876460267631102799707898147667777653334556777664699997899799999941799888-688
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEE-EECHHHCCC
Q ss_conf 44212179999999999748983006797771699-840322775
Q gi|254780752|r 718 TGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLI-PINKWTGML 761 (817)
Q Consensus 718 ~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~-~i~~~sG~l 761 (817)
+|++.|+|||++||+.++++.+.++|+.|+||++. .+|..+|++
T Consensus 346 ~G~~~aapi~~~i~~~~~~~~~~~~f~~P~gv~~~~~~~~~~g~~ 390 (390)
T 2v2f_F 346 DGFLVAAKVYRSMITYLSEGSNPEDWNIPEGLYRNGEFVFKNGAR 390 (390)
T ss_dssp GGGGHHHHHHHHHHHHHHTTC-CCCCCCCTTEEEETTEEEEC---
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 732799999999999996369977799999815803799716879
No 6
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=100.00 E-value=0 Score=548.01 Aligned_cols=521 Identities=16% Similarity=0.155 Sum_probs=348.2
Q ss_pred EEEECCCCCEEEEEEC---------CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7999078949666612---------5604641799697888545433214611338737999999999986320478867
Q gi|254780752|r 53 TRIHAGNGALMAEYAR---------ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRP 123 (817)
Q Consensus 53 t~iyd~dG~~i~~~~~---------~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~ 123 (817)
-.||||||++|++--. +.+....+.+++..+. .+++++|++|++|.+.|+....+..+.......
T Consensus 61 G~IyDrnG~~LA~n~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 134 (680)
T 2wad_A 61 GEIYDASGKPLVENTLKQVVSFTRSNKMTATDLKEIAKKLL-TYVSISSPNLTERQLADYYLADPEIYKKTVEAL----- 134 (680)
T ss_dssp CCEECTTSCBSEEEEEEEEEEEECCTTCCHHHHHHHHHHHT-TTSCCCCCCCCHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred CEEECCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----
T ss_conf 83991899998861146799998220244235999999998-873577277778877777513888888888764-----
Q ss_pred CCCCHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCC
Q ss_conf 76114799988887-70888329999999999999986607999999972014267433109999998735423440302
Q gi|254780752|r 124 EGASTITQQVAKNF-LLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIE 202 (817)
Q Consensus 124 qGgSTITQQlaKn~-~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~ 202 (817)
+...++.+.. .++.++.+.+++.++.. .+..++++++++.||+..+.+.+.|+... ...+.|+..
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~ 200 (680)
T 2wad_A 135 ----PSEKRLDSDGNRLSESELYNNAVDSVPT---SQLNYTEDEKKEIYLFSQLNAVGNFATGT-------IATDPLNDS 200 (680)
T ss_dssp ----C-------------CHHHHHHHHHHSSC---SCCCCCHHHHHHHHHHHHHHTSCTTCEEE-------CCCSCCCHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCE-------EECCCCCHH
T ss_conf ----5677666555440299998876644235---65434477788899998752012455314-------531679999
Q ss_pred CEEEEEEECCCC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC---HH
Q ss_conf 712544401576-------43321111146678998887666542011125688875301112445432223457---15
Q gi|254780752|r 203 EAAYLAALPKGP-------SNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGS---EY 272 (817)
Q Consensus 203 EaA~LAgi~~~P-------s~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~a---~y 272 (817)
|+|.|++..+.. .....+ |.... .++|..-+.+...++.++.+.+........- ..+.+ .+
T Consensus 201 ~~~~~~~~~~~~pGv~~~~~~~r~y--p~~~~--a~vlGyv~~~~~~~~~~~~~~~~~~~~~~~d-----~vG~~GlE~~ 271 (680)
T 2wad_A 201 QVAVIASISKEMPGISISTSWDRKI--LETSL--SSIVGSVSSEKAGLPAEEAESYLKKGYSLND-----RVGTSYLEKQ 271 (680)
T ss_dssp HHHHHHHHGGGSTTEEEEEEEEEEE--CSSTT--HHHHCCBCCSTTCSCGGGHHHHHHHTCCTTC-----CCBCSHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEEEEECC--CCHHH--HHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC-----CCCCCCCHHH
T ss_conf 9999998644289767885120017--60666--8660851133445436666654413876655-----2565150677
Q ss_pred HHHHHHHH------HHHCCCH------HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHH
Q ss_conf 67998853------1100124------33125732898524888989999999987676544432100000012112488
Q gi|254780752|r 273 FAEEVRRQ------LIDRYGE------KALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWG 340 (817)
Q Consensus 273 f~e~V~~~------l~~~~ge------~~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~ 340 (817)
|-++++-. ..+..|. ..--..|..|++|||.++|+.+++++++.+.....+.+-
T Consensus 272 yd~~L~G~~g~~~~~~d~~g~~~~~~~~~~~~~G~~i~lTiD~~lQ~~~~~~l~~~~~~~~~~~~~-------------- 337 (680)
T 2wad_A 272 YEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVDALLKSYFNSELGNGGA-------------- 337 (680)
T ss_dssp THHHHSCBCCEEEEEECTTSCEEEEEEEECCBCCCEEEESCCHHHHHHHHHHHHHHHHHHHHHSTT--------------
T ss_pred HHHCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC--------------
T ss_conf 764038776875389743010012223467888875132206869999999999999866520356--------------
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77863332013355541047652144026765203344310000244423488896652001122333210000136463
Q gi|254780752|r 341 NTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD 420 (817)
Q Consensus 341 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd 420 (817)
T Consensus 338 -------------------------------------------------------------------------------- 337 (680)
T 2wad_A 338 -------------------------------------------------------------------------------- 337 (680)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECC-CCCCC----CCCCCCCCCCCCCCCCHHHHHHHHHHCC-C
Q ss_conf 1012356651577522555311664065666611787213-23444----3320012335665310000127887402-4
Q gi|254780752|r 421 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGF-SYSQS----EFNRSTQAMRQPGSCFKPIVYAAALDSG-Y 494 (817)
Q Consensus 421 ~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~-d~~~~----~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~ 494 (817)
....++++|+|||+||+|+||+|.+ |.+.+ .+|||+|+.||||||||||++++|||+| +
T Consensus 338 ---------------~~~~~~~~vv~dp~tG~IlAm~~~~~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~~aALe~g~~ 402 (680)
T 2wad_A 338 ---------------KYSEGVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVKAATISSGWENGVL 402 (680)
T ss_dssp ---------------TTCCEEEEEEECTTTCBEEEEEEEEECTTTCCEEECTTHHHHCCBCCGGGGHHHHHHHHHHTTSC
T ss_pred ---------------CCCCCEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf ---------------67786699999666580441367631221001345442011113578752167889999970899
Q ss_pred CCCCCCCCCEEEEECCCCEEEEEEC--CCCCCCHHHHHHHHHHHCCHHHHHHHHHC------------------CCCEEE
Q ss_conf 6654456523788037852666412--76544225666666530440225887625------------------972352
Q gi|254780752|r 495 TPASVIMDAPIEVVSRGKIWKPENY--SKNFSGASTLRFGLEKSRNLMTVRLAHNM------------------GMTVVA 554 (817)
Q Consensus 495 tp~t~~~D~p~~~~~~~~~~~p~N~--~~~~~G~itl~~Al~~S~N~~~v~l~~~~------------------G~~~~~ 554 (817)
+|++++.|.|..+.+... ++|| .+.++|.|++++||++|||+++++++.++ |++++.
T Consensus 403 ~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~g~itl~~Al~~S~N~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~kl~ 479 (680)
T 2wad_A 403 SGNQTLTDQPIVFQGSAP---IYSWYKLAYGSFPITAVEALEYSSNAYVVQTALGIMGQTYQPNMFVGTSNLESAMGKLR 479 (680)
T ss_dssp CSSCCEEECCBCBTTSCC---BCCTTTTTTCSEEECHHHHHHHTCHHHHHHHHHHHTTCCCCTTBCCCCTTHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCCC---CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHHH
T ss_conf 987357137842236886---42101367788772056364507559999999875024454033304267876546889
Q ss_pred EEECCCCCCCCCCCC------------------CCCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCC---
Q ss_conf 110135565556766------------------56344510-00037767432201574403544666764102443---
Q gi|254780752|r 555 DYAENFGIYDKMLPV------------------LPMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGK--- 612 (817)
Q Consensus 555 ~~~~~~Gi~~~~~~~------------------~s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~--- 612 (817)
+++++|||......+ .++++|++ .+||||||+||++|||+|++++||+|++|+|.+|+
T Consensus 480 ~~~~~~G~~~~~~i~lp~E~~G~~~~~~~~~~~~~~~~Gqg~~vTPlqma~aya~iaN~G~~~~P~~v~~I~d~~~~~~~ 559 (680)
T 2wad_A 480 STFGEYGLGSATGIDLPDESTGLVPKEYNFANFITNAFGQFDNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGL 559 (680)
T ss_dssp HHHHHTTSSSCCCCSSSCCCCCBCCSSCCHHHHHHHTTTSSSBBCHHHHHHHHHHHHTTTEEECCBSEEEEEEECTTSSE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCC
T ss_conf 99997099865688665445676775233332232235776778999999999999759759720899987447775556
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH----CCCEEHH-CCCCCCEEEEECCCC
Q ss_conf --013358532355666666655455467554353589999999999999873----4804321-059960467604678
Q gi|254780752|r 613 --TIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK----HGTATGK-VRLNRPVAGKTGTTS 685 (817)
Q Consensus 613 --vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~----~GTg~~a-~~~~~~iaGKTGTt~ 685 (817)
++.+.+++. ..+.+++++++.++++||+.||+ .|||++. ...++++||||||++
T Consensus 560 ~~~~~~~~~~~-------------------~~~~~~s~~~~~~l~~~m~~Vv~gt~~~gt~~~~~~~~~~~vaGKTGTAq 620 (680)
T 2wad_A 560 GELIQAIDTKE-------------------INKVNISESDMAILHQGFYQVSHGTSPLTTGRAFSDGATVSISGKTGTGE 620 (680)
T ss_dssp EEEEEECCCCE-------------------EEECSSCHHHHHHHHHHHHHHHHCCSTTCCCGGGTTTCSSCCEEEECC--
T ss_pred CCCCCCCCCCC-------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCC
T ss_conf 73012368752-------------------46567999999999999999872878663456321579988999843435
Q ss_pred -------CCCCEEEEEECC----CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf -------970227984569----8799999826689827898644212179999999999748983
Q gi|254780752|r 686 -------SYRDTWFIGYTP----TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPS 740 (817)
Q Consensus 686 -------~~~D~WfvG~tp----~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~ 740 (817)
+..|+||+||+| +|+++||+ +. .+..|++.|+|||+++|+..++..|.
T Consensus 621 ~~~~~~~~~~~awFvGy~P~~~P~~~v~V~v--~~-----~~~~g~~~A~~i~~~i~~~y~~~~~~ 679 (680)
T 2wad_A 621 SYVAGGQEATNTNAVAYAPTENPQIAVAVVF--PH-----NTNLTKNVGPAIARDIINLYNQHHPM 679 (680)
T ss_dssp ----------CCCEEEEESTTSCCEEEEEEC--TT-----CCCCSCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCEEEEEEEECCCCEEEEEEEE--EC-----CCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 2579998667089999997689869999999--68-----99538889999999999999855879
No 7
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=100.00 E-value=0 Score=531.39 Aligned_cols=440 Identities=19% Similarity=0.187 Sum_probs=318.7
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 832999999999-9999986607999999972014267433109999998735423440302712544401576433211
Q gi|254780752|r 142 NQTMDRKIKEIL-LSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPF 220 (817)
Q Consensus 142 e~t~~RK~~E~~-lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~ 220 (817)
+++..+|+.|.+ ..+.+++.+.|++|++.|+|.++|+...+|+..|+..||.|.++.|+++.. .+.+.|.++-|.
T Consensus 67 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~l~Gi----~~~~~~~R~YP~ 142 (702)
T 1qme_A 67 EKTQFNKVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGI----DFTTSPNRSYPN 142 (702)
T ss_dssp -------------------------------------------------------------------------CEEECTT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCE----EEEECEEEECCC
T ss_conf 4667999999988760999999999975533033101002257789999999998876789957----743060367888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC-----CCCC-CCCCCCCHHHHHHHHHHHHHCCCHHHHCCCC
Q ss_conf 111466789988876665420111256888753011124-----4543-2223457156799885311001243312573
Q gi|254780752|r 221 RKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKIT-----IKQR-RSHLFGSEYFAEEVRRQLIDRYGEKALYEDG 294 (817)
Q Consensus 221 ~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~-----~~~~-~~~~~~a~yf~e~V~~~l~~~~ge~~l~~~G 294 (817)
.+.-. .|| ||+...+........+... +... ....+...+..+..-+.+...........+|
T Consensus 143 ~~~as------~vi------G~v~~~~~~~~~~~~iG~~GlE~~~d~~L~G~~g~~~~~~~~~g~~~~~~~~~~~~~~~G 210 (702)
T 1qme_A 143 GQFAS------SFI------GLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDRLGNIVPGTEQVSQRTMDG 210 (702)
T ss_dssp SSSSH------HHH------CCEEEEECTTSCEEEEECSHHHHHTHHHHHCBCC---------------------CCBCC
T ss_pred CCCHH------CEE------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 51032------031------434333333320021227888888787538988864211013685211333233467899
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf 28985248889899999999876765444321000000121124887786333201335554104765214402676520
Q gi|254780752|r 295 LSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRP 374 (817)
Q Consensus 295 l~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 374 (817)
+.|+||||.++|..+|+++.+.+..++
T Consensus 211 ~~I~lTID~~lQ~~~e~~l~~~~~~~~----------------------------------------------------- 237 (702)
T 1qme_A 211 KDVYTTISSPLQSFMETQMDAFQEKVK----------------------------------------------------- 237 (702)
T ss_dssp CEEEESCCHHHHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_conf 735997789999999999999998616-----------------------------------------------------
Q ss_pred CCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCE
Q ss_conf 33443100002444234888966520011223332100001364631012356651577522555311664065666611
Q gi|254780752|r 375 TIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRIL 454 (817)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~i~~~~~~~~l~~~p~~q~a~V~id~~TG~Il 454 (817)
.-.+++|+|||+||+||
T Consensus 238 ---------------------------------------------------------------~~~g~~Vvmd~~TG~Il 254 (702)
T 1qme_A 238 ---------------------------------------------------------------GKYMTATLVSAKTGEIL 254 (702)
T ss_dssp ---------------------------------------------------------------CSEEEEEEEETTTCBEE
T ss_pred ---------------------------------------------------------------CCCEEEEEEECCCCEEE
T ss_conf ---------------------------------------------------------------75237999977899089
Q ss_pred EEEECCCCCCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEEEEEECCCCC
Q ss_conf 787213234443----------320012335665310000127887402-466544565237880378526664127654
Q gi|254780752|r 455 ATIGGFSYSQSE----------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIWKPENYSKNF 523 (817)
Q Consensus 455 A~vGg~d~~~~~----------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~N~~~~~ 523 (817)
||++.++|+.+. .|+++++.+|||||||||+|++|||+| +++++++.+.++.+.+....+.+.|+++.+
T Consensus 255 Amas~p~~d~n~~~~~~~~~~~~~~~~~~~~~PGStfK~~t~aaALe~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (702)
T 1qme_A 255 ATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTG 334 (702)
T ss_dssp EEEEESCCCTTTCTTCCTTCCCCCTTTSCCBCCGGGGHHHHHHHHHHTTCCCTTCEEECSCEEETTEEECCHHHHTTSCS
T ss_pred EEECCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCC
T ss_conf 98325777755443456322202531011257752022998999997697323302301340436852102446766778
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-----------------CCCCCCC-CEEHHHHHH
Q ss_conf 4225666666530440225887625972352110135565556766-----------------5634451-000037767
Q gi|254780752|r 524 SGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPV-----------------LPMSLGA-GETTVLRMV 585 (817)
Q Consensus 524 ~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~-----------------~s~alG~-~~vtpl~la 585 (817)
+|.+++++||++|||++++++++++|.+.+.+++++|||....... .++++|+ ..+||||||
T Consensus 335 ~G~itl~~al~~S~N~~~~~l~~~lG~~~~~~~~~~fG~g~~t~i~~~~e~~g~~p~~~~~~~a~~~~Gq~~~vTPlqma 414 (702)
T 1qme_A 335 GRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMI 414 (702)
T ss_dssp CCEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSSSSCCCCBCCCSSHHHHHHGGGTCSCBBCHHHHH
T ss_pred CCEEEHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHH
T ss_conf 72001344125233712566654258436788988607886668887534577687655333331430798667999999
Q ss_pred HHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH--
Q ss_conf 432201574403544666764102443013358532355666666655455467554353589999999999999873--
Q gi|254780752|r 586 SAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK-- 663 (817)
Q Consensus 586 ~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~-- 663 (817)
+||++|||+|++++||+|++|+|.+|+++++.++.. ..+++|++++..|+++|+.|++
T Consensus 415 ~ayaaiANgG~~~~P~lV~~I~d~~g~~i~~~~~~~--------------------~~~~is~~~a~~~~~~m~~vv~~~ 474 (702)
T 1qme_A 415 RAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEI--------------------VGNPVSKDAASLTRTNMVLVGTDP 474 (702)
T ss_dssp HHHHHHHTTTCEECCBCEEEEEETTTTEEEECCCCE--------------------EECCSCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCEEEEEEEEEEEECCCCCEEEECCCCC--------------------CCCCCCHHHHHHHHHHHHHHEECC
T ss_conf 999999719859610899999869997874048733--------------------576689999999999999862224
Q ss_pred -------CCCEE-HHCCCCCCEEEEECCCCCC-------------CCEEEEEEC----CCEEEEEEEECCCCCCCCCCCC
Q ss_conf -------48043-2105996046760467897-------------022798456----9879999982668982789864
Q gi|254780752|r 664 -------HGTAT-GKVRLNRPVAGKTGTTSSY-------------RDTWFIGYT----PTLVVGVYVGYDIPAPLNNHAT 718 (817)
Q Consensus 664 -------~GTg~-~a~~~~~~iaGKTGTt~~~-------------~D~WfvG~t----p~~~~~vWvG~D~~~~~~~~~~ 718 (817)
.|||+ .+...|++|||||||++.. ..+||+||. |+|+++||+ |+|+. ..+.+
T Consensus 475 ~~gt~~~~gtg~~~a~~~g~~vaGKTGTAq~~~~~~~~~~~~~~~~~~sfvg~~P~~~P~~~~~V~v--~~p~~-~~g~~ 551 (702)
T 1qme_A 475 VYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTV--QQPEH-YSGIQ 551 (702)
T ss_dssp TTCTTEETTTTEESSCBTTBCCEEEEEEEECBCGGGSSBCCSTTCEEEEEEEEESSSSCSEEEEEEE--ESCSS-CCHHH
T ss_pred CCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCEEEEEEE--ECCCC-CCCCC
T ss_conf 5540312677754436899789999950302477788410156550699999978799819999999--78886-67872
Q ss_pred CCCCCHHHHHHHH--HHHHC
Q ss_conf 4212179999999--99974
Q gi|254780752|r 719 GSTLTAPIFNAFM--KEALK 736 (817)
Q Consensus 719 G~~~a~piw~~~m--~~~~~ 736 (817)
|+.+|+|||+++| ..++.
T Consensus 552 gg~va~pi~~~i~~~~~~l~ 571 (702)
T 1qme_A 552 LGEFANPILERASAMKDSLN 571 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 15899999999987652203
No 8
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=514.94 Aligned_cols=389 Identities=23% Similarity=0.307 Sum_probs=289.6
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC--CHHH------------H
Q ss_conf 4015764332111114667899888766654201112568887530111244543222345--7156------------7
Q gi|254780752|r 209 ALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFG--SEYF------------A 274 (817)
Q Consensus 209 gi~~~Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~~i~~~~~~~~~~~~~--a~yf------------~ 274 (817)
-||..|.+|.+.........||..+.....+.|.|+..--..|...+..-..+..+.+... +.++ .
T Consensus 13 ~~~~~~~y~~~~~~~~~~~n~r~~~~~~~~~rG~I~~~g~~la~s~~~~~~~~~~R~Yp~g~~~a~v~Gy~~~~~G~~Gl 92 (483)
T 3lo7_A 13 DIPTENLYFQGAMGRADPRNQRVLLDEYSRQRGQITAGGQLLAYSVATDGRFRFLRVYPNPEVYAPVTGFYSLRYSSTAL 92 (483)
T ss_dssp ------------------------CCGGGSCCCCEEETTEEEEEEEECSSSSCEEEECSSHHHHHHHHCCEETTTEECHH
T ss_pred CCCCCCEEEECHHHCCCCCCCHHHHHHHCCCCCCEEECCEEEEEEEEECCCCEEEEECCCCCCHHCEEEEECCCCCHHHH
T ss_conf 78987646871432379987468999734768988859979998787089846998893975230223155787656767
Q ss_pred HHHHHHHHH-----CCCH---H---HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHH
Q ss_conf 998853110-----0124---3---3125732898524888989999999987676544432100000012112488778
Q gi|254780752|r 275 EEVRRQLID-----RYGE---K---ALYEDGLSIRTSLDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTL 343 (817)
Q Consensus 275 e~V~~~l~~-----~~ge---~---~l~~~Gl~I~TTiD~~lQ~~Ae~ai~~~l~~~d~~~g~rg~~~~~~~~~~~~~~~ 343 (817)
|...+..+. .++. + .--..|++|+||||+++|++|+++|++.+..
T Consensus 93 E~~~~~~L~G~~~~~~~~~~~~~~~~~~~~G~~I~tTID~~lQ~~a~~al~~~~~~------------------------ 148 (483)
T 3lo7_A 93 ERAEDPILNGSDRRLFGRRLADFFTGRDPRGGNVDTTINPRIQQAGWDAMQQGCYG------------------------ 148 (483)
T ss_dssp HHHTHHHHHTCCTTC--------------CCCEEEECCCHHHHHHHHHHHHHBTTB------------------------
T ss_pred HHHHHHHCCCCCCCEECEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCC------------------------
T ss_conf 89878861797364202485533435899999589746999999999999863536------------------------
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63332013355541047652144026765203344310000244423488896652001122333210000136463101
Q gi|254780752|r 344 ASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIY 423 (817)
Q Consensus 344 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~ 423 (817)
T Consensus 149 -------------------------------------------------------------------------------- 148 (483)
T 3lo7_A 149 -------------------------------------------------------------------------------- 148 (483)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCC------------------------CCCCCCCCCCCCC
Q ss_conf 2356651577522555311664065666611787213234443------------------------3200123356653
Q gi|254780752|r 424 VEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSE------------------------FNRSTQAMRQPGS 479 (817)
Q Consensus 424 i~~~~~~~~l~~~p~~q~a~V~id~~TG~IlA~vGg~d~~~~~------------------------~NrA~~~~rqpGS 479 (817)
..+||+|+|||+||+|||||++++|+.+. +|||+++.+||||
T Consensus 149 --------------~~~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~~pl~Nra~~~~y~PGS 214 (483)
T 3lo7_A 149 --------------PCKGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPASPLTNRAISETYPPGS 214 (483)
T ss_dssp --------------CCCEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTTCTTSCTTTSCCBCCGG
T ss_pred --------------CCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf --------------662799999789992999960688882101367741127999873146433101404412537988
Q ss_pred CCHHHHHHHHHHCCCC-CCCCCCCCEEEEECC-CCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 1000012788740246-654456523788037-85266641276544225666666530440225887625972352110
Q gi|254780752|r 480 CFKPIVYAAALDSGYT-PASVIMDAPIEVVSR-GKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYA 557 (817)
Q Consensus 480 t~KP~vy~~Ale~G~t-p~t~~~D~p~~~~~~-~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~ 557 (817)
|||||+|++|||+|+. +.+++.+.++.+.+. ...|.+.|++..++|.+++++||++|||+++++++.++|.+++.+++
T Consensus 215 tfK~~t~aaaLe~G~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~l~~Al~~S~N~~f~~l~~~~G~~~~~~~~ 294 (483)
T 3lo7_A 215 TFKVITTAAALAAGATETEQLTAAPTIPLPGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTAFVQLGIRTGADALRSMA 294 (483)
T ss_dssp GGHHHHHHHHHHTTCCTTCEEECCSBCCC-------BCC---CCSSSSEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHH
T ss_conf 48999999999809852000103686113686421110025446898734399999860425888999983940343357
Q ss_pred CCCCCCCCCCCC--------------------CCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 135565556766--------------------563445100003776743220157440354466676410244301335
Q gi|254780752|r 558 ENFGIYDKMLPV--------------------LPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQ 617 (817)
Q Consensus 558 ~~~Gi~~~~~~~--------------------~s~alG~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~ 617 (817)
++|||..+.... .++++|...+||||||.+|++|||+|++++||+|++|+|.+|+++++.
T Consensus 295 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiANgG~~~~P~lV~~i~~~dg~~i~~~ 374 (483)
T 3lo7_A 295 RAFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRPYLVGSLKGPDLANISTT 374 (483)
T ss_dssp HHTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHHTTTEEECCBSEEEEECTTCCEEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEECC
T ss_conf 76089985567764444344565333454322011045544677887776665425983326601456766987532013
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEEEECCCCCCCC-------E
Q ss_conf 853235566666665545546755435358999999999999987348043210599604676046789702-------2
Q gi|254780752|r 618 EQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTSSYRD-------T 690 (817)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~~~~D-------~ 690 (817)
.+. ..++++|+++|+.|++||++|+..+++ ++...+++|||||||+++.+| +
T Consensus 375 ~~~--------------------~~~~~is~~~a~~l~~~m~~v~~~~~~-~~~~~g~~vAGKTGTaq~~~d~~~~~~~a 433 (483)
T 3lo7_A 375 VGY--------------------QQRRAVSPQVAAKLTELMVGAEKVAQQ-KGAIPGVQIASKTGTAEHGTDPRHTPPHA 433 (483)
T ss_dssp CCC--------------------EEEECSCHHHHHHHHHHHHHHHHHSCC-TTCCTTCCCEEEEEEECCSSCTTTSCCEE
T ss_pred CCC--------------------CCCCCCCHHHHHHHHHHHHHHHHHCEE-CCCCCCCEEEEEEECCCCCCCCCCCCCCE
T ss_conf 564--------------------332137999999999999754222002-23448977999985322576877778728
Q ss_pred EEEEECC----CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7984569----879999982668982789864421217999999999974898
Q gi|254780752|r 691 WFIGYTP----TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIP 739 (817)
Q Consensus 691 WfvG~tp----~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p 739 (817)
||+||+| +|+++|||....+ ....+|++.|+|||++||+.+|++.|
T Consensus 434 WFvGfaP~~~P~~avaV~ve~g~~---~~~~~G~~~AaPI~~~im~~~L~g~P 483 (483)
T 3lo7_A 434 WYIAFAPAQAPKVAVAVLVENGAD---RLSATGGALAAPIGRAVIEAALQGEP 483 (483)
T ss_dssp EEEEEESTTSCCEEEEEEETTCCC---SSSSSSCTTHHHHHHHHHHHHHC---
T ss_pred EEEEEEECCCCEEEEEEEEECCCC---CCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 999997779993999999977997---88875169999999999999976699
No 9
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus VF5} SCOP: d.2.1.10 PDB: 3d3h_A*
Probab=100.00 E-value=0 Score=520.66 Aligned_cols=198 Identities=47% Similarity=0.781 Sum_probs=193.2
Q ss_pred EEECCCCCEEEEEECCCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99907894966661256046417996978885454332146113387379999999999863204788677611479998
Q gi|254780752|r 54 RIHAGNGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQV 133 (817)
Q Consensus 54 ~iyd~dG~~i~~~~~~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQl 133 (817)
.++|+||++|++++.++|.||++++||++|++|+||+||+|||+|+|||+++|+||++.|+. +|+..+|||||||||
T Consensus 3 ~~~D~~G~~i~~~~~~~r~~v~l~~ip~~l~~A~ia~ED~~F~~H~Gvd~~~i~rA~~~n~~---~~~~~~GgSTITqQl 79 (200)
T 2oqo_A 3 GYQDPKGRLYGTIGIQKRFYVSIDKIPEHVINAFVATEDRNFWHHFGIDPVAIVRAAIVNYR---AGRIVQGGSTITQQL 79 (200)
T ss_dssp -----------CCCGGGSCCCCGGGSCHHHHHHHHHHHCTTTTTSSSSCHHHHHHHHSCC---------CCCCCCHHHHH
T ss_pred CCCCCCCCEEHHHHHCCCEEEEHHHCCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHC---CCCCCCCCCHHHHHH
T ss_conf 75889998805512104248328995999998899997100310898685778999998401---787445632399999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCC
Q ss_conf 88877088832999999999999998660799999997201426743310999999873542344030271254440157
Q gi|254780752|r 134 AKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKG 213 (817)
Q Consensus 134 aKn~~l~~e~t~~RK~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~ 213 (817)
|||+|++++||+.||++|+++|++||++||||||||+|||.||||+|+|||++||++||||+++|||++|||+||||+++
T Consensus 80 ~k~l~~~~~rs~~RKl~E~~~A~~lE~~~sK~~ILe~YLN~v~~G~~~yGv~aAa~~yFgK~~~~Lt~~EaA~La~l~~~ 159 (200)
T 2oqo_A 80 AKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLGSGAYGVEAAAQVYFGKHVWELSLDEAALLAALPKA 159 (200)
T ss_dssp HHTTSSSCCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCBCSTTCBSHHHHHHHHHSSCGGGCCHHHHHHHHHSTTC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99870677676999999999999999985848899999847015785287999999986487556999999999887059
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 64332111114667899888766654201112568887530
Q gi|254780752|r 214 PSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQK 254 (817)
Q Consensus 214 Ps~y~P~~np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~ 254 (817)
|+.|||.+||+++++||++||++|+++|+||++||++|++|
T Consensus 160 P~~y~p~~~~~~~~~R~~~vL~~m~~~G~Is~~e~~~Al~e 200 (200)
T 2oqo_A 160 PAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQYEEAVNK 200 (200)
T ss_dssp HHHHCTTTCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 75379867989999999999999998699999999998674
No 10
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, cell membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp}
Probab=100.00 E-value=0 Score=489.08 Aligned_cols=182 Identities=37% Similarity=0.619 Sum_probs=176.3
Q ss_pred CCEEEECHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 56046417996978885454332146113387379999999999863204788677611479998888770888329999
Q gi|254780752|r 69 ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRK 148 (817)
Q Consensus 69 ~~R~~v~~~~ip~~l~~A~iA~ED~rFy~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK 148 (817)
.+|.||++++||++|++|+||+||+|||+|+|||++||+||++.|+ +|+.+|||||||||||||+|++.+||+.||
T Consensus 19 ~~~~~v~~~~ip~~l~~A~ia~ED~rF~~H~GvD~~~i~rA~~~~l----~g~~~~GgSTITqQl~K~~~~~~~rt~~RK 94 (209)
T 3hzs_A 19 NKSSFVSADNMPEYVKGAFISMQDERFYNHHGFDLKGTTRALFSTI----SDRDVQGGSTITQQVVKNYFYDNDRSFTRK 94 (209)
T ss_dssp GSTTCCCGGGSCHHHHHHHHHHHCTTTTTSSSSCHHHHHHHHHTCS----SSTTCCCSCCHHHHHHHHHBCCCCCCHHHH
T ss_pred CCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----CCCCCCCCCHHHHHHHHCCCCCCCCCHHHH
T ss_conf 0597427898499999777878448634587869999999999984----188877730499999860167865548999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCH-------HHCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 999999999986607999999972014267433109999998735423-------4403027125444015764332111
Q gi|254780752|r 149 IKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSV-------SELTIEEAAYLAALPKGPSNYDPFR 221 (817)
Q Consensus 149 ~~E~~lA~~lE~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~-------~dLtl~EaA~LAgi~~~Ps~y~P~~ 221 (817)
++|+++|++||++||||||||+|||+||||+|+|||++||+.||||++ +|||++|||+||||+++|+.|||.+
T Consensus 95 ~~E~~~A~~lE~~~sK~eILe~YLN~v~~G~~~yGi~aAa~~yFgk~~~~~~~~~~~L~~~EaA~La~l~~~Ps~y~p~~ 174 (209)
T 3hzs_A 95 VKELFVAHRVEKQYNKNEILSFYLNNIYFGDNQYTLEGAANHYFGTTVNKNSTTMSHITVLQSAILASKVNAPSVYNINN 174 (209)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTSSCCBTTBCSHHHHHHHHHSCBCCTTCSSSCBCCHHHHHHHHHHTTSTTTCCSSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999984841799988778350688614999999983999001234577799999999984459976479978
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 114667899888766654201112568887530
Q gi|254780752|r 222 KNKAAIARRNWVIDRMEENGYISQEQALVAKQK 254 (817)
Q Consensus 222 np~~a~~Rr~~VL~~M~~~g~It~~e~~~a~~~ 254 (817)
+|+++.+||++||++|+++|+||++||++|+++
T Consensus 175 ~~~~~~~R~~~vL~~m~~~g~Is~~e~~~A~~e 207 (209)
T 3hzs_A 175 MSENFTQRVSTNLEKMKQQNYINETQYQQAMSQ 207 (209)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 989999999999999998699999999999844
No 11
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=100.00 E-value=0 Score=482.40 Aligned_cols=282 Identities=25% Similarity=0.337 Sum_probs=238.0
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCC---------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEC
Q ss_conf 311664065666611787213234443---------320012335665310000127887402-4665445652378803
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSE---------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVS 509 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~ 509 (817)
.+++|+|||+||+||||++.++|+.+. +|||+++.+|||||||||++++|||+| +++.+.+++.|..+..
T Consensus 231 ~g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle~g~~~~~~~~~~~~~~~~~ 310 (564)
T 3oc2_A 231 AGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQI 310 (564)
T ss_dssp CEEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHHTTSCCTTCEEECTTSEEEE
T ss_pred EEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEEC
T ss_conf 02699972688838872378986643212468467775776186788635778999999977972564267527862535
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC--------------------
Q ss_conf 785266641276544225666666530440225887625972352110135565556766--------------------
Q gi|254780752|r 510 RGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPV-------------------- 569 (817)
Q Consensus 510 ~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~-------------------- 569 (817)
+ +.+.|+....+|.+++++||++|||++|++++.++|.+++.+++++|||..+...+
T Consensus 311 g---~~~~~~~~~~~g~~~l~~al~~S~Nv~f~~l~~~lg~~~~~~~~~~fG~g~~~~id~p~~~~~~~~~~~~~~~~~~ 387 (564)
T 3oc2_A 311 G---RYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAET 387 (564)
T ss_dssp T---TEEEECSCCCCSEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSCTTCCCCBCCCCSSCCHHHH
T ss_pred C---CCEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 8---7102013234552021110121667199999998758999999997799877799974221577776443223320
Q ss_pred CCCCCCCC-EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCH
Q ss_conf 56344510-00037767432201574403544666764102443013358532355666666655455467554353589
Q gi|254780752|r 570 LPMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDP 648 (817)
Q Consensus 570 ~s~alG~~-~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ 648 (817)
.++++|++ .+||||||.+|++|||+|.+++|++++++.+. ...+|+|+
T Consensus 388 ~~~~~Gqg~~vTPlqma~~~a~iAN~G~~~~p~~~~~~~~~-------------------------------~~~~vis~ 436 (564)
T 3oc2_A 388 ATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVP-------------------------------DGVQVISP 436 (564)
T ss_dssp HHHHTTCSCBBCHHHHHHHHHHHHTTTEECCCBSBCCSSCC-------------------------------CCEECSCH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECEEEEEECCC-------------------------------CCCCCCCH
T ss_conf 02213887346799999988762279879603578740366-------------------------------43356898
Q ss_pred HHHHHHHHHHHHHHH-CCCEEHHCCCCCCEEEEECCCC-----------CCCCEEEEEECC----CEEEEEEEECCCCCC
Q ss_conf 999999999999873-4804321059960467604678-----------970227984569----879999982668982
Q gi|254780752|r 649 MTAYQITSMLEGVIK-HGTATGKVRLNRPVAGKTGTTS-----------SYRDTWFIGYTP----TLVVGVYVGYDIPAP 712 (817)
Q Consensus 649 ~~a~~~~~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~-----------~~~D~WfvG~tp----~~~~~vWvG~D~~~~ 712 (817)
++|+.|++||+.||+ .||+.++...|+++||||||++ +..++||+||+| +|+++||+. ++.
T Consensus 437 ~~a~~v~~~l~~Vv~~~gt~~~a~~~g~~iAGKTGTAq~~~~~~~~~~~~~~~awFvGy~P~~~P~~av~V~v~--~~~- 513 (564)
T 3oc2_A 437 EVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIAMVVVID--EPS- 513 (564)
T ss_dssp HHHHHHHHHHHHHHHSTTSCGGGCCTTSCCEEEEEEEEC-----------CEEEEEEEEECTTSCCEEEEEEEE--EC--
T ss_pred HHHHHHHHHHHHEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE--CCC-
T ss_conf 99999999997469789988864279967999862361155888762268866999999877998599999990--289-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHC
Q ss_conf 78986442121799999999997489830067977716998403227
Q gi|254780752|r 713 LNNHATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTG 759 (817)
Q Consensus 713 ~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~~P~~iv~~~i~~~sG 759 (817)
+.+.+||+.|+|||++||+.+++.++..+|..|++++...||..++
T Consensus 514 -~~g~~Gg~~AaPi~~~im~~~l~~~~v~p~~~p~~~~~~~~~~~~~ 559 (564)
T 3oc2_A 514 -KAGYFGGLVSAPVFSKVMAGALRLMNVPPDNLPTATEQQQVNAAPA 559 (564)
T ss_dssp -----CHHHHTHHHHHHHHHHHHHHTTCCCCCC--------------
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
T ss_conf -8887655999999999999999766989876898763024137999
No 12
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell division, cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=100.00 E-value=0 Score=463.39 Aligned_cols=264 Identities=27% Similarity=0.416 Sum_probs=222.3
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCC---------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEC
Q ss_conf 311664065666611787213234443---------320012335665310000127887402-4665445652378803
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSE---------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVS 509 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~---------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~ 509 (817)
.+++|+|||+||+|+||++.++|+.+. +|||+++.+|||||||||++++||+.| .++.+.+.+.+..+
T Consensus 223 ~g~~vv~d~~tG~IlAm~s~p~~d~~~~~~~~~~~~~Nra~~~~y~PGStfK~~t~~aal~~g~~~~~~~~~~~~~~~-- 300 (542)
T 3equ_A 223 AGTVVVLDARTGEILALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNTQPYKI-- 300 (542)
T ss_dssp EEEEEEEETTTCBEEEEEEESCCCTTSGGGCCHHHHCCHHHHCCBCCGGGGHHHHHHHHHHHTSSCTTCEEECCCEEE--
T ss_pred CCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEECCEECCCCCCCC--
T ss_conf 634898506778367642677666221235663112434440767784266689999998569630330114577534--
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-------------------
Q ss_conf 7852666412765442256666665304402258876259723521101355655567665-------------------
Q gi|254780752|r 510 RGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVL------------------- 570 (817)
Q Consensus 510 ~~~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~------------------- 570 (817)
|.++|++..++|.+++++||++|||++|+++++++|.+++.+++++|||..+...++
T Consensus 301 ----~~~~~~~~~~~G~~~l~~al~~S~N~~~~~l~~~~g~~~~~~~~~~fG~g~~t~idlp~e~~~~~~~~~~~~~~~~ 376 (542)
T 3equ_A 301 ----GPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRMHSGFPGETAGLLRNWRRWRPIEQ 376 (542)
T ss_dssp ----TTEEECCSSCCSEEEHHHHHHHTCHHHHHHHHTTSCHHHHHHHHHHTTTTSCCCCSCTTCCCCBCCCGGGCCHHHH
T ss_pred ----CCCCCCCCCCCCCCCHHHHHHCCCEEHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf ----4321123367784248998541745154578887295889999997499865689987543454344334673112
Q ss_pred -CCCCCC-CEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCH
Q ss_conf -634451-000037767432201574403544666764102443013358532355666666655455467554353589
Q gi|254780752|r 571 -PMSLGA-GETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDP 648 (817)
Q Consensus 571 -s~alG~-~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ 648 (817)
.+++|+ ..+||||||++|++|||+|.+++||++++|.+.+| ++++++
T Consensus 377 ~~~~~Gqg~~~Tplq~a~~~a~iaN~G~~~~p~~v~~i~~~~~-------------------------------~~~~~~ 425 (542)
T 3equ_A 377 ATMSFGYGLQLSLLQLARAYTALTHDGVLLPLSFEKQAVAPQG-------------------------------KRIFKE 425 (542)
T ss_dssp HHHHTTCSCBBCHHHHHHHHHHHHTTTEECCCBSBCCSSCCCC-------------------------------EECSCH
T ss_pred HHHCCCCCCCCCHHHHHHHHHEEEECCEEEEEEEEEECCCCCC-------------------------------CCCCCH
T ss_conf 2320477656888998555232520878998765442027877-------------------------------532447
Q ss_pred HHHHHHHHHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCC---------CCEEEEEECC----CEEEEEEEECCCCCCCC
Q ss_conf 999999999999873-480432105996046760467897---------0227984569----87999998266898278
Q gi|254780752|r 649 MTAYQITSMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSY---------RDTWFIGYTP----TLVVGVYVGYDIPAPLN 714 (817)
Q Consensus 649 ~~a~~~~~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~---------~D~WfvG~tp----~~~~~vWvG~D~~~~~~ 714 (817)
++++.|++||++||+ +|||+++...+++|||||||++.. .++||+||+| +|+++||| |+++ +
T Consensus 426 ~~a~~i~~~l~~Vv~~~GTg~~a~~~g~~vaGKTGTAq~~~~g~~~~~~~~awFvGy~P~~~p~~av~V~v--~~~~--~ 501 (542)
T 3equ_A 426 STAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGRYADNKHVATFIGFAPAKNPRVIVAVTI--DEPT--A 501 (542)
T ss_dssp HHHHHHHHHHHHHHSTTSSCGGGCCTTSCCEEEEEEC-----------CCEEEEEEEESSSSCCEEEEEEE--ESCC--S
T ss_pred HHHHHHHHHHHHEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEE--ECCC--C
T ss_conf 78999998998637279818720579954899920001567885578984699999988799859999999--4289--8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--C-CCCCCC
Q ss_conf 98644212179999999999748--9-830067
Q gi|254780752|r 715 NHATGSTLTAPIFNAFMKEALKN--I-PSSRFV 744 (817)
Q Consensus 715 ~~~~G~~~a~piw~~~m~~~~~~--~-p~~~f~ 744 (817)
.+.+||..|+|||++||+.+++. . |.++++
T Consensus 502 ~g~~G~~~AaPi~~~i~~~~l~~~~~~p~~~~~ 534 (542)
T 3equ_A 502 HGYYGGVVAGPPFKKIMGGSLNILGISPTKPLT 534 (542)
T ss_dssp SCCCHHHHTHHHHHHHHHHHHHHTTCCCSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 987567899999999999999976989789988
No 13
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=100.00 E-value=0 Score=420.25 Aligned_cols=268 Identities=17% Similarity=0.269 Sum_probs=212.7
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCC--------------------CCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCC
Q ss_conf 311664065666611787213234443--------------------320012335665310000127887402-46654
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSE--------------------FNRSTQAMRQPGSCFKPIVYAAALDSG-YTPAS 498 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~--------------------~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t 498 (817)
.+++|+|||+||+|+||++.++|+.+. +++++++.++||||||||++++||++| ++|.+
T Consensus 322 ~~~~va~~~~tGeilA~as~p~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe~g~i~~~~ 401 (646)
T 1vqq_A 322 YGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKT 401 (646)
T ss_dssp SEEEEEEETTTTEEEEEEEESCCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHHTTSSCTTC
T ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 35289982466706777505765544211465312212233562145555545111345420178899999769979998
Q ss_pred CCCCCEEEEECCC--CEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC------
Q ss_conf 4565237880378--52666412765442256666665304402258876259723521101355655567665------
Q gi|254780752|r 499 VIMDAPIEVVSRG--KIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVL------ 570 (817)
Q Consensus 499 ~~~D~p~~~~~~~--~~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~------ 570 (817)
.+.+....+.... +.|. .+..+.++|.++|++||++|||++|++++.++|.+.+.+++++|||..+.+..+
T Consensus 402 ~~~~~g~~~~~~~~~g~~~-~~~~~~~~G~v~l~~al~~S~N~~f~~la~~lg~~~l~~~a~~fG~g~~~~~~~p~~~~~ 480 (646)
T 1vqq_A 402 SYKIDGKGWQKDKSWGGYN-VTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQ 480 (646)
T ss_dssp EEEECSSEECSSGGGTTCC-EECSSCCCEEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSSCCCCCB
T ss_pred EEEECCCCEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 7994784143467767643-346678887232120305787899999998763889998887636898888666554344
Q ss_pred -------------CCCCCCC--EEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------------6344510--0003776743220157440354466676410244301335853235566666665545
Q gi|254780752|r 571 -------------PMSLGAG--ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDE 635 (817)
Q Consensus 571 -------------s~alG~~--~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~ 635 (817)
+.++|++ .+||||||.+|++|||+|.+++||+|+++++..
T Consensus 481 ~~~~~~~~~~~la~~s~GQG~v~vTPLqmA~ayaaiAN~G~~~~P~lV~~~~~~~------------------------- 535 (646)
T 1vqq_A 481 ISNKNLDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKV------------------------- 535 (646)
T ss_dssp SCSSCCCSHHHHHHHHTTCSSCBBCHHHHHHHHHGGGTTTCEECCBCBTTSCCCE-------------------------
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCC-------------------------
T ss_conf 6776678752242204677751237999999999997498186118995578876-------------------------
Q ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCCCEEEEECCCC--------CCCCEEEEEEC---CCEEEEEE
Q ss_conf 54675543535899999999999998734804321059960467604678--------97022798456---98799999
Q gi|254780752|r 636 PEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNRPVAGKTGTTS--------SYRDTWFIGYT---PTLVVGVY 704 (817)
Q Consensus 636 ~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~~iaGKTGTt~--------~~~D~WfvG~t---p~~~~~vW 704 (817)
..++++|++++..|++||+.||+.|||+++...+.+|||||||++ +..++||+||. |+|+++||
T Consensus 536 -----~~~~vis~~~a~~l~~~m~~VV~~Gt~~~~~~~~~~vaGKTGTAe~~~~~g~~~~~~awFvgf~~d~P~~av~V~ 610 (646)
T 1vqq_A 536 -----WKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETGRQIGWFISYDKDNPNMMMAIN 610 (646)
T ss_dssp -----EECCCSCHHHHHHHHHHHHHHHHTTTTTTTCCTTSCEEEEEEEEECC------CCEEEEEEEEETTSCSCEEEEE
T ss_pred -----CCCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCEECCCCCCCCCEEEEEEEECCCCCEEEEEEE
T ss_conf -----777789999999999999999754340221158988999826570767789989806999998589996999999
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 826689827898644212179999999999748983
Q gi|254780752|r 705 VGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPS 740 (817)
Q Consensus 705 vG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~ 740 (817)
|. ++..-+...+|+.+|+|||++||+..++.+..
T Consensus 611 ve--~~~~~g~~~~g~~vA~pv~~~i~e~~~~~~~i 644 (646)
T 1vqq_A 611 VK--DVQDKGMASYNAKISGKVYDELYENGNKKYDI 644 (646)
T ss_dssp EE--CCTTTTTHHHHHHHHHHHHHHHTGGGTSCCCT
T ss_pred EE--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 97--27888866232899999999999868875799
No 14
>1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A*
Probab=100.00 E-value=1.1e-41 Score=294.16 Aligned_cols=222 Identities=16% Similarity=0.162 Sum_probs=167.7
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 53116640656666117872132344433200123356653100001278874024-66544565237880378526664
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVVSRGKIWKPE 517 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p~ 517 (817)
.+|++|+||++||+|++|+.. .||+.+ .++||||||||++++|||+|+ ++.+.+.+ . ++. .
T Consensus 19 ~~G~~vv~D~~tg~~~a~~~n-------~~~a~~-~y~PGSTfK~~~~~aaLe~G~i~~~~~~~~----~--~~~----~ 80 (254)
T 1k38_A 19 AKGTIVVADERQADRAMLVFD-------PVRSKK-RYSPASTFKIPHTLFALDAGAVRDEFQIFR----W--DGV----N 80 (254)
T ss_dssp CCEEEEEEECSSSSCCCEEES-------HHHHTC-CBCCGGGGHHHHHHHHHHHTSCCSTTCCBC----C--CSC----C
T ss_pred CCEEEEEEECCCCCEEEEECC-------HHHHCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCC----C--CCC----C
T ss_conf 838999998999857886149-------899668-889972899999999998498543211346----8--987----6
Q ss_pred ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---CCCCCCCCCEEHHHHHHHHHHHCCCC
Q ss_conf 127654422566666653044022588762597235211013556555676---65634451000037767432201574
Q gi|254780752|r 518 NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLP---VLPMSLGAGETTVLRMVSAYAVFANG 594 (817)
Q Consensus 518 N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~---~~s~alG~~~vtpl~la~aya~~AN~ 594 (817)
+..+.++|.++|++||++|||++|+++++++|.+++.+++++|||.+...+ ..++..|...+||+|||.+|++|||+
T Consensus 81 ~~~~~~~g~~tl~~Al~~S~N~~f~~la~~lG~~~~~~~~~~~G~G~~~~~~~~~~~~~~g~~~itPlq~a~~~~~ian~ 160 (254)
T 1k38_A 81 RGFAGHNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNGDYWIEGSLAISAQEQIAFLRKLYRN 160 (254)
T ss_dssp CSCTTTSSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCCCCC--CCTTTTSSCCBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 78888899979999999739399999999819088999999859999988765344001787437599999999999769
Q ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCC
Q ss_conf 40354466676410244301335853235566666665545546755435358999999999999987348043210599
Q gi|254780752|r 595 GKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLN 674 (817)
Q Consensus 595 G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~ 674 (817)
|.. +++.+...+.+||+.+ ...|
T Consensus 161 g~~------------------------------------------------~~~~~~~~~~~~~~~~---------~~~g 183 (254)
T 1k38_A 161 ELP------------------------------------------------FRVEHQRLVKDLMIVE---------AGRN 183 (254)
T ss_dssp CSS------------------------------------------------SCHHHHHHHHHHTEEE---------EETT
T ss_pred CEE------------------------------------------------CCHHHHHHHHHHHHHH---------HHCC
T ss_conf 940------------------------------------------------5800679999999883---------4259
Q ss_pred CCEEEEECCCCCCCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 604676046789702279845----6987999998266898278986442121799999999997489830067
Q gi|254780752|r 675 RPVAGKTGTTSSYRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKNIPSSRFV 744 (817)
Q Consensus 675 ~~iaGKTGTt~~~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~~p~~~f~ 744 (817)
+++||||||++ +++||+|| .|.|+++|++. .+ .+..|+..+.||.+++++.+ .-+|+.+..
T Consensus 184 ~~vaGKTGTa~--~~~WFvG~~p~~~p~~~~av~i~--~~----~~~~~~~~a~~i~~~il~~l-~~lpp~p~~ 248 (254)
T 1k38_A 184 WILRAKTGWEG--RMGWWVGWVEWPTGSVFFALNID--TP----NRMDDLFKREAIVRAILRSI-EALPPNPAV 248 (254)
T ss_dssp EEEEEEEEESS--SEEEEEEEEEETTEEEEEEEEEE--CT----TGGGGTHHHHHHHHHHHHHT-TSSCC----
T ss_pred CEEEEEECCCC--CCEEEEEEEECCCCEEEEEEEEE--CC----CCCCCHHHHHHHHHHHHHHC-CCCCCCCCC
T ss_conf 75777636898--67689999986998699999997--79----99772899999999999984-899998777
No 15
>1k55_A Beta lactamase OXA-10; antibiotic resistance, carbamylation, hydrolase; HET: KCX SO4; 1.39A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1e4d_A* 1ewz_A 1k54_A* 1e3u_A* 1k56_A* 1k57_A* 3lce_A* 1k4f_A* 1k4e_A* 1k6r_A* 1k6s_A* 2wgv_A* 2wgw_A* 1fof_A 1e3u_D 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2rl3_A* ...
Probab=100.00 E-value=1.6e-41 Score=293.16 Aligned_cols=212 Identities=17% Similarity=0.186 Sum_probs=166.0
Q ss_pred CCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCEEEE
Q ss_conf 553116640656666117872132344433200123356653100001278874024-6654456523788037852666
Q gi|254780752|r 438 KVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVVSRGKIWKP 516 (817)
Q Consensus 438 ~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p 516 (817)
.++|++|+|||+||++++ +++|||+++ ++||||||||++++|||+|+ +|.+.+.+ .+ +..
T Consensus 16 ~~~G~~v~~d~~tg~~~~---------~~~~ra~~~-~~PGStfKp~~~~aaLe~G~i~~~~~~~~-----~~-g~~--- 76 (246)
T 1k55_A 16 AVNGVFVLCKSSSKSCAT---------NDLARASKE-YLPASTFKIPNAIIGLETGVIKNEHQVFK-----WD-GKP--- 76 (246)
T ss_dssp TCCEEEEEEESSTTSEEE---------SCHHHHTCC-BCCGGGGHHHHHHHHHHTTSSCSTTCEEC-----CC-SCC---
T ss_pred CCCEEEEEEECCCCCEEE---------ECHHHHHCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCC-----CC-CCC---
T ss_conf 783589999899996886---------376676268-79974389999999998089997445536-----89-956---
Q ss_pred EECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---CCCCCCCCCEEHHHHHHHHHHHCCC
Q ss_conf 4127654422566666653044022588762597235211013556555676---6563445100003776743220157
Q gi|254780752|r 517 ENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLP---VLPMSLGAGETTVLRMVSAYAVFAN 593 (817)
Q Consensus 517 ~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~---~~s~alG~~~vtpl~la~aya~~AN 593 (817)
++.+.++|.++|++||++|||++++++++++|++++.+++++|||.....+ ..+...|...+||+||+++|++|||
T Consensus 77 -~~~~~~~g~~tl~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~g~~~~~~~~~~~~~~g~~~iTPlq~a~~~~~ian 155 (246)
T 1k55_A 77 -RAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYL 155 (246)
T ss_dssp -CSSGGGSSCEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCCCCSCTTTTTTTSSCCBCHHHHHHHHHHHHT
T ss_pred -CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf -6767779997999999974829999999983989999999983999887888765344469865569999999999972
Q ss_pred CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCC
Q ss_conf 44035446667641024430133585323556666666554554675543535899999999999998734804321059
Q gi|254780752|r 594 GGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRL 673 (817)
Q Consensus 594 ~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~ 673 (817)
+|.. ++|+++..+.+||+.++. .
T Consensus 156 gg~~------------------------------------------------~sp~~~~~~~~~m~~~~~---------~ 178 (246)
T 1k55_A 156 NKLS------------------------------------------------ASKENQLIVKEALVTEAA---------P 178 (246)
T ss_dssp TCSS------------------------------------------------SCHHHHHHHHHHTEEEEE---------T
T ss_pred CCCC------------------------------------------------CCHHHHHHHHHHHHHHHH---------H
T ss_conf 9987------------------------------------------------788999999999998776---------6
Q ss_pred CCCEEEEECCC-----CCCCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 96046760467-----89702279845----69879999982668982789864421217999999999
Q gi|254780752|r 674 NRPVAGKTGTT-----SSYRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKE 733 (817)
Q Consensus 674 ~~~iaGKTGTt-----~~~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~ 733 (817)
+..++|||||+ ++..|+||||| .|.|+++|++..++ ..++..+++|.+++|+.
T Consensus 179 g~~vagKTGTa~~g~~~~~~~aWFvGf~p~~~p~~~~av~i~~~~-------~~~~~~a~~i~~~il~~ 240 (246)
T 1k55_A 179 EYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDN-------ESKLPLRKSIPTKIMES 240 (246)
T ss_dssp TEEEEEEEEECCCCCSSSCEEEEEEEEEEETTEEEEEEEEEEESC-------GGGTTHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCC-------CCCCHHHHHHHHHHHHH
T ss_conf 422144451222057899853899999987998599999997799-------88758899999999997
No 16
>1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal transduction, signaling protein; HET: CAZ EPE; 1.75A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A* 1xa7_A*
Probab=100.00 E-value=4.3e-41 Score=290.25 Aligned_cols=211 Identities=16% Similarity=0.179 Sum_probs=166.3
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 53116640656666117872132344433200123356653100001278874024-66544565237880378526664
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVVSRGKIWKPE 517 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p~ 517 (817)
.+|++|+||++||++.++ +.||+.+ +++||||||||++++|||+|+ ++.+.+.+.+ +..+.
T Consensus 29 ~~G~~v~~d~~~g~~~~~---------n~~~~~~-~y~PGStfK~~~~~aaLe~G~i~~~~~~~~~~------~~~~~-- 90 (255)
T 1xkz_A 29 NSGSFVMYSMKKDKYYIY---------NEKESRK-RYSPNSTYKIYLAMFGLDRHIINDENSRMSWN------HKHYP-- 90 (255)
T ss_dssp CEEEEEEEETTTTEEEEE---------SHHHHTS-EECCGGGGHHHHHHHHHHTTSSCSSCCCBCCC------CCCCS--
T ss_pred CCEEEEEEECCCCCEECC---------CHHHHCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCEECCC------CCCCC--
T ss_conf 842699998999976521---------8899658-78995489999999999869988875122599------88705--
Q ss_pred ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--CCCCCCEEHHHHHHHHHHHCCCCC
Q ss_conf 127654422566666653044022588762597235211013556555676656--344510000377674322015744
Q gi|254780752|r 518 NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLP--MSLGAGETTVLRMVSAYAVFANGG 595 (817)
Q Consensus 518 N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s--~alG~~~vtpl~la~aya~~AN~G 595 (817)
.+.++|.++|++||++|||++++++++++|.+++.+++++|||.......+. +..|...+||||||.+|++|||+|
T Consensus 91 --~~~~~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~vTPlq~a~~~~~ian~g 168 (255)
T 1xkz_A 91 --FDAWNKEQDLNTAMQNSVNWYFERISDQIPKNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVFKNMMEQN 168 (255)
T ss_dssp --SGGGSSCBCHHHHHHTTCHHHHHHHHTTSCHHHHHHHHHHHTCTTCCCTTSSSTTTTSSCCEEHHHHHHHHHHHHHCC
T ss_pred --CCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf --787789989999999767499999887617226899999808898874557544437975354999999999997099
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCC
Q ss_conf 03544666764102443013358532355666666655455467554353589999999999999873480432105996
Q gi|254780752|r 596 KQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNR 675 (817)
Q Consensus 596 ~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~ 675 (817)
.. ++++++..+++||+.++. .|+
T Consensus 169 ~~------------------------------------------------~s~~~~~~~~~~m~~~~~---------~G~ 191 (255)
T 1xkz_A 169 NH------------------------------------------------FSKKAKNQLSSSLLIKKN---------EKY 191 (255)
T ss_dssp -C------------------------------------------------SCHHHHHHHHHHHEEEEC---------SSE
T ss_pred CC------------------------------------------------CCHHHHHHHHHHHHHHHH---------CCC
T ss_conf 66------------------------------------------------688899999999998875---------585
Q ss_pred CEEEEECCCC---CCCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0467604678---9702279845----698799999826689827898644212179999999999
Q gi|254780752|r 676 PVAGKTGTTS---SYRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEA 734 (817)
Q Consensus 676 ~iaGKTGTt~---~~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~ 734 (817)
.++|||||++ +..++||+|| .|.|+++|.+- + ...|+..|+||+++||+..
T Consensus 192 ~vagKTGTa~~~~~~~~~WFvGy~p~~~p~~~vav~i~--~------~~~~~~~Aapi~~~il~~l 249 (255)
T 1xkz_A 192 ELYGKTGTGIVNGKYNNGWFVGYVITNHDKYYFATHLS--D------GKPSGKNAELISEKILKEM 249 (255)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEEEE--E------SSCCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEECCCCCCCEEEEEEEECCCCEEEEEEEEE--C------CCCCCHHHHHHHHHHHHHH
T ss_conf 00020122141899651899999987998599999996--7------9988727999999999985
No 17
>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A*
Probab=100.00 E-value=8.8e-39 Score=274.87 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=160.9
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 53116640656666117872132344433200123356653100001278874024-66544565237880378526664
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVVSRGKIWKPE 517 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p~ 517 (817)
.+|++|++|++||+|+++ + .||+.+ +++||||||||++++|||+|+ ++++.+.+. + . .+
T Consensus 22 ~~G~~v~~d~~tg~~~~~------n---~~~~~~-~y~PGStfK~~t~~aaLe~g~~~~~~~~~~~-----~--~---~~ 81 (246)
T 2iwb_A 22 FDGSFVLYNEREQAYSIY------N---EPESKQ-RYSPNSTYKIYLALMAFDQNLLSLNHTEQQW-----D--K---HQ 81 (246)
T ss_dssp SEEEEEEEETTTTEEEEE------S---HHHHTB-CBCCGGGGHHHHHHHHHHTTSSBTTBCCBCC-----C--C---CC
T ss_pred CCEEEEEEECCCCCEEEE------C---HHHHCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----C--C---CC
T ss_conf 734699997899967605------8---889668-7799636999999999984997885434169-----9--8---66
Q ss_pred ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCEEHHHHHHHHHHHCCCCC
Q ss_conf 1276544225666666530440225887625972352110135565556766--56344510000377674322015744
Q gi|254780752|r 518 NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPV--LPMSLGAGETTVLRMVSAYAVFANGG 595 (817)
Q Consensus 518 N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~--~s~alG~~~vtpl~la~aya~~AN~G 595 (817)
+....++|.++|++||++|||++++++++++|.+++.+++++|||.....+. .++..|...+||+|||++|++|||+|
T Consensus 82 ~~~~~~~g~~~l~~Al~~S~N~~~~~la~~lG~~~~~~~~~~~G~g~~~~~~~~~~~~~g~~~iTPlqma~~~~~ian~g 161 (246)
T 2iwb_A 82 YPFKEWNQDQNLNSSMKYSVNWYYENLNKHLRQDEVKSYLDLIEYGNEEISGNENYWNESSLKISAIEQVNLLKNMKQHN 161 (246)
T ss_dssp CSSGGGSSCBCHHHHHHTTCHHHHHHHHTTSCHHHHHHHHHHHTCTTCCCCSCSSTTSSSSCCBCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 17898899707788422456299999998728607899999828999988987642226875256999999999998389
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCC
Q ss_conf 03544666764102443013358532355666666655455467554353589999999999999873480432105996
Q gi|254780752|r 596 KQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNR 675 (817)
Q Consensus 596 ~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~ 675 (817)
.. ++|+++..+.++|+.++ ..+.
T Consensus 162 ~~------------------------------------------------~~p~~~~~~~~~~~~~~---------~~~~ 184 (246)
T 2iwb_A 162 MH------------------------------------------------FDNKAIEKVENSMTLKQ---------KDTY 184 (246)
T ss_dssp SS------------------------------------------------SCHHHHHHHHHHTEEEE---------CSSE
T ss_pred CC------------------------------------------------CCCHHHHHHHHHHHHHH---------HHHH
T ss_conf 67------------------------------------------------88325567777777765---------4234
Q ss_pred CEEEEECC--CCC-CCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 04676046--789-702279845----698799999826689827898644212179999999999
Q gi|254780752|r 676 PVAGKTGT--TSS-YRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEA 734 (817)
Q Consensus 676 ~iaGKTGT--t~~-~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~ 734 (817)
.++||||| +++ ..++||+|| .|+|+++|++-.+ ...|+..|+||+++||+.+
T Consensus 185 ~~~~ktgTg~~~~~~~~aWFvGf~p~~~p~~~~~v~v~~~-------~~~~~~~A~pi~~~Il~~l 243 (246)
T 2iwb_A 185 KYVGKTGTGIVNHKEANGWFVGYVETKDNTYYFATHLKGE-------DNANGEKAQQISERILKEM 243 (246)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEESSCEEEEEEEEECS-------SCBCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECC-------CCCCCHHHHHHHHHHHHHC
T ss_conf 4321101044689887889999998899959999999789-------9887478999999999971
No 18
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=100.00 E-value=6.8e-39 Score=275.63 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=164.0
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 5311664065666611787213234443320012335665310000127887402-466544565237880378526664
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIWKPE 517 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~ 517 (817)
.+|++|+||++||+++++ +.||+.+ +++||||||||++++|||+| +++.+.+.+.. + | .
T Consensus 33 ~~G~~vv~d~~tg~~~~~---------n~n~~~~-~~~PGSTfK~~~~~aaLe~g~~~~~~~~~~~~------~--~--~ 92 (262)
T 1nrf_A 33 ASGGFVLFNSNRKKYTIY---------NRKESTS-RFAPASTYKVFSALLALESGIITKNDSHMTWD------G--T--Q 92 (262)
T ss_dssp EEEEEEEEETTTTEEEEE---------CHHHHHS-CBCCGGGGHHHHHHHHHHHTSSCSSCCCBCCC------C--C--C
T ss_pred CCEEEEEEECCCCCEEEE---------CHHHHCC-CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCC------C--C--C
T ss_conf 855899998999978631---------9899757-78997528999999999859999987456599------8--5--0
Q ss_pred ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--CCCCCCEEHHHHHHHHHHHCCCCC
Q ss_conf 127654422566666653044022588762597235211013556555676656--344510000377674322015744
Q gi|254780752|r 518 NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVLP--MSLGAGETTVLRMVSAYAVFANGG 595 (817)
Q Consensus 518 N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~s--~alG~~~vtpl~la~aya~~AN~G 595 (817)
+....++|.++|++||++|||+++++|++++|.+++.+++++|||.....+.+. ...|...+||+|||++|++|||+|
T Consensus 93 ~~~~~~~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~g~~~~~~p~~~~~~g~~~vTPlq~a~~~~~ian~G 172 (262)
T 1nrf_A 93 YPYKEWNQDQDLFSAMSSSTTWYFQKLDRQIGEDHLRHYLKSIHYGNEDFSVPADYWLDGSLQISPLEQVNILKKFYDNE 172 (262)
T ss_dssp CSSTTTSSCBCHHHHHHHTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCCCSCTTTTTTSSSSCBCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 36788899979999999757098852324258578999999839999888986378747975523999999999995468
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCCC
Q ss_conf 03544666764102443013358532355666666655455467554353589999999999999873480432105996
Q gi|254780752|r 596 KQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLNR 675 (817)
Q Consensus 596 ~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~~ 675 (817)
..++|++++ .+.++|. .+...++
T Consensus 173 ~~~~p~~~~------------------------------------------------~~~~~~~---------~~~~~~~ 195 (262)
T 1nrf_A 173 FDFKQSNIE------------------------------------------------TVKDSIR---------LEESNGR 195 (262)
T ss_dssp TCCCHHHHH------------------------------------------------HHHHHHE---------EEEETTE
T ss_pred CCCCHHHHH------------------------------------------------HHHHHHH---------HHHHHCC
T ss_conf 877889999------------------------------------------------9987876---------6544123
Q ss_pred CEEEEECCCC---CCCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0467604678---9702279845----698799999826689827898644212179999999999
Q gi|254780752|r 676 PVAGKTGTTS---SYRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEA 734 (817)
Q Consensus 676 ~iaGKTGTt~---~~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~ 734 (817)
++||||||++ +..++||+|| .|.|+++|-+ |++ ...|+..|+||++++++..
T Consensus 196 ~vagKTGTa~~~~~~~~~WfvGy~p~~~p~~~~~v~i--e~~-----~~~~~~~A~pI~~~il~~l 254 (262)
T 1nrf_A 196 VLSGKTGTSVINGELHAGWFIGYVETADNTFFFAVHI--QGE-----KRAAGSSAAEIALSILDKK 254 (262)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEECSSCEEEEEEEE--EES-----CSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEE--ECC-----CCCCCHHHHHHHHHHHHHC
T ss_conf 3566402543689986289999998799859999999--889-----9875078999999999985
No 19
>3g4p_A Beta-lactamase OXA-24; plasmid, B-lactamases, enzyme mechanism, carbapenem, resistance, hydrolase; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A*
Probab=100.00 E-value=4.7e-39 Score=276.68 Aligned_cols=210 Identities=14% Similarity=0.141 Sum_probs=162.0
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 5311664065666611787213234443320012335665310000127887402-466544565237880378526664
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIWKPE 517 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~~p~ 517 (817)
.+|++|++|++||+|.++ .+|||.+. ++||||||||++++|||+| ++|.+++.+. +..
T Consensus 20 ~~G~~v~~d~~~~~~~~~---------~~~ra~~~-~~PGSTfK~~~~~aaLe~G~~~~~~~~~~~-------g~~---- 78 (244)
T 3g4p_A 20 TQGVIIIKEGKNLSTYGN---------ALARANKE-YVPASTFKMLNALIGLENHKATTNEIFKWD-------GKK---- 78 (244)
T ss_dssp CCEEEEEEETTEEEEEES---------CGGGGGCC-BCCGGGHHHHHHHHHHHTTSCCSSCCBCCC-------SCC----
T ss_pred CCEEEEEEECCCCCEECC---------CHHHHCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-------CCC----
T ss_conf 863899997898866435---------40011378-799647999999999986999974223478-------965----
Q ss_pred ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC---CCCCCCCCEEHHHHHHHHHHHCCCC
Q ss_conf 1276544225666666530440225887625972352110135565556766---5634451000037767432201574
Q gi|254780752|r 518 NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPV---LPMSLGAGETTVLRMVSAYAVFANG 594 (817)
Q Consensus 518 N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~---~s~alG~~~vtpl~la~aya~~AN~ 594 (817)
+..+.++|.++|++||++|||+++++++.++|.+++.+++++|||.....+. .++.+|...+||+||+++|++|||+
T Consensus 79 ~~~~~~~g~~~l~~Al~~S~N~~~~~l~~~lG~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~iTp~q~a~~~~~lan~ 158 (244)
T 3g4p_A 79 RTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHN 158 (244)
T ss_dssp CSSGGGSSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHHTCTTCCCTTCTTTHHHHSSCCBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCC
T ss_conf 05788788869999999638599999998708387899999789999889865556110787018699999999999709
Q ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCCC
Q ss_conf 40354466676410244301335853235566666665545546755435358999999999999987348043210599
Q gi|254780752|r 595 GKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRLN 674 (817)
Q Consensus 595 G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~~ 674 (817)
|.. ++++++..+.++|+.++ ..|
T Consensus 159 g~~------------------------------------------------~~~~~~~~v~~~m~~~~---------~~g 181 (244)
T 3g4p_A 159 RLP------------------------------------------------FKLETQEEVKKMLLIKE---------VNG 181 (244)
T ss_dssp CSS------------------------------------------------SCHHHHHHHHHTTEEEE---------ETT
T ss_pred CCC------------------------------------------------CCHHHHHHHHHHHHHHH---------HHC
T ss_conf 805------------------------------------------------58558999999999755---------432
Q ss_pred CCEEEEECCC--CCCCCEEEEEECC-----CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 6046760467--8970227984569-----879999982668982789864421217999999999
Q gi|254780752|r 675 RPVAGKTGTT--SSYRDTWFIGYTP-----TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKE 733 (817)
Q Consensus 675 ~~iaGKTGTt--~~~~D~WfvG~tp-----~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~ 733 (817)
+.+||||||+ ++..|+||+||.| .|+++|++ |.+ ...++..|+||.+++++.
T Consensus 182 ~~~aGKTGT~~~~~~~~~WFvG~~~~~~~~~~~~~v~~--~~~-----~~~~~~~a~~I~~~il~~ 240 (244)
T 3g4p_A 182 SKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNL--EMK-----EGMSGSIRNEITYKSLEN 240 (244)
T ss_dssp EEEEEEEEEECSSSSEEEEEEEEEECTTSCEEEEEEEE--EEC-----TTCCTHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEE--ECC-----CCCCHHHHHHHHHHHHHH
T ss_conf 22378587112689987899997686989889999996--379-----866559999999999998
No 20
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae}
Probab=100.00 E-value=2.8e-37 Score=264.94 Aligned_cols=213 Identities=15% Similarity=0.188 Sum_probs=164.2
Q ss_pred CCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCEEEEECCCCEEEE
Q ss_conf 553116640656666117872132344433200123356653100001278874024-6654456523788037852666
Q gi|254780752|r 438 KVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGY-TPASVIMDAPIEVVSRGKIWKP 516 (817)
Q Consensus 438 ~~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~-tp~t~~~D~p~~~~~~~~~~~p 516 (817)
.++|++|++|+++|++++ +++|||+|. ++|||||||+++++|||+|. +|.+.+.+. ++..|..
T Consensus 39 ~~~G~~vi~d~~~~~~~~---------~~~nRA~~~-~~PgSTFKi~~a~aaLe~G~i~~~~~~~~~------~g~~~~~ 102 (265)
T 3hbr_A 39 KSQGVVVLWNENKQQGFT---------NNLKRANQA-FLPASTFKIPNSLIALDLGVVKDEHQVFKW------DGQTRDI 102 (265)
T ss_dssp TCCEEEEEEETTTTEEEE---------SCHHHHTCE-ECCGGGGHHHHHHHHHHTTSSCCTTCCBCC------CSCCCSS
T ss_pred CCCEEEEEEECCCCCEEE---------ECHHHHCCC-CCCCCHHHHHHHHHHHHCCCCCCCCEEECC------CCCCCCC
T ss_conf 885689999889995775---------066565278-899733899999999986985997704418------9956558
Q ss_pred EECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-CC--CCCCCCEEHHHHHHHHHHHCCC
Q ss_conf 41276544225666666530440225887625972352110135565556766-56--3445100003776743220157
Q gi|254780752|r 517 ENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPV-LP--MSLGAGETTVLRMVSAYAVFAN 593 (817)
Q Consensus 517 ~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~-~s--~alG~~~vtpl~la~aya~~AN 593 (817)
+.+.+.++|++||++|||++++++++++|.+++.+++++||++....+. .. ...|...+||+|||.+|++|+|
T Consensus 103 ----~~~~~~~tl~~Al~~S~N~~f~~l~~~iG~~~~~~~~~~~G~G~~~~~~~~~~~w~~g~l~iTPlq~a~~~~~ian 178 (265)
T 3hbr_A 103 ----ATWNRDHNLITAMKYSVVPVYQEFARQIGEARMSKMLHAFDYGNEDISGNVDSFWLDGGIRISATEQISFLRKLYH 178 (265)
T ss_dssp ----GGGSSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHHTCTTCCC-CCTTTHHHHSSCCEEHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf ----8758998999999970809999997772937789999986999988898866440379700108999999999983
Q ss_pred CCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHHCCC
Q ss_conf 44035446667641024430133585323556666666554554675543535899999999999998734804321059
Q gi|254780752|r 594 GGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGKVRL 673 (817)
Q Consensus 594 ~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a~~~ 673 (817)
+|.. +++++...+.++|+. ....
T Consensus 179 ~~~~------------------------------------------------~s~~~~~~v~~~m~~---------~~~~ 201 (265)
T 3hbr_A 179 NKLH------------------------------------------------VSERSQRIVKQAMLT---------EANG 201 (265)
T ss_dssp TCSS------------------------------------------------SCHHHHHHHHHHTEE---------EECS
T ss_pred CCCC------------------------------------------------CCHHHHHHHHHHHHH---------HHCC
T ss_conf 9968------------------------------------------------888999999999886---------3315
Q ss_pred CCCEEEEECCCCC--CCCEEEEEE----CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9604676046789--702279845----698799999826689827898644212179999999999
Q gi|254780752|r 674 NRPVAGKTGTTSS--YRDTWFIGY----TPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEA 734 (817)
Q Consensus 674 ~~~iaGKTGTt~~--~~D~WfvG~----tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~ 734 (817)
++.++|||||++. ..++||||| .|.|+.+|.+- . .+..|+..++||.+++++..
T Consensus 202 g~~vaGKTGTa~~~~~~~~WfvG~~~~~~~~~~~av~i~--~-----~~~~~~~~a~~i~~~il~~~ 261 (265)
T 3hbr_A 202 DYIIRAKTGYSTRIEPKIGWWVGWVELDDNVWFFAMNMD--M-----PTSDGLGLRQAITKEVLKQE 261 (265)
T ss_dssp SCEEEEEEEEECSSSSCEEEEEEEEECSSCEEEEEEEEE--C-----SSGGGTTHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEE--C-----CCCCCHHHHHHHHHHHHHHC
T ss_conf 805785103554689986899999987998699999975--6-----99887599999999999985
No 21
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance, plasmid, transposable element; HET: KCX DRW; 1.40A {Escherichia coli} PDB: 1m6k_A*
Probab=100.00 E-value=1.1e-37 Score=267.52 Aligned_cols=215 Identities=14% Similarity=0.141 Sum_probs=152.8
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEECCCCEEEE
Q ss_conf 531166406566661178721323444332001233-5665310000127887402-46654456523788037852666
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAM-RQPGSCFKPIVYAAALDSG-YTPASVIMDAPIEVVSRGKIWKP 516 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~-rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~~~~~~~~~~~p 516 (817)
.+|++|++|+.+|+++++ |||+.... ++||||||||++++|||+| ++|++.+.+.+ ..|..
T Consensus 15 ~~g~~v~~d~~~~~~~~~----------~n~~~~~~~y~PGSTfK~~~~~aaLe~g~i~~~~~~~~~~-------~~~~~ 77 (251)
T 3isg_A 15 TEGCFLLYDASTNAEIAQ----------FNKAKCATQMAPDSTFKIALSLMAFDAEIIDQKTIFKWDK-------TPKGM 77 (251)
T ss_dssp EEEEEEEEETTTCCEEEE----------ECHHHHTCCBCCGGGHHHHHHHHHHHTTSCCTTCCBCCCS-------SCCSS
T ss_pred CCCEEEEEECCCCCEECC----------CCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECC-------CCCCC
T ss_conf 652499997898985003----------0867746777995359999999999859988995577326-------56676
Q ss_pred EECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC---------CCCCCCCEEHHHHHHHH
Q ss_conf 412765442256666665304402258876259723521101355655567665---------63445100003776743
Q gi|254780752|r 517 ENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPVL---------PMSLGAGETTVLRMVSA 587 (817)
Q Consensus 517 ~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~~---------s~alG~~~vtpl~la~a 587 (817)
..++|.++|++||++|||+++++++.++|.+++.+++++|||.....+.. ....|...+||+||+.+
T Consensus 78 ----~~~~~~~tl~~Al~~S~N~~~~~la~~lG~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~g~~~iTPlq~a~~ 153 (251)
T 3isg_A 78 ----EIWNSNHTPKTWMQFSVVWVSQEITQKIGLNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQF 153 (251)
T ss_dssp ----GGGSSCBCHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTCTTCCCCCC--CCCHHHHTTSSSSCCBCHHHHHHH
T ss_pred ----CCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHHHHHH
T ss_conf ----6779982989999871579999998763831378999976999988888642223556631147601459999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 22015744035446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817)
|++|||+|..+.|+.+ ..+.++|..++..
T Consensus 154 ~~~ian~~~~~~~~~~------------------------------------------------~~i~~~m~~~~~~--- 182 (251)
T 3isg_A 154 LRKIINHNLPVKNSAI------------------------------------------------ENTIENMYLQDLD--- 182 (251)
T ss_dssp HHHHHTTCSSSCHHHH------------------------------------------------HHHHHHTEEEECT---
T ss_pred HHHHHCCCCCCCHHHH------------------------------------------------HHHHHHHHHHEEC---
T ss_conf 9999839931385899------------------------------------------------9999997562332---
Q ss_pred EHHCCCCCCEEEEECCCC----CCCCEEEEEECCC-----EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 321059960467604678----9702279845698-----799999826689827898644212179999999999
Q gi|254780752|r 668 TGKVRLNRPVAGKTGTTS----SYRDTWFIGYTPT-----LVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEA 734 (817)
Q Consensus 668 ~~a~~~~~~iaGKTGTt~----~~~D~WfvG~tp~-----~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~ 734 (817)
.|..+||||||++ +..|+||+||.|. |+++|-+ ++.. +.+.+++..|.+||.++|+..
T Consensus 183 -----~g~~vaGKTGTa~~~~~~~~~~WFvGy~p~~~~~~~~~~v~~---~~~~-~~~~~~~~~a~~i~~~il~~l 249 (251)
T 3isg_A 183 -----NSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSAL---TGNL-GSNLTSSIKAKKNAITILNTL 249 (251)
T ss_dssp -----TSCEEEEEEEEEECTTSSCEEEEEEEEEECTTCCEEEEEEEE---EECC-TTSCCHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEE---ECCC-CCCCHHHHHHHHHHHHHHHHC
T ss_conf -----664213663775478999853999999874899889999998---1797-776234799999999999875
No 22
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi}
Probab=99.93 E-value=2.8e-27 Score=198.48 Aligned_cols=235 Identities=14% Similarity=0.071 Sum_probs=172.8
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEE-CCCCE
Q ss_conf 531166406566661178721323444332001233566531000012788740---2-466544565237880-37852
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVV-SRGKI 513 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~-~~~~~ 513 (817)
+++++||+|..||+|+||-+ ..+++|||+||+|++++|||. | +.+++.+...+.... .+...
T Consensus 20 ~~~~~~V~D~~tG~~la~n~-------------d~~~~pgSt~K~~ta~aaLe~~~~G~i~~~~~v~~~~~~~~~~~~~~ 86 (318)
T 2wuq_A 20 LTGSFLVRDLYTGEELGIDP-------------DTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITTPGPTG 86 (318)
T ss_dssp EEEEEEEEETTTCCEEEEST-------------TCCEECGGGGHHHHHHHHHHHHHTTSSCTTCEEEECCCCCCSSSCCG
T ss_pred CEEEEEEEECCCCCEEEECC-------------CCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 84999999998998899889-------------97373797999999999998765499787545664035313799740
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-------------------CCCCC
Q ss_conf 66641276544225666666530440225887625972352110135565556766-------------------56344
Q gi|254780752|r 514 WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDKMLPV-------------------LPMSL 574 (817)
Q Consensus 514 ~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~~~~~-------------------~s~al 574 (817)
|...+....+.....+..++..|+|+++..+...+|.+.+..++++||+....... ....+
T Consensus 87 ~~~~~~~~~~s~~~~~~~~~~~S~n~a~~~l~~~~g~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (318)
T 2wuq_A 87 LSRFRHPARVAVDDLLYLSTSVSDGTASDALFEITPPAQVEQMVREWGFRDLTVRHSMRELSETPAERFESADAHLAHAL 166 (318)
T ss_dssp GGGCSSCEEEEHHHHHHHHHHSCCHHHHHHHHHHSCHHHHHHHHHHTTCCSCCCCCCTTC--------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 13578887403999999999827722667788752999875478870887644656665456665555552024566642
Q ss_pred CCCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHH
Q ss_conf 510000377674322015744035446667641024430-1335853235566666665545546755435358999999
Q gi|254780752|r 575 GAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKT-IFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQ 653 (817)
Q Consensus 575 G~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~v-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~ 653 (817)
+....++.++...+++++|+|....|+.+.++...-.+. ... .......++++++++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 226 (318)
T 2wuq_A 167 AISAGTSGRGHRVPQLDVARANTGTARAFVDLLEALWAPVLTG--------------------PRPGRTSRALPPEPAAR 226 (318)
T ss_dssp ----------CCSGGGCTTTSCEECHHHHHHHHHHHHGGGCCC--------------------C-------CCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC--------------------CCCCCCCCCCCHHHHHH
T ss_conf 3656576789999999852883034899999997502565455--------------------66543345679999999
Q ss_pred HHHHHHHHHHCCCEEHH-CCCCCCEEEEECCCCCCC-CEEEEEEC--CCEEEEEEEE
Q ss_conf 99999998734804321-059960467604678970-22798456--9879999982
Q gi|254780752|r 654 ITSMLEGVIKHGTATGK-VRLNRPVAGKTGTTSSYR-DTWFIGYT--PTLVVGVYVG 706 (817)
Q Consensus 654 ~~~~L~~vv~~GTg~~a-~~~~~~iaGKTGTt~~~~-D~WfvG~t--p~~~~~vWvG 706 (817)
+.++|+.++..|++.+. ...+.+++|||||++..+ |+||+.+. |.|+++||+.
T Consensus 227 l~~~m~~~~~~g~~~~~~~~~g~~vagKTGT~~~~~~~~~~~~~~d~~~~~v~V~~~ 283 (318)
T 2wuq_A 227 LRELMAANLLRHRLAPDFASDAATWSSKTGTLLNLRHEVGVVEHADGQVFAVAVLTE 283 (318)
T ss_dssp HHHHHHTCCCCSSSHHHHCBTTEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEE
T ss_conf 999987346488720134789988999802577831669999968989499999980
No 23
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioesterase, DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*
Probab=99.23 E-value=1.1e-10 Score=88.44 Aligned_cols=199 Identities=15% Similarity=0.177 Sum_probs=122.4
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEE
Q ss_conf 53116640656666117872132344433200123356653100001278874---02-466544565237880378526
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIW 514 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~ 514 (817)
.+.++.++|..||+++++-+ +..++|+|++|.++.+++++ +| +++++.+ .+.. ..|
T Consensus 34 ~~~~v~v~dl~tg~~~~~n~-------------d~~~~~AS~~Kl~~~~~~l~~v~~G~l~ld~~v-----~i~~--~~~ 93 (298)
T 2j9o_A 34 LTAGLYFFNLDSGASLNVGG-------------DQVFPAASTIKFPILVAFFKAVDEGRVTLQERL-----TMRP--DLI 93 (298)
T ss_dssp CEEEEEEEETTTCEEEEEBT-------------TSCEECGGGGHHHHHHHHHHHHHTTSSCSSCEE-----ECCG--GGC
T ss_pred CEEEEEEEECCCCCEEEECC-------------CCCEECHHHHHHHHHHHHHHHHHCCCCCCCCCE-----EECH--HHC
T ss_conf 74899999899998899889-------------951325579999999999999874998965566-----8737--760
Q ss_pred EEEECCC---CCCCHHHHHHH----HHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCC-CCCCCCEEHHHHHH
Q ss_conf 6641276---54422566666----653044022588762597-235211013556555676656-34451000037767
Q gi|254780752|r 515 KPENYSK---NFSGASTLRFG----LEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLPVLP-MSLGAGETTVLRMV 585 (817)
Q Consensus 515 ~p~N~~~---~~~G~itl~~A----l~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~~~s-~alG~~~vtpl~la 585 (817)
.+.+... .....+|+++. +..|-|+.+-.|+..+|. +.+-.+++++|+.+-...... ..-+....|+-+|+
T Consensus 94 ~~~~~~~~~~~~g~~~tl~~ll~~mi~~SdN~Aa~~L~~~~g~~~~~n~~~~~~G~~~t~~~~~~~~~~~~~~~ta~d~~ 173 (298)
T 2j9o_A 94 APEAGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRLGGAAELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLA 173 (298)
T ss_dssp CCSSCSGGGSCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHTTCHHHHHHHHHHTTCSSCBCCSCTTCTTCCSEECHHHHH
T ss_pred CCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHH
T ss_conf 57997520006997668999999999854488999999995774999999997699771522788765668867999999
Q ss_pred HHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 43220157440354466676410244301335853235566666665545546755435358999999999999987348
Q gi|254780752|r 586 SAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHG 665 (817)
Q Consensus 586 ~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~G 665 (817)
..+..|.++. .+++..+..+.+.|+....+.
T Consensus 174 ~ll~~l~~~~-------------------------------------------------~~~~~~~~~l~~~m~~~~~~~ 204 (298)
T 2j9o_A 174 TLMLKIGQGE-------------------------------------------------ILSPRSRDRLLDIMRRTVTNT 204 (298)
T ss_dssp HHHHHHHTTC-------------------------------------------------SSCHHHHHHHHHHHTSCSCCS
T ss_pred HHHHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999998189-------------------------------------------------789899999999997087876
Q ss_pred CEEHHCCCCCCEEEEECCCCCCC-CEEEEEECC---CEEEEEEEEC
Q ss_conf 04321059960467604678970-227984569---8799999826
Q gi|254780752|r 666 TATGKVRLNRPVAGKTGTTSSYR-DTWFIGYTP---TLVVGVYVGY 707 (817)
Q Consensus 666 Tg~~a~~~~~~iaGKTGTt~~~~-D~WfvG~tp---~~~~~vWvG~ 707 (817)
.-......+..+++|||++...+ |+.++ ++| .|+++|....
T Consensus 205 ~i~~~lp~~~~v~~KtG~~~~~~~d~giv-~~~~g~~yi~avl~~~ 249 (298)
T 2j9o_A 205 LLPAGLGKGATIAHKTGDIGIVVGDAGMV-DMPNGQRYVAAMMVKR 249 (298)
T ss_dssp SGGGGSCTTCEEEEEEEECSSEEEEEEEE-ECTTSCEEEEEEEEEC
T ss_pred CHHHHCCCCCEEEEECCCCCCCCEEEEEE-EECCCCEEEEEEEECC
T ss_conf 30231899988987635612610589999-9479988999999479
No 24
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Probab=99.17 E-value=9.1e-11 Score=88.89 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=128.9
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECC----CCEEE
Q ss_conf 31166406566661178721323444332001233566531000012788740246654456523788037----85266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSR----GKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~----~~~~~ 515 (817)
..+++++|..||+++++- . .-.++|+|++|+++..++|+..- ... + |.++.+... +..+.
T Consensus 14 ~~gv~~~d~~tG~~~~~n------~-------d~~~~~AS~~Kl~~~~~~l~~~~-~g~-L-~~~~~~~~~~~~~~~~~~ 77 (258)
T 1ghp_A 14 HIGVYALDTKSGKEVKFN------S-------DKRFAYASTSKAINSAILLEQVP-YNK-L-NKKVHINKDDIVAYSPIL 77 (258)
T ss_dssp EEEEEEEETTTCCEEEES------T-------TSCEECGGGHHHHHHHHHHHHSC-GGG-G-GCEEEECGGGCCSSCTTG
T ss_pred EEEEEEEECCCCCEEEEC------C-------CCEECCHHHHHHHHHHHHHHHHH-CCC-C-CCEEEEEHHHHCCCCCCE
T ss_conf 699999989999889988------9-------97184689999999999999745-689-9-843897466522799742
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCC-------CCCCCCCCCEEHHHHHHHH
Q ss_conf 64127654422566666653044022588762597-235211013556555676-------6563445100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLP-------VLPMSLGAGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~-------~~s~alG~~~vtpl~la~a 587 (817)
+...+..+.-.--++.++..|.|+.+..+++.+|. +.+..+++++|....... .....-+...+||.+|+..
T Consensus 78 ~~~~~~~~~~~~ll~~mi~~SdN~aa~~l~~~l~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~tTa~d~a~l 157 (258)
T 1ghp_A 78 EKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYDIELQYYSPKSKKDTSTPAAFGKT 157 (258)
T ss_dssp GGGTTEEEEHHHHHHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCBCCSCTTGGGCCCTTCCTTEECHHHHHHH
T ss_pred EECCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 32489822099999999861659999999998189378899999626143224776675568889985565489999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 22015744035446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817)
+..+.++ +.+++.....+.++|.........
T Consensus 158 l~~l~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 188 (258)
T 1ghp_A 158 LNKLIAN-------------------------------------------------GKLSKENKKFLLDLMLNNKSGDTL 188 (258)
T ss_dssp HHHHTTS-------------------------------------------------SSSCHHHHHHHHHHHHHCGGGTTT
T ss_pred HHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999748-------------------------------------------------864268899999998548214012
Q ss_pred -EHHCCCCCCEEEEECCCCCCCCEEEEEE------CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf -3210599604676046789702279845------69879999982668982789864421217999999999974
Q gi|254780752|r 668 -TGKVRLNRPVAGKTGTTSSYRDTWFIGY------TPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALK 736 (817)
Q Consensus 668 -~~a~~~~~~iaGKTGTt~~~~D~WfvG~------tp~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~ 736 (817)
......+..+++||||+.+.--...+|+ .+.|+++|..+.+.... ...-.+.+++.+.+++
T Consensus 189 ~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~~~vi~V~~~~~~~~~--------~~~~~li~~is~~~~~ 256 (258)
T 1ghp_A 189 IKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSD--------KPNDKLISETAKSVMK 256 (258)
T ss_dssp HHHHSCTTSEEEEEEEECSSTTCEEEEEEEECTTCCSCEEEEEEEECSSTTC--------CCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCH--------HHHHHHHHHHHHHHHH
T ss_conf 3434798875887774887765278999999899974899999917998686--------9999999999999997
No 25
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...
Probab=99.13 E-value=3.1e-10 Score=85.32 Aligned_cols=205 Identities=18% Similarity=0.168 Sum_probs=122.1
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 3116640656666117872132344433200123356653100001278874---02-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
+.+++++|..||+|++-..+ +.+++|+|++|.++..++|+ .| +.+++.+.=.+.....++..+
T Consensus 18 ~~~~~v~D~~tg~~l~~~n~------------d~~~~~AS~~Kl~~~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~- 84 (263)
T 1m40_A 18 RVGYIELDLNSGKILESFRP------------EERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVT- 84 (263)
T ss_dssp EEEEEEEETTTCCEEEEEST------------TSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTG-
T ss_pred EEEEEEEECCCCCEEEEECC------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCCCE-
T ss_conf 59999999999978777889------------98544578999999999999865277787747998420023799730-
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCC----C---CCCCCCCCEEHHHHHHHH
Q ss_conf 64127654422566666653044022588762597-235211013556555676----6---563445100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLP----V---LPMSLGAGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~----~---~s~alG~~~vtpl~la~a 587 (817)
....+..+.-.--++..+..|.|..+..|++.+|. +.+..+++++|+...... . ..-.-+....||.+|+..
T Consensus 85 ~~~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~~gg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ta~d~a~l 164 (263)
T 1m40_A 85 EKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMATT 164 (263)
T ss_dssp GGCTTTCEEHHHHHHHHHHSCCHHHHHHHHHHHTSHHHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHH
T ss_pred ECCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 12689816499999998862867999999998469348999999835466651688776668999987674089999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 22015744035446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817)
+..+.++ +.+++.....+.++|+........
T Consensus 165 l~~l~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 195 (263)
T 1m40_A 165 LRKLLTG-------------------------------------------------ELLTLASRQQLIDWMEADKVAGPL 195 (263)
T ss_dssp HHHHHHS-------------------------------------------------TTSCHHHHHHHHHHHHCCSSCTTT
T ss_pred HHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCEECCHH
T ss_conf 9999838-------------------------------------------------846888899999887448136000
Q ss_pred EHHC-CCCCCEEEEECCCCC--CCCEEEEEEC--CCEEEEEEEE
Q ss_conf 3210-599604676046789--7022798456--9879999982
Q gi|254780752|r 668 TGKV-RLNRPVAGKTGTTSS--YRDTWFIGYT--PTLVVGVYVG 706 (817)
Q Consensus 668 ~~a~-~~~~~iaGKTGTt~~--~~D~WfvG~t--p~~~~~vWvG 706 (817)
.+.. ..+..+++||||+.. ..|++.+... +.|+++|++.
T Consensus 196 ~~~~~p~~~~v~~KTG~~~~~~~~~~~iv~~~g~~~~ivvv~~~ 239 (263)
T 1m40_A 196 LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTT 239 (263)
T ss_dssp GGGGCCTTCEEEEEEEECSTTCEEEEEEEESTTCCCEEEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEECC
T ss_conf 01238999648883165778871499999919975999999817
No 26
>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis}
Probab=98.97 E-value=4.2e-09 Score=77.84 Aligned_cols=225 Identities=16% Similarity=0.105 Sum_probs=124.6
Q ss_pred CCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-C-CCCCCCCC--CCEEEEECCCCEE
Q ss_conf 531166406566661178721323444332001233566531000012788740-2-46654456--5237880378526
Q gi|254780752|r 439 VQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS-G-YTPASVIM--DAPIEVVSRGKIW 514 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~-G-~tp~t~~~--D~p~~~~~~~~~~ 514 (817)
.+.++.++|..||+++++-+ ....+|+|++|+++.+++|++ | ......+. .... ...++..+
T Consensus 14 ~~~gv~v~dl~tG~~~~~n~-------------~~~~~~AS~~Kl~~~~~~l~~~~~~~ld~~~~~~~~~~-~~~~~~~~ 79 (260)
T 3lez_A 14 VRLGVYAIDTGADKEISYRE-------------NERFAYTSTFKPLAVGAVLQTKSDEELEETITYSEEDL-VTYSPITE 79 (260)
T ss_dssp CEEEEEEEETTTTEEEEEST-------------TSEEECGGGGHHHHHHHHHHHCCHHHHHSEECCCGGGC-CSSCTTGG
T ss_pred CEEEEEEEECCCCCEEEECC-------------CCEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHC-CCCCCCCC
T ss_conf 86999999899998888889-------------97073488999999999998566688772699611011-47997401
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC-EEEEEECCCCCCCCCCC-----CCCCC--CCCCEEHHHHHHH
Q ss_conf 6641276544225666666530440225887625972-35211013556555676-----65634--4510000377674
Q gi|254780752|r 515 KPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMT-VVADYAENFGIYDKMLP-----VLPMS--LGAGETTVLRMVS 586 (817)
Q Consensus 515 ~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~-~~~~~~~~~Gi~~~~~~-----~~s~a--lG~~~vtpl~la~ 586 (817)
. ..+..+.-.--++..+..|-|+.+..|++.+|.. .+..+++++|....... ..+.. -+....||.+|+.
T Consensus 80 ~--~~g~~~t~~dll~~mi~~SdN~Aa~~L~~~~g~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~n~tTa~d~a~ 157 (260)
T 3lez_A 80 Q--HVDEGMTLVEIADAAIRYSDNTAGNLLLEAMGGPDELETILRDIGDETIEMDRYETELNEAKPGDIRDTSTAKAMAT 157 (260)
T ss_dssp G--CTTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTSHHHHHHHHHHTTCCSCBCCCCTTGGGCCCTTCCTTEEEHHHHHH
T ss_pred C--CCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 3--68983339999999886186799999999847944689999980513320345765455667898434407999999
Q ss_pred HHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32201574403544666764102443013358532355666666655455467554353589999999999999873480
Q gi|254780752|r 587 AYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT 666 (817)
Q Consensus 587 aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT 666 (817)
.+..+.++ +.+++.....+.++|........
T Consensus 158 ll~~l~~~-------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 188 (260)
T 3lez_A 158 TLQQYVLE-------------------------------------------------DVLDADRREVLTNMLINNTTGDA 188 (260)
T ss_dssp HHHHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCSSCTT
T ss_pred HHHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99999847-------------------------------------------------87888899999998744712543
Q ss_pred EEHHC-CCCCCEEEEECCCCCCCCEEEEEE--CC----CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43210-599604676046789702279845--69----879999982668982789864421217999999999
Q gi|254780752|r 667 ATGKV-RLNRPVAGKTGTTSSYRDTWFIGY--TP----TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKE 733 (817)
Q Consensus 667 g~~a~-~~~~~iaGKTGTt~~~~D~WfvG~--tp----~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~ 733 (817)
...+. ..+..+++||||+.... ...+|+ .| .|+++|+...+++. ...+....+.|-+.+++.
T Consensus 189 ~~~~~~~~~~~v~~KtG~~~~~~-~~dvgiv~~~~~~~~~iv~V~~~~~~~~----~~~~~~li~~is~~v~~~ 257 (260)
T 3lez_A 189 LIRAGVPDGWTVGDKTGAGGYGT-RNDIGIIWPEGDEEPIVIAIMSSRDEED----ADYDDKLIEKATEIVLQE 257 (260)
T ss_dssp TGGGGSCTTCEEEEEEEEETTTE-EEEEEEEECTTTCCCEEEEEEEECSSTT----CCCCTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEECCCCCCCCC-EEEEEEEEECCCCEEEEEEEECCCCCCC----HHHHHHHHHHHHHHHHHH
T ss_conf 43344788977896105678787-6899999978993599999981689878----487999999999999999
No 27
>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1
Probab=98.93 E-value=6.2e-09 Score=76.71 Aligned_cols=225 Identities=18% Similarity=0.186 Sum_probs=126.1
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 3116640656666117872132344433200123356653100001278874---02-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
..+++++|..||+++++- + ....+|.|++|.++..++|+ +| +.+++.+.-.+.....++..+.
T Consensus 17 ~~gv~v~dl~tG~~~~~n------------~-d~~~~~AS~~Kl~~a~~~l~~~~~g~~~l~~~v~~~~~~~~~~~~~~~ 83 (262)
T 2cc1_A 17 LIGLYAANLQSGRRITHR------------P-DEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALVPNSPVTE 83 (262)
T ss_dssp EEEEEEEETTTCCEEEES------------T-TSCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGCCSSCHHHH
T ss_pred EEEEEEEECCCCCEEEEC------------C-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCCEE
T ss_conf 699999999999888889------------9-984983899999999999997552899865389976423037997401
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCC----C---CCCCCCCEEHHHHHHHH
Q ss_conf 641276544225666666530440225887625-972352110135565556766----5---63445100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNM-GMTVVADYAENFGIYDKMLPV----L---PMSLGAGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~-G~~~~~~~~~~~Gi~~~~~~~----~---s~alG~~~vtpl~la~a 587 (817)
...+..+.-.--++..+..|.|..+.-|++.+ |.+.+..+++++|...-.... . ...-+....||.+|+..
T Consensus 84 -~~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~~~g~~~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~sTa~d~~~l 162 (262)
T 2cc1_A 84 -ARAGAEMTLAELCQAALQRSDNTAANLLLKTIGGPAAVTAFARSVGDERTRLDRWEVELNSAIPGDPRDTSTPAALAVG 162 (262)
T ss_dssp -TTTTSEEEHHHHHHHHHHSCCHHHHHHHHHHHTHHHHHHHHHHHTTCCSCCCCSCTTGGGGCCTTCCTTEECHHHHHHH
T ss_pred -CCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf -2689806399999999873447999999998499548899999644666125766555567889988776449999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 22015744035446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817)
+..+.++ +.+++..+..+.++|+...... -
T Consensus 163 ~~~l~~~-------------------------------------------------~~~~~~~~~~l~~~l~~~~~~~-~ 192 (262)
T 2cc1_A 163 YRAILAG-------------------------------------------------DALSPPQRGLLEDWMRANQTSS-M 192 (262)
T ss_dssp HHHHHHS-------------------------------------------------SSSCHHHHHHHHHHHHTCSCCS-G
T ss_pred HHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCCCCC-C
T ss_conf 9999758-------------------------------------------------8579899999999985273788-5
Q ss_pred EHHCCCCCCEEEEECCCCC--CCCEEEEEECC---CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3210599604676046789--70227984569---87999998266898278986442121799999999997
Q gi|254780752|r 668 TGKVRLNRPVAGKTGTTSS--YRDTWFIGYTP---TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEAL 735 (817)
Q Consensus 668 ~~a~~~~~~iaGKTGTt~~--~~D~WfvG~tp---~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~ 735 (817)
......+..++.|||++.. ..|+.++ +.| .|+++|..+.+.+... .....++..++-+.++
T Consensus 193 ~~~~~~~~~v~~KtG~~~~~~~~d~g~v-~~~~g~~~i~vv~~~~~~~~~~------~~~~~~li~~isr~v~ 258 (262)
T 2cc1_A 193 RAGLPEGWTTADKTGSGDYGSTNDAGIA-FGPDGQRLLLVMMTRSQAHDPK------AENLRPLIGELTALVL 258 (262)
T ss_dssp GGGSCTTCEEEEEEEECSTTCEEEEEEE-ECTTSCEEEEEEEEEESSSCTT------CCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEEE-ECCCCCEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHH
T ss_conf 4447888617888615488857899999-9289989999999689986605------8999999999999999
No 28
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* 3hre_A 3hlw_A 3huo_A* 3hvf_A* 1ylw_A 1ylp_A* ...
Probab=98.90 E-value=1.4e-08 Score=74.28 Aligned_cols=203 Identities=18% Similarity=0.106 Sum_probs=116.1
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECC-CCEE
Q ss_conf 3116640656666117872132344433200123356653100001278874---02-46654456523788037-8526
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSR-GKIW 514 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~-~~~~ 514 (817)
..+++++|-.||+++++-+ ...++|+|++|.++..+.|+ +| +.+++.+.=.+.....+ +..+
T Consensus 19 ~~~v~v~D~~tg~~~~~n~-------------d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~~~~~~~~~~~~~~~ 85 (263)
T 2p74_A 19 RLGVALIDTADNTQVLYRG-------------DERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAE 85 (263)
T ss_dssp EEEEEEEETTTTEEEEEST-------------TSCEECGGGGHHHHHHHHHHHHTTCTTGGGCEEECCGGGCCSCCTTGG
T ss_pred EEEEEEEECCCCCEEEECC-------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCCC
T ss_conf 6999999999998899889-------------970752789999999999998763899977469960666027998410
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCC-CCEEEEEECCCCCCCCCCC-------CCCCCCCCCEEHHHHHHH
Q ss_conf 66412765442256666665304402258876259-7235211013556555676-------656344510000377674
Q gi|254780752|r 515 KPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMG-MTVVADYAENFGIYDKMLP-------VLPMSLGAGETTVLRMVS 586 (817)
Q Consensus 515 ~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G-~~~~~~~~~~~Gi~~~~~~-------~~s~alG~~~vtpl~la~ 586 (817)
. ..+..+.-.-.+...+..|.|..+..|+..+| .+.+.++++++|+..-... ......+....||-+|+.
T Consensus 86 ~--~~g~~~~~~~ll~~mi~~SdN~Aa~~L~~~igg~~~~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~~~~T~~d~a~ 163 (263)
T 2p74_A 86 K--HVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRAMAQ 163 (263)
T ss_dssp G--GTTSEEEHHHHHHHHHHHCCHHHHHHHHHHTTSHHHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHH
T ss_pred C--CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 3--67984319999999987444799999999848841799999976963387378764456788997666336999999
Q ss_pred HHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32201574403544666764102443013358532355666666655455467554353589999999999999873480
Q gi|254780752|r 587 AYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT 666 (817)
Q Consensus 587 aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT 666 (817)
.+..+..+ +.+++.....+.++|........
T Consensus 164 ll~~l~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 194 (263)
T 2p74_A 164 TLRQLTLG-------------------------------------------------HALGETQRAQLVTWLKGNTTGAA 194 (263)
T ss_dssp HHHHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCSSCTT
T ss_pred HHHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99999838-------------------------------------------------87888999999999855866654
Q ss_pred E-EHHCCCCCCEEEEECCCCCC--CCEEEEEEC--CCEEEEEEEE
Q ss_conf 4-32105996046760467897--022798456--9879999982
Q gi|254780752|r 667 A-TGKVRLNRPVAGKTGTTSSY--RDTWFIGYT--PTLVVGVYVG 706 (817)
Q Consensus 667 g-~~a~~~~~~iaGKTGTt~~~--~D~WfvG~t--p~~~~~vWvG 706 (817)
. ......+..++.|||++... .|.=++... ..|+++|++-
T Consensus 195 ~~~~~~~~~~~v~~KTG~~~~~~~~dvgiv~~~g~~~~iv~v~~~ 239 (263)
T 2p74_A 195 SIRAGLPTSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFT 239 (263)
T ss_dssp TGGGGSCTTCEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEC
T ss_conf 323337888878884058678757899999969996899999947
No 29
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A
Probab=98.88 E-value=1.1e-08 Score=74.97 Aligned_cols=204 Identities=19% Similarity=0.211 Sum_probs=116.1
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 3116640656666117872132344433200123356653100001278874---02-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
+.+++++|..||+++++-+ ....+|+|++|.++.+++|+ +| +.+.+.+.-.+-....++. +.
T Consensus 22 ~~gv~v~D~~tG~~~~~n~-------------d~~~~~AS~~Kl~~~~a~l~~~~~g~l~~~~~~~~~~~~~~~~s~-~~ 87 (271)
T 1g6a_A 22 RIGVSVLDTQNGEYWDYNG-------------NQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSP-VI 87 (271)
T ss_dssp EEEEEEEETTTTEEEEEST-------------TSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCGGGCCSSCT-TG
T ss_pred EEEEEEEECCCCCEEEECC-------------CCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCC-CC
T ss_conf 2999999899998889899-------------974842899999999999999863998867527864899605998-40
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCC-----CCCCCCC--CCEEHHHHHHHH
Q ss_conf 64127654422566666653044022588762597-235211013556555676-----6563445--100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLP-----VLPMSLG--AGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~-----~~s~alG--~~~vtpl~la~a 587 (817)
....+..+.-.--+...+..|.|+.+..|.+.+|. +.+..+++++|+...... ..+...+ ....||-+|+..
T Consensus 88 ~~~~g~~~t~~~ll~~~l~~SdN~A~~~L~~~lg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l 167 (271)
T 1g6a_A 88 EKQVGQAITLDDACFATMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKAIAST 167 (271)
T ss_dssp GGCTTSEEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHH
T ss_pred CCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 12689724699999887744837999999998479548999999837443322677765557889973334069999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC-
Q ss_conf 2201574403544666764102443013358532355666666655455467554353589999999999999873480-
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT- 666 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT- 666 (817)
+..+..+- .+++.....+.+.|........
T Consensus 168 ~~~l~~~~-------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~ 198 (271)
T 1g6a_A 168 LNKFLFGS-------------------------------------------------ALSEMNQKKLESWMVNNQVTGNL 198 (271)
T ss_dssp HHHHHHSS-------------------------------------------------SSCHHHHHHHHHHHHTCSSCTTT
T ss_pred HHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99998377-------------------------------------------------43367899999998526106654
Q ss_pred EEHHCCCCCCEEEEECCCCC-CCCEEEEEECC---CEEEEEEEE
Q ss_conf 43210599604676046789-70227984569---879999982
Q gi|254780752|r 667 ATGKVRLNRPVAGKTGTTSS-YRDTWFIGYTP---TLVVGVYVG 706 (817)
Q Consensus 667 g~~a~~~~~~iaGKTGTt~~-~~D~WfvG~tp---~~~~~vWvG 706 (817)
.......+..++.|||+++. .+....+-+.| .|+++|.+.
T Consensus 199 ~~~~~p~~~~v~~KtG~~~~~~~~~~giv~~~~~~~yviaV~~~ 242 (271)
T 1g6a_A 199 LRSVLPAGWNIADKSGAGGFGARSITAVVWSEHQAPIIVSIYLA 242 (271)
T ss_dssp GGGGCCTTCEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEC
T ss_conf 43447888759998241588877899999968998899999936
No 30
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=98.83 E-value=1.4e-08 Score=74.43 Aligned_cols=182 Identities=15% Similarity=0.081 Sum_probs=107.4
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCC-CEEEEEE
Q ss_conf 311664065666611787213234443320012335665310000127887402466544565237880378-5266641
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRG-KIWKPEN 518 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~-~~~~p~N 518 (817)
..+++++|..||+++++-+ +.+++|.|++|.++.+++|++-- .. .+ |..+.+.... ..|.+..
T Consensus 59 ~~gv~~~D~~tG~~~~~n~-------------d~~~~~ASt~Kl~~a~~~l~~v~-~g-~l-d~~v~i~~~~~~~~~~~~ 122 (266)
T 1alq_A 59 HIGVYALDTKSGKEVKFNS-------------DKRFAYASTSKAINSAILLEQVP-YN-KL-NKKVHINKDDIVAYSPIL 122 (266)
T ss_dssp EEEEEEEETTTCCEEEEST-------------TSCEECGGGHHHHHHHHHHHSSC-GG-GT-TCEEEECGGGCCSSCTTG
T ss_pred EEEEEEEECCCCCEEEECC-------------CCCCCCHHHHHHHHHHHHHHHHH-CC-CC-CCEEEECHHHHHCCCCCC
T ss_conf 6999999999998888889-------------98353478999999999999720-47-87-751675388863369731
Q ss_pred CCCCCCCHHH----HHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCC-----CCCCC--CCCEEHHHHHHH
Q ss_conf 2765442256----6666653044022588762597-2352110135565556766-----56344--510000377674
Q gi|254780752|r 519 YSKNFSGAST----LRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLPV-----LPMSL--GAGETTVLRMVS 586 (817)
Q Consensus 519 ~~~~~~G~it----l~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~~-----~s~al--G~~~vtpl~la~ 586 (817)
. ......++ ++.++..|.|+.+..|++.+|. +.+..+++.+|...-.... ..... +....||.+|+.
T Consensus 123 ~-~~~g~~~tl~dll~~mi~~SdN~Aa~~L~~~lGg~~~~~~~~~~~G~~~t~l~~~~~~~~~~~~~~~~n~tTa~d~a~ 201 (266)
T 1alq_A 123 E-KYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGK 201 (266)
T ss_dssp G-GGTTEEEEHHHHHHHHHHHCCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHHHHH
T ss_pred C-CCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 0-468972359999998775487999999999977616899999974732276267776555677787444449999999
Q ss_pred HHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32201574403544666764102443013358532355666666655455467554353589999999999999873480
Q gi|254780752|r 587 AYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT 666 (817)
Q Consensus 587 aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT 666 (817)
.+..|..+. .+++.....+.++|........
T Consensus 202 ll~~l~~~~-------------------------------------------------~ls~~~~~~l~~~m~~~~~~~~ 232 (266)
T 1alq_A 202 TLNKLIANG-------------------------------------------------KLSKENKKFLLDLMLNNKSGDT 232 (266)
T ss_dssp HHHHHTTSS-------------------------------------------------SCCHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999998578-------------------------------------------------7899999999999963964430
Q ss_pred EEHHCC-CCCCEEEEECCCCCC
Q ss_conf 432105-996046760467897
Q gi|254780752|r 667 ATGKVR-LNRPVAGKTGTTSSY 687 (817)
Q Consensus 667 g~~a~~-~~~~iaGKTGTt~~~ 687 (817)
.-++.. .++.|++||||+..+
T Consensus 233 ~l~~~lP~~~~Va~KTGt~~~~ 254 (266)
T 1alq_A 233 LIKDGVPKDYKVADKSGQAITY 254 (266)
T ss_dssp THHHHSCTTCEEEEEEEECSST
T ss_pred HHHHCCCCCCEEEEEECCCCCC
T ss_conf 0554399998899965057767
No 31
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A* 2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A*
Probab=98.80 E-value=2.2e-08 Score=73.09 Aligned_cols=204 Identities=18% Similarity=0.130 Sum_probs=114.1
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEEC-CCCEE
Q ss_conf 31166406566661178721323444332001233566531000012788740---2-4665445652378803-78526
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVVS-RGKIW 514 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~~-~~~~~ 514 (817)
+.+++++|-.||++++-..+ +-.++|+|++|.++..++|++ | +.+++.+.-.+..... .+..+
T Consensus 18 ~vg~~v~D~~tG~~l~~~n~------------d~~~~~AS~~Kl~i~~~~l~~i~~g~l~~~~~i~~~~~~~~~~~~~~~ 85 (265)
T 1n9b_A 18 RVGMIEMDLASGRTLTAWRA------------DERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSE 85 (265)
T ss_dssp EEEEEEEETTTCCEEEEEST------------TSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEECCCGGGCCSCCTTGG
T ss_pred EEEEEEEECCCCCEEEEECC------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCC
T ss_conf 69999999999938667889------------985444889999999999998774898867179964677046897400
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCC-------CCCCCCCCCEEHHHHHHH
Q ss_conf 664127654422566666653044022588762597-235211013556555676-------656344510000377674
Q gi|254780752|r 515 KPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLP-------VLPMSLGAGETTVLRMVS 586 (817)
Q Consensus 515 ~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~-------~~s~alG~~~vtpl~la~ 586 (817)
. ..+..+.-.--+...+..|.|+.+-.|++.+|- +.+..+++++|+...... .....-+....||.+|+.
T Consensus 86 ~--~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~igg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ta~d~a~ 163 (265)
T 1n9b_A 86 K--HLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAA 163 (265)
T ss_dssp G--GTTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCCSCBCCCCTTGGGCCCTTCCTTEECHHHHHH
T ss_pred C--CCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 3--67972679999987360497469999999956855899999995247664167777556788996435437999999
Q ss_pred HHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32201574403544666764102443013358532355666666655455467554353589999999999999873480
Q gi|254780752|r 587 AYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT 666 (817)
Q Consensus 587 aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT 666 (817)
.+..+..+ +.+++.....+.++|........
T Consensus 164 ll~~l~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 194 (265)
T 1n9b_A 164 TLRKLLTS-------------------------------------------------QRLSARSQRQLLQWMVDDRVAGP 194 (265)
T ss_dssp HHHHHHHS-------------------------------------------------SSSCHHHHHHHHHHHHTCSSSHH
T ss_pred HHHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCEECCC
T ss_conf 99999747-------------------------------------------------75458899999998745753400
Q ss_pred EEH-HCCCCCCEEEEECCCCC-C-CCEEEEEEC--CCEEEEEEEE
Q ss_conf 432-10599604676046789-7-022798456--9879999982
Q gi|254780752|r 667 ATG-KVRLNRPVAGKTGTTSS-Y-RDTWFIGYT--PTLVVGVYVG 706 (817)
Q Consensus 667 g~~-a~~~~~~iaGKTGTt~~-~-~D~WfvG~t--p~~~~~vWvG 706 (817)
..+ ....+..++.|||++.. . .|..++... ..|+++|.+.
T Consensus 195 ~~~~~~~~~~~v~~KTG~~~~~~~~dv~iv~~~~~~~~iv~v~~~ 239 (265)
T 1n9b_A 195 LIRSVLPAGWFIADKTGASERGARGIVALLGPNNKAERIVVIYLR 239 (265)
T ss_dssp HHHTTSCTTCEEEEEEEEETTTEEEEEEEEESTTCCCEEEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEC
T ss_conf 001238888768997442788880289999979995899999947
No 32
>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae}
Probab=98.78 E-value=1.7e-08 Score=73.88 Aligned_cols=201 Identities=22% Similarity=0.180 Sum_probs=118.5
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 3116640656666117872132344433200123356653100001278874---02-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
..++.++|..||++++.- + ...++|.|++|.++..++|+ +| +.+++.+.-.+..... |.
T Consensus 38 ~~gv~v~d~~tg~~~~~n------------~-d~~f~~AS~~Kl~~~~~~l~~v~~g~l~~~~~v~~~~~~~~~----~~ 100 (287)
T 2qpn_A 38 QIGVAIVDPQGEIVAGHR------------M-AQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVE----WS 100 (287)
T ss_dssp EEEEEEECTTCCEEEEES------------T-TSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCGGGCCS----SC
T ss_pred EEEEEEEECCCCCEEEEC------------C-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHC----CC
T ss_conf 699999989999489876------------9-974254589999999999998763887766157505888525----79
Q ss_pred EEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCC-----CCCCC--CCCEEHHHH
Q ss_conf 6412765442256666----6653044022588762597-2352110135565556766-----56344--510000377
Q gi|254780752|r 516 PENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLPV-----LPMSL--GAGETTVLR 583 (817)
Q Consensus 516 p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~~-----~s~al--G~~~vtpl~ 583 (817)
+........+.+++++ .+..|-|+.+..|++.+|. +.+..+++++|+....... .+... .....||-+
T Consensus 101 ~~~~~~~~~~~~tl~~Ll~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~tta~d 180 (287)
T 2qpn_A 101 PATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEPEMGDNTPGDLRDTTTPIA 180 (287)
T ss_dssp HHHHHHTTTTEEEHHHHHHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHH
T ss_pred CCEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 75034258978789999999999552699999999948955789999982634331367776556678898656407999
Q ss_pred HHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
Q ss_conf 67432201574403544666764102443013358532355666666655455467554353589999999999999873
Q gi|254780752|r 584 MVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK 663 (817)
Q Consensus 584 la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~ 663 (817)
|+..+..+.++- .+++.....+.++|.....
T Consensus 181 ~~~ll~~l~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~ 211 (287)
T 2qpn_A 181 MARTVAKVLYGG-------------------------------------------------ALTSTSTHTIERWLIGNQT 211 (287)
T ss_dssp HHHHHHHHHTSS-------------------------------------------------SSCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCEE
T ss_conf 999999987443-------------------------------------------------3478999999999736835
Q ss_pred CCCE-EHHCCCCCCEEEEECCCCCCCCEEEEEE--CC--CEEEEEEEEC
Q ss_conf 4804-3210599604676046789702279845--69--8799999826
Q gi|254780752|r 664 HGTA-TGKVRLNRPVAGKTGTTSSYRDTWFIGY--TP--TLVVGVYVGY 707 (817)
Q Consensus 664 ~GTg-~~a~~~~~~iaGKTGTt~~~~D~WfvG~--tp--~~~~~vWvG~ 707 (817)
.... ......+..++.||||+.... ..++|+ .+ .|+++|+...
T Consensus 212 ~~~~l~~~~p~~~~v~~KTG~~~~~~-~~dvgiv~~~~~~~ii~Vl~~~ 259 (287)
T 2qpn_A 212 GDATLRAGFPKDWVVGEKTGTCANGG-RNDIGFFKAQERDYAVAVYTTA 259 (287)
T ss_dssp CTTSGGGGSCTTSEEEEEEEEETTTE-EEEEEEEEETTEEEEEEEEEEC
T ss_pred CHHHHHCCCCCCCEEEEEECCCCCCC-EEEEEEEEECCEEEEEEEEECC
T ss_conf 22234304898976899605367865-5999999989956999999259
No 33
>3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp}
Probab=98.74 E-value=1.2e-07 Score=68.08 Aligned_cols=204 Identities=14% Similarity=0.087 Sum_probs=115.4
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEE-CCCCEEE
Q ss_conf 116640656666117872132344433200123356653100001278874---02-466544565237880-3785266
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVV-SRGKIWK 515 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~-~~~~~~~ 515 (817)
-++.++|..||+++++- . +...+|.|++|.++..++|+ .| +.+++.+.-.+.... .++....
T Consensus 39 ~gv~~~Dl~tG~~~~~n------~-------d~~~p~AS~~Kl~~~~~~l~~i~~g~~~l~~~v~i~~~~~~~~~~~~~~ 105 (290)
T 3p09_A 39 IGIYTLNTDDKTNIKYN------E-------SYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPIT 105 (290)
T ss_dssp EEEEEECC----CCEES------T-------TSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEEECCHHHHTTCCCCTTG
T ss_pred EEEEEEECCCCCEEEEC------C-------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCE
T ss_conf 99999989999889888------9-------9750426799999999999986548977665168529995136887543
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCC----CC-CCCCC--CCEEHHHHHHHH
Q ss_conf 64127654422566666653044022588762597-235211013556555676----65-63445--100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLP----VL-PMSLG--AGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~----~~-s~alG--~~~vtpl~la~a 587 (817)
.-..+.+.-.-.+..++..|.|..+..++..+|. +.+.++++++|....... .+ ....+ ....||-+|+..
T Consensus 106 -~~~~~~~~~~~~l~~~~~~SdN~aa~~L~~~~gg~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~n~tTa~dla~l 184 (290)
T 3p09_A 106 -AKNVGKTLTISQLNYAAILSDSPASNILVRELGGLQNLNKFIKKLGDNDTIITADEPEINYTQPHSNINKTTPKAITKD 184 (290)
T ss_dssp -GGCTTSEEEHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCCSCBCCCCTTGGGCCCTTBCTTEECHHHHHHH
T ss_pred -EECCCCEEHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf -4348836569999750446782999999999638548999999839723212677632235789975563489999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 22015744035446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817)
+..+.++- .+++.....+.+.|.........
T Consensus 185 l~~l~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (290)
T 3p09_A 185 IYKLAFGN-------------------------------------------------ILDKKHKDIFIKYLQDNNTGANR 215 (290)
T ss_dssp HHHHHHSS-------------------------------------------------SSCHHHHHHHHHHHHHCCTTTTT
T ss_pred HHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99997189-------------------------------------------------88989999999998438513221
Q ss_pred -EHHCCCCCCEEEEECCCCCCCCEEEEE--ECC---CEEEEEEEEC
Q ss_conf -321059960467604678970227984--569---8799999826
Q gi|254780752|r 668 -TGKVRLNRPVAGKTGTTSSYRDTWFIG--YTP---TLVVGVYVGY 707 (817)
Q Consensus 668 -~~a~~~~~~iaGKTGTt~~~~D~WfvG--~tp---~~~~~vWvG~ 707 (817)
......+..++.|||++....-.=.+| +.| .|+++|.+..
T Consensus 216 ~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~g~~yii~V~~~~ 261 (290)
T 3p09_A 216 IAFSMPKDWIIGDKTGTCGQYAATNDVAIIWPKNQQPIALGILYTN 261 (290)
T ss_dssp GGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEEC
T ss_pred HHCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCC
T ss_conf 1014898877996035656787578999998289987999999068
No 34
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Probab=98.66 E-value=2.3e-07 Score=66.24 Aligned_cols=204 Identities=17% Similarity=0.143 Sum_probs=115.3
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 3116640656666117872132344433200123356653100001278874---02-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
+-++.++|..||+++++-+ .-.++|+|++|.++..++|+ .| +.+.+.+.-.+-....++....
T Consensus 20 ~~gv~v~d~~tg~~~~~n~-------------d~~~~~AS~~Kl~~~~~~l~~i~~g~~~l~~~i~~~~~~~~~~~~~~~ 86 (271)
T 1hzo_A 20 RLGVALINTEDNSQITYRG-------------EERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITE 86 (271)
T ss_dssp EEEEEEEETTTTEEEEEST-------------TSCEECGGGGHHHHHHHHHHHHHHSTTGGGCEECCCGGGCCSCCTTGG
T ss_pred EEEEEEEECCCCCEEEECC-------------CCEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCC
T ss_conf 6999999899999899889-------------970723889999999999997453898878559975999625787533
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCC-----CCCCCC--CCEEHHHHHHHH
Q ss_conf 6412765442256666665304402258876259-72352110135565556766-----563445--100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMG-MTVVADYAENFGIYDKMLPV-----LPMSLG--AGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G-~~~~~~~~~~~Gi~~~~~~~-----~s~alG--~~~vtpl~la~a 587 (817)
...+..+.=.--+...+..|.|+++..|++.+| .+.+..+++++|+....... .....+ ..-.||-+|+..
T Consensus 87 -~~~g~~~s~~~ll~~mi~~SdN~Aa~~L~~~~gg~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~tTa~d~a~l 165 (271)
T 1hzo_A 87 -KHLTTGMTLAELSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTTSPIAMAKS 165 (271)
T ss_dssp -GCTTTCEEHHHHHHHHHHTCCHHHHHHHHHHHTSHHHHHHHHHHTTCSSCCCCCCTTGGGCCCTTCCTTEECHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf -4689851099999999985444999999998369078999999936343314677654556789987674389999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 22015744035446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817)
...+.++ +.+++.....+.++|.........
T Consensus 166 l~~l~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 196 (271)
T 1hzo_A 166 LQALTLG-------------------------------------------------DALGQSQRQQLVTWLKGNTTGDNS 196 (271)
T ss_dssp HHHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCSSCTTT
T ss_pred HHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCEECCCC
T ss_conf 9999738-------------------------------------------------865667899999998277636633
Q ss_pred EHH-CCCCCCEEEEECCCCC--CCCEEEEEEC--CCEEEEEEEE
Q ss_conf 321-0599604676046789--7022798456--9879999982
Q gi|254780752|r 668 TGK-VRLNRPVAGKTGTTSS--YRDTWFIGYT--PTLVVGVYVG 706 (817)
Q Consensus 668 ~~a-~~~~~~iaGKTGTt~~--~~D~WfvG~t--p~~~~~vWvG 706 (817)
.+. ...+..++.|||++.. ..|++++..- ..|+++|...
T Consensus 197 ~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~yiv~v~~~ 240 (271)
T 1hzo_A 197 IKAGLPKHWVVGDKTGSGDYGTTNDIAVIWPENHAPLILVVYFT 240 (271)
T ss_dssp GGGGSCTTSEEEEEEEEETTTEEEEEEEEECTTSCCEEEEEEEE
T ss_pred CCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEEEEC
T ss_conf 33457861599998278777747999999938999899999957
No 35
>1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A
Probab=98.66 E-value=3.1e-07 Score=65.43 Aligned_cols=204 Identities=17% Similarity=0.138 Sum_probs=113.0
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 31166406566661178721323444332001233566531000012788740---2-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
+-+++++|-.||+++++- . ...++|.|++|.++..++|++ | +.+++.+.=.+-....++. +.
T Consensus 18 ~~gv~v~Dl~tg~~~~~n------~-------d~~~~~AS~~Kl~~a~~~l~~i~~g~l~~~~~v~~~~~~~~~~~~-~~ 83 (265)
T 1bue_A 18 RIGVYALDTGSGKSFSYR------A-------NERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSP-IT 83 (265)
T ss_dssp EEEEEEEETTTCCEEEES------T-------TSCEECGGGGHHHHHHHHHHHHHTTSSCTTCEECCTTSCCCSSCH-HH
T ss_pred EEEEEEEECCCCCEEEEC------C-------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCCC-CE
T ss_conf 799999999999888889------9-------985873899999999999998761898866538975766037997-31
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCC--CCEEEEEECCCCCCCCCCC----CCCCC--CC-CCEEHHHHHHH
Q ss_conf 6412765442256666665304402258876259--7235211013556555676----65634--45-10000377674
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMG--MTVVADYAENFGIYDKMLP----VLPMS--LG-AGETTVLRMVS 586 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G--~~~~~~~~~~~Gi~~~~~~----~~s~a--lG-~~~vtpl~la~ 586 (817)
....+..+.-.--+...+..|.|..+.-++..+| .+.+..+++++|....... ...-. .+ ....||.+|+.
T Consensus 84 ~~~~g~~~t~~~ll~~mi~~SdN~Aa~~l~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~a~ 163 (265)
T 1bue_A 84 TKYKDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAAVAK 163 (265)
T ss_dssp HHTTTTCEEHHHHHHHHHHSCCHHHHHHHHHHTTCHHHHHHHHHHHTTCSSCBCCSCTTGGGCCCTTCCTTEECHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 22689711399999999985667999999998448567999999985144321246645455898998655206999999
Q ss_pred HHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
Q ss_conf 32201574403544666764102443013358532355666666655455467554353589999999999999873480
Q gi|254780752|r 587 AYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT 666 (817)
Q Consensus 587 aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT 666 (817)
.+..+.++- .+++.....+.++|...-....
T Consensus 164 ll~~l~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 194 (265)
T 1bue_A 164 SLKTLALGN-------------------------------------------------ILSEHEKETYQTWLKGNTTGAA 194 (265)
T ss_dssp HHHHHHHSS-------------------------------------------------SSCHHHHHHHHHHHHTCSSCTT
T ss_pred HHHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999998478-------------------------------------------------6788899999999834755655
Q ss_pred -EEHHCCCCCCEEEEECCCCCCCCEEEEEE--CC---CEEEEEEEE
Q ss_conf -43210599604676046789702279845--69---879999982
Q gi|254780752|r 667 -ATGKVRLNRPVAGKTGTTSSYRDTWFIGY--TP---TLVVGVYVG 706 (817)
Q Consensus 667 -g~~a~~~~~~iaGKTGTt~~~~D~WfvG~--tp---~~~~~vWvG 706 (817)
-......+..++.|||++...--.+.+|+ +| .|+++|.+.
T Consensus 195 ~~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiiaV~~~ 240 (265)
T 1bue_A 195 RIRASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTT 240 (265)
T ss_dssp TGGGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEEC
T ss_conf 3223478887689975577777736899999859998899999946
No 36
>1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A
Probab=98.63 E-value=6.3e-08 Score=70.01 Aligned_cols=203 Identities=17% Similarity=0.120 Sum_probs=115.9
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 31166406566661178721323444332001233566531000012788740---2-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
+.++.++|-.||+++++-+ ...+++.|++|.++..++|+. | +.+.+.+.-.+.....++....
T Consensus 30 ~~gv~~~D~~tg~~~~~n~-------------d~~~~~AS~~Kl~~~~~~l~~v~~g~l~l~~~v~~~~~~~~~~~~~~~ 96 (276)
T 1o7e_A 30 RLGVTLLDTASGRRIGHRQ-------------DERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPVTR 96 (276)
T ss_dssp EEEEEEEETTTCCEEEEST-------------TSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEEECGGGCCSSCTTGG
T ss_pred EEEEEEEECCCCCEEEECC-------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHCCCCCCCC
T ss_conf 6999999899998877779-------------975243499999999999998864896756331104756036897421
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCC-------CCCCCCCCCEEHHHHHHHH
Q ss_conf 64127654422566666653044022588762597-235211013556555676-------6563445100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLP-------VLPMSLGAGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~-------~~s~alG~~~vtpl~la~a 587 (817)
...+..+.-.-.++..+..|.|+.+..|++.+|. +.+..+++++|....... ......+....||.+|+..
T Consensus 97 -~~~g~~~t~~~ll~~mi~~SdN~Aa~~l~~~lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tt~~~~a~l 175 (276)
T 1o7e_A 97 -RHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEPELNSFAKGDPRDTTTPAAMAAT 175 (276)
T ss_dssp -GGTTEEEEHHHHHHHHHHSCCHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCCCCCTTGGGCCBTTBCTTEECHHHHHHH
T ss_pred -CCCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf -3688831099999999985648999999999559168999999826401123454442347889997784849999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf 22015744035446667641024430133585323556666666554554675543535899999999999998734804
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTA 667 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg 667 (817)
+..+.++- .+++.....+.++|.........
T Consensus 176 l~~l~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 206 (276)
T 1o7e_A 176 LQRVVLGE-------------------------------------------------VLQPASRQQLADWLIDNETGDAC 206 (276)
T ss_dssp HHHHHTSS-------------------------------------------------SSCHHHHHHHHHHHHTCSSCTTT
T ss_pred HHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99998388-------------------------------------------------67878999999998568326542
Q ss_pred EHH-CCCCCCEEEEECCCCCCCCEEEEEE--C----CCEEEEEEEE
Q ss_conf 321-0599604676046789702279845--6----9879999982
Q gi|254780752|r 668 TGK-VRLNRPVAGKTGTTSSYRDTWFIGY--T----PTLVVGVYVG 706 (817)
Q Consensus 668 ~~a-~~~~~~iaGKTGTt~~~~D~WfvG~--t----p~~~~~vWvG 706 (817)
.+. ...+..++.||||..... .=.+|+ . ..|+++|++.
T Consensus 207 ~~~~~p~~~~v~~KtG~~~~~~-~~d~giv~~~~~g~~~iiaV~~~ 251 (276)
T 1o7e_A 207 LRAGLGKRWRVGDKTGSNGEDA-RNDIAVLWPVAGGAPWVLTAYLQ 251 (276)
T ss_dssp HHHHSCTTEEEEEEEEECSSSE-EEEEEEEEETTSSCCEEEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCCC-EEEEEEEEECCCCCEEEEEEEEC
T ss_conf 2245787765767614257786-35699999658996799999947
No 37
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A
Probab=98.63 E-value=1.7e-07 Score=67.18 Aligned_cols=200 Identities=16% Similarity=0.078 Sum_probs=112.6
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCCCCCCEEEEEC-----CCC
Q ss_conf 311664065666611787213234443320012335665310000127887402--4665445652378803-----785
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG--YTPASVIMDAPIEVVS-----RGK 512 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G--~tp~t~~~D~p~~~~~-----~~~ 512 (817)
.-+++++|..||+++++- + ..+++|.|++|.++..++|++. ..+.. .+.+.. .+.
T Consensus 18 ~~gv~v~D~~tG~~~~~n------------~-d~~~~~AS~~Kl~~~~~~l~~~~~~~ld~-----~~~~~~~~~~~~~~ 79 (265)
T 2wk0_A 18 KLGIFALDTGTNRTVTYR------------P-DERFAFASTIKALTVGVLLQQKSIEDLNQ-----RITYTRDDLVNYNP 79 (265)
T ss_dssp EEEEEEEETTTCCEEEES------------T-TCEEECGGGHHHHHHHHHHHHCCTGGGGC-----EECCCTTTCCSCCT
T ss_pred EEEEEEEECCCCCEEEEC------------C-CCEECCHHHHHHHHHHHHHHHCCCCCCCC-----EEEEEHHHHCCCCC
T ss_conf 699999989999888988------------9-96472388999999999999668777574-----69975665316887
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCC-------CCCCCCCEEHHHHH
Q ss_conf 266641276544225666666530440225887625972-3521101355655567665-------63445100003776
Q gi|254780752|r 513 IWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMT-VVADYAENFGIYDKMLPVL-------PMSLGAGETTVLRM 584 (817)
Q Consensus 513 ~~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~-~~~~~~~~~Gi~~~~~~~~-------s~alG~~~vtpl~l 584 (817)
.+ ....+..+.-.--++..+..|.|..+..|+..+|.. .+..+++++|...-..... ...-+....|+.+|
T Consensus 80 ~~-~~~~g~~~t~~~l~~~mi~~SdN~Aa~~L~~~igg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 158 (265)
T 2wk0_A 80 IT-EKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARAL 158 (265)
T ss_dssp TG-GGCTTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEEEHHHH
T ss_pred CC-CCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 42-34689833399999999986356999999998543316999999620445101345565567889974444579999
Q ss_pred HHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHC
Q ss_conf 74322015744035446667641024430133585323556666666554554675543535899999999999998734
Q gi|254780752|r 585 VSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKH 664 (817)
Q Consensus 585 a~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~ 664 (817)
+..+..+.++- ..++.....+.++|......
T Consensus 159 ~~~l~~l~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 189 (265)
T 2wk0_A 159 ATSLQAFALED-------------------------------------------------KLPSEKRELLIDWMKRNTTG 189 (265)
T ss_dssp HHHHHHHHTST-------------------------------------------------TSCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCC-------------------------------------------------CCCHHHHHHHHHHHHCCCCC
T ss_conf 99999996076-------------------------------------------------56888999999998537557
Q ss_pred CCEEHH-CCCCCCEEEEECCCCCCCCEEEEEE--CC---CEEEEEEEECC
Q ss_conf 804321-0599604676046789702279845--69---87999998266
Q gi|254780752|r 665 GTATGK-VRLNRPVAGKTGTTSSYRDTWFIGY--TP---TLVVGVYVGYD 708 (817)
Q Consensus 665 GTg~~a-~~~~~~iaGKTGTt~~~~D~WfvG~--tp---~~~~~vWvG~D 708 (817)
.....+ ...+..++.|||++.... ..++|+ .| .|+++|+...+
T Consensus 190 ~~~~~~~~~~~~~v~~KtG~~~~~~-~~~~giv~~~~g~~yiiaVl~~~~ 238 (265)
T 2wk0_A 190 DALIRAGVPEGWEVADKTGAGSYGT-RNDIAIIWPPKGDPVVLAVLSSRD 238 (265)
T ss_dssp TTTGGGGSCTTCEEEEEEEEETTTE-EEEEEEEECSSSCCEEEEEEEECS
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCC-EEEEEEEECCCCCEEEEEEECCCC
T ss_conf 4321245788866999461458770-789999992899889999990799
No 38
>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli}
Probab=98.63 E-value=3.3e-07 Score=65.22 Aligned_cols=226 Identities=18% Similarity=0.144 Sum_probs=121.9
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEEE
Q ss_conf 116640656666117872132344433200123356653100001278874---02-46654456523788037852666
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWKP 516 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~p 516 (817)
.++.++|..||+++++=+ ...++|.|++|.++...+|+ +| +.+++.+.-.+.....++... .
T Consensus 44 ~gv~v~Dl~tG~~~~~n~-------------d~~~~~ASt~Kl~~~~~~l~~i~~g~l~l~~~v~i~~~~~~~~s~~~-~ 109 (294)
T 3dw0_A 44 IGVYAMDTGSGATVSYRA-------------EERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPIS-E 109 (294)
T ss_dssp EEEEEEETTTCCEEEEST-------------TSCEECGGGHHHHHHHHHHHHHTTSTTCTTCEECCCGGGCCSSCHHH-H
T ss_pred EEEEEEECCCCCEEEECC-------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCCCCCCC-C
T ss_conf 999999899998867889-------------97342255999999999999886499887836996478703799721-0
Q ss_pred EECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC-EEEEEECCCCCCCCCCC----CCC---CCCCCCEEHHHHHHHHH
Q ss_conf 41276544225666666530440225887625972-35211013556555676----656---34451000037767432
Q gi|254780752|r 517 ENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMT-VVADYAENFGIYDKMLP----VLP---MSLGAGETTVLRMVSAY 588 (817)
Q Consensus 517 ~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~-~~~~~~~~~Gi~~~~~~----~~s---~alG~~~vtpl~la~ay 588 (817)
...+..+.-.--++..+..|.|..+..|.+.+|.. .+..+++++|+...... ... ..-+....||.+|+..+
T Consensus 110 ~~~g~~~tv~dLl~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~t~~d~a~~l 189 (294)
T 3dw0_A 110 KYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESL 189 (294)
T ss_dssp HTTTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 35788667999999999737599999999986775169999998073332047887644588998754515599999999
Q ss_pred HHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC-E
Q ss_conf 201574403544666764102443013358532355666666655455467554353589999999999999873480-4
Q gi|254780752|r 589 AVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT-A 667 (817)
Q Consensus 589 a~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT-g 667 (817)
..+..+ +.+++.....+.+.|......-. -
T Consensus 190 ~~l~~~-------------------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (294)
T 3dw0_A 190 QKLTLG-------------------------------------------------SALAAPQRQQFVDWLKGNTTGNHRI 220 (294)
T ss_dssp HHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCSSCTTTG
T ss_pred HHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 999838-------------------------------------------------7534678999999872575477511
Q ss_pred EHHCCCCCCEEEEECCCCCCCCEEEEE--ECC---CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 321059960467604678970227984--569---8799999826689827898644212179999999999748
Q gi|254780752|r 668 TGKVRLNRPVAGKTGTTSSYRDTWFIG--YTP---TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALKN 737 (817)
Q Consensus 668 ~~a~~~~~~iaGKTGTt~~~~D~WfvG--~tp---~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~~~~~ 737 (817)
......+..++.|||++...--.=.+| +.| .|+++|.+....+ .....-.+..++-+.+++.
T Consensus 221 ~~~~~~~~~v~~KtG~~~~~g~~~dvgiv~~~~~~~~iiaV~~~~~~~--------~~~~~~~li~~iar~v~~~ 287 (294)
T 3dw0_A 221 RAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNK--------DDKHSEAVIAAAARLALEG 287 (294)
T ss_dssp GGGSCTTSEEEEEEEECSSTTCEEEEEEEECTTSCCEEEEEEEECSST--------TCCCCHHHHHHHHHHHHHH
T ss_pred HCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC--------CHHHHHHHHHHHHHHHHHH
T ss_conf 014889978998731367876488999999389987999999179999--------9899999999999999999
No 39
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Probab=98.62 E-value=3.6e-07 Score=64.99 Aligned_cols=205 Identities=18% Similarity=0.133 Sum_probs=113.5
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 31166406566661178721323444332001233566531000012788740---2-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
+-++.++|..||+++++-+ +..++|.|++|.++..++|+. | +.+++.+.=.+-....+.....
T Consensus 18 ~vgv~v~Dl~tG~~~~~n~-------------d~~~~~AS~~Kl~~a~~~l~~~~~g~~~~~~~v~~~~~~~~~~~~~~~ 84 (264)
T 3c5a_A 18 SIGVYAMDTGSGATVSYRA-------------EERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPISE 84 (264)
T ss_dssp EEEEEEEETTTCCEEEEST-------------TSCEECGGGHHHHHHHHHHHHHHHSTTSTTCEECCCGGGCCSSCHHHH
T ss_pred EEEEEEEECCCCCEEEECC-------------CCEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHCCCCCCCCC
T ss_conf 7999999899998889889-------------975842889999999999985153068856517842766147998411
Q ss_pred EEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCE-EEEEECCCCCCCCCCC------CC-CCCCCCCEEHHHHHHHH
Q ss_conf 6412765442256666665304402258876259723-5211013556555676------65-63445100003776743
Q gi|254780752|r 516 PENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTV-VADYAENFGIYDKMLP------VL-PMSLGAGETTVLRMVSA 587 (817)
Q Consensus 516 p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~-~~~~~~~~Gi~~~~~~------~~-s~alG~~~vtpl~la~a 587 (817)
...+..+.=.--+...+..|-|+.+..|+..+|... ...+++++|+...... .. ...-+..-.|+.+|+..
T Consensus 85 -~~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~ig~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~tta~d~~~l 163 (264)
T 3c5a_A 85 -KYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTES 163 (264)
T ss_dssp -HTTTTCEEHHHHHHHHHHSCCHHHHHHHHHHTTHHHHHHHHHHHTTCSSCBCCCCTTGGGCCCTTCCTTEECHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf -0578871899999764506938999999999579606799999801422035677775568888865451359999999
Q ss_pred HHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC-
Q ss_conf 2201574403544666764102443013358532355666666655455467554353589999999999999873480-
Q gi|254780752|r 588 YAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGT- 666 (817)
Q Consensus 588 ya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GT- 666 (817)
...+.++ +.+++.....+.+.|......-.
T Consensus 164 l~~l~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 194 (264)
T 3c5a_A 164 LQKLTLG-------------------------------------------------SALAAPQRQQFVDWLKGNTTGNHR 194 (264)
T ss_dssp HHHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCSSCTTT
T ss_pred HHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999748-------------------------------------------------767999999999997357105554
Q ss_pred EEHHCCCCCCEEEEECCCCCCCCEEEEEE--CC---CEEEEEEEEC
Q ss_conf 43210599604676046789702279845--69---8799999826
Q gi|254780752|r 667 ATGKVRLNRPVAGKTGTTSSYRDTWFIGY--TP---TLVVGVYVGY 707 (817)
Q Consensus 667 g~~a~~~~~~iaGKTGTt~~~~D~WfvG~--tp---~~~~~vWvG~ 707 (817)
-......+..++.|||++...--.+++|+ .| .|+++|.+..
T Consensus 195 ~~~~~~~~~~v~~KtG~~~~~g~~~d~giv~~~~~~~yiivV~~~~ 240 (264)
T 3c5a_A 195 IRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRA 240 (264)
T ss_dssp GGGGSCTTSEEEEEEEECCGGGCEEEEEEEECTTSCCEEEEEEEEC
T ss_pred CCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEEECC
T ss_conf 4544788866899872558887478999998089978999999369
No 40
>3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic resistance, cell membrane, hydrolase, lipoprotein, membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis} PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A
Probab=98.58 E-value=1.8e-07 Score=66.97 Aligned_cols=200 Identities=18% Similarity=0.113 Sum_probs=110.8
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEC-----CCCEE
Q ss_conf 3116640656666117872132344433200123356653100001278874024665445652378803-----78526
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVS-----RGKIW 514 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~-----~~~~~ 514 (817)
+-++.++|..||++++.-+ ..+++|.|++|.++..++|++.- ... + |..+.+.. ++..
T Consensus 16 ~~~v~~~D~~tG~~~~~n~-------------d~~~~~AS~~Kl~~a~~~l~~~~-~g~-l-d~~v~~~~~~~~~~~~~- 78 (265)
T 3m6b_A 16 RLGVYVPATGTTAAIEYRA-------------DERFAFCSTFKAPLVAAVLHQNP-LTH-L-DKLITYTSDDIRSISPV- 78 (265)
T ss_dssp EEEEEECCCSSCCCEEEST-------------TSCEECGGGGHHHHHHHHHHHSC-GGG-G-GCEECCCGGGCCSCCTT-
T ss_pred EEEEEEEECCCCCEEEECC-------------CCEECCHHHHHHHHHHHHHHHCC-CCC-C-CCEEEECHHHHHCCCCC-
T ss_conf 6999999999998899899-------------97388389999999999998577-678-8-84278549995068985-
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-----CEEEEEECCCCCCCCCCCCC-------CCCCCCCEEHHH
Q ss_conf 664127654422566666653044022588762597-----23521101355655567665-------634451000037
Q gi|254780752|r 515 KPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-----TVVADYAENFGIYDKMLPVL-------PMSLGAGETTVL 582 (817)
Q Consensus 515 ~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-----~~~~~~~~~~Gi~~~~~~~~-------s~alG~~~vtpl 582 (817)
.....+..+.=.--+...+..|.|..+..|++.+|- +.+-.+++++|...-..... ...-+....|+.
T Consensus 79 ~~~~~g~~~tv~~ll~~mi~~SdN~Aa~~L~~~~Gg~~~~~~~~n~~~~~lG~~~t~~~~~~~~~~~~~~~~~~~~~t~~ 158 (265)
T 3m6b_A 79 AQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPH 158 (265)
T ss_dssp GGGCTTTCEEHHHHHHHHHHSCCHHHHHHHHHHHCSTGGGHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHH
T ss_pred CCCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 20258885149999999998433899999999968968899999999997598643613677665544567641022599
Q ss_pred HHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHH
Q ss_conf 76743220157440354466676410244301335853235566666665545546755435358999999999999987
Q gi|254780752|r 583 RMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVI 662 (817)
Q Consensus 583 ~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv 662 (817)
+|+..+..+.++ +.+++.....+.++|....
T Consensus 159 ~~a~~l~~l~~~-------------------------------------------------~~~~~~~~~~l~~~~~~~~ 189 (265)
T 3m6b_A 159 AIALVLQQLVLG-------------------------------------------------NALPPDKRALLTDWMARNT 189 (265)
T ss_dssp HHHHHHHHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHC-------------------------------------------------CCCCHHHHHHHHHHHHCCE
T ss_conf 999999999737-------------------------------------------------6568889999999974588
Q ss_pred H-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEE--CC---CEEEEEEEE
Q ss_conf 3-48043210599604676046789702279845--69---879999982
Q gi|254780752|r 663 K-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGY--TP---TLVVGVYVG 706 (817)
Q Consensus 663 ~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~--tp---~~~~~vWvG 706 (817)
. ..........+..+++||||++... ..++|+ .| .|+++|.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~KtG~~~~~~-~~dvgiv~~~~g~~~iiaV~~~ 238 (265)
T 3m6b_A 190 TGAKRIRAGFPADWKVIDKTGTGDYGR-ANDIAVVWSPTGVPYVVAVMSD 238 (265)
T ss_dssp SCTTTHHHHSCTTSEEEEEEEEETTTE-EEEEEEEECTTSCEEEEEEEEE
T ss_pred ECCCCCCCCCCCCCEEEEEECCCCCCC-EEEEEEEECCCCCEEEEEEEEC
T ss_conf 777764456788856888763678774-7999999959999899999957
No 41
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=98.54 E-value=5.7e-07 Score=63.68 Aligned_cols=199 Identities=17% Similarity=0.115 Sum_probs=112.5
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-C-CCCCCCCCCCEEEEECCCCE-EEE
Q ss_conf 31166406566661178721323444332001233566531000012788740-2-46654456523788037852-666
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS-G-YTPASVIMDAPIEVVSRGKI-WKP 516 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~-G-~tp~t~~~D~p~~~~~~~~~-~~p 516 (817)
+-++.++|..||++++.- + +.+++|.|++|.++.+++|++ + ..+ |.++.+....-. +.|
T Consensus 60 ~~gv~~~D~~tG~~~~~n------------~-d~~~~~AS~~Kl~~~~~~l~~~~~~~L-----d~~v~i~~~~~~~~~~ 121 (307)
T 1w7f_A 60 KLGIFALDTGTNRTVTYR------------P-DERFAFASTIKALTVGVLLQQKSIEDL-----NQRITYTRDDLVNYNP 121 (307)
T ss_dssp EEEEEEEETTTCCEEEES------------T-TSCEECGGGHHHHHHHHHHHHCCTGGG-----GCEECCCTTTCCSCCT
T ss_pred EEEEEEEECCCCCEEEEC------------C-CCCCCCHHHHHHHHHHHHHHHCCCCCC-----CCEEEECHHHHHCCCC
T ss_conf 599999989999888888------------9-984032789999999999986576776-----7514663887505897
Q ss_pred EECCCCCCC-HHH----HHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCC----C---CCCCCCCEEHHHH
Q ss_conf 412765442-256----6666653044022588762597-2352110135565556766----5---6344510000377
Q gi|254780752|r 517 ENYSKNFSG-AST----LRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLPV----L---PMSLGAGETTVLR 583 (817)
Q Consensus 517 ~N~~~~~~G-~it----l~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~~----~---s~alG~~~vtpl~ 583 (817)
.- ....| .+| ++..+..|-|+.+..|++.+|. +.+-.+++.+|+..-.... + ...-+....||-+
T Consensus 122 ~~--~~~~g~~~tv~~Ll~~mi~~SdN~Aa~~L~~~lgg~~~~~~~~~~lg~~~t~l~~~~~~~~~~~~~~~~~~tt~~~ 199 (307)
T 1w7f_A 122 IT--EKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARA 199 (307)
T ss_dssp TG--GGCTTTCEEHHHHHHHHHHHCCHHHHHHHHHHTTHHHHHHHHHHHTTCCSCCCCCCTTGGGCCCTTCCTTEECHHH
T ss_pred CC--CCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 40--0268983449999999984684599999999808837899999975951163576676656788886534345999
Q ss_pred HHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
Q ss_conf 67432201574403544666764102443013358532355666666655455467554353589999999999999873
Q gi|254780752|r 584 MVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK 663 (817)
Q Consensus 584 la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~ 663 (817)
|+..+..+..+ ..+++.....+.++|.....
T Consensus 200 ~a~ll~~~~~~-------------------------------------------------~~~~~~~~~~l~~~~~~~~~ 230 (307)
T 1w7f_A 200 LATSLQAFALE-------------------------------------------------DKLPSEKRELLIDWMKRNTT 230 (307)
T ss_dssp HHHHHHHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCC-------------------------------------------------CCCCHHHHHHHHHHHHCCCC
T ss_conf 99999987417-------------------------------------------------53588999999998752452
Q ss_pred CCCEEHH-CCCCCCEEEEECCCCCCCCEEEEEE--CC---CEEEEEEEECC
Q ss_conf 4804321-0599604676046789702279845--69---87999998266
Q gi|254780752|r 664 HGTATGK-VRLNRPVAGKTGTTSSYRDTWFIGY--TP---TLVVGVYVGYD 708 (817)
Q Consensus 664 ~GTg~~a-~~~~~~iaGKTGTt~~~~D~WfvG~--tp---~~~~~vWvG~D 708 (817)
....-++ ...+..++.|||+++... .=++|. .| .|+++|....+
T Consensus 231 ~~~~~~~~~p~~~~v~~KTG~~~~~~-~~dvgiv~~~~g~~~iivVl~~~~ 280 (307)
T 1w7f_A 231 GDALIRAGVPEGWEVADKTGAGSYGT-RNDIAIIWPPKGDPVVLAVLSSRD 280 (307)
T ss_dssp CTTTGGGGSCTTCEEEEEEEECSTTC-EEEEEEEECSSSCCEEEEEEEECS
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEEEECCCCCEEEEEEEECCC
T ss_conf 66544456899856898752658870-678999986999889999992799
No 42
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus G} SCOP: e.3.1.1
Probab=98.46 E-value=6.9e-07 Score=63.11 Aligned_cols=204 Identities=19% Similarity=0.214 Sum_probs=113.7
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---C-CCCCCCCCCCEEEEECCCC---E
Q ss_conf 1166406566661178721323444332001233566531000012788740---2-4665445652378803785---2
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS---G-YTPASVIMDAPIEVVSRGK---I 513 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~---G-~tp~t~~~D~p~~~~~~~~---~ 513 (817)
-++.++|-.||+++++- + +.+++|+|++|.++..++|++ | +.++..+.-.+..+..+.. .
T Consensus 18 ~gv~v~dl~tg~~~~~n------------~-d~~~~~AS~~Kl~~a~~~l~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~ 84 (266)
T 1bsg_A 18 LGVYAYDTGSGRTVAYR------------A-DELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGAPET 84 (266)
T ss_dssp EEEEEEETTTCCEEEES------------T-TSCEECGGGGHHHHHHHHHHHTCSSSTTTTCEECCCHHHHHHHTCCTTT
T ss_pred EEEEEEECCCCCEEEEC------------C-CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCC
T ss_conf 99999989999889988------------9-9805238999999999999998728998676799616772246775542
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCC-----CCCCCC--CCEEHHHHHH
Q ss_conf 6664127654422566666653044022588762597-2352110135565556766-----563445--1000037767
Q gi|254780752|r 514 WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGM-TVVADYAENFGIYDKMLPV-----LPMSLG--AGETTVLRMV 585 (817)
Q Consensus 514 ~~p~N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~-~~~~~~~~~~Gi~~~~~~~-----~s~alG--~~~vtpl~la 585 (817)
..+-..+..+...--++..+..|.|+.+-.|+..+|. +.+..+++++|........ -+...+ ....|+.+|+
T Consensus 85 ~~~~~~g~~~t~~~ll~~mi~~SdN~Aa~~L~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tta~d~a 164 (266)
T 1bsg_A 85 GKPQNLANGMTVEELCEVSITASDNCAANLMLRELGGPAAVTRFVRSLGDRVTRLDRWEPELNSAEPGRVTDTTSPRAIT 164 (266)
T ss_dssp TSHHHHHHCEEHHHHHHHHHHSCCHHHHHHHHHHHTSTHHHHHHHHHTTCSSCCCCSCTTGGGCCCTTCCTTEECHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 10106898313999999999986699999999983793689999999605653035766655678888766625799999
Q ss_pred HHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 43220157440354466676410244301335853235566666665545546755435358999999999999987348
Q gi|254780752|r 586 SAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHG 665 (817)
Q Consensus 586 ~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~G 665 (817)
.....+..+ +.+++.....+..+|...-...
T Consensus 165 ~ll~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 195 (266)
T 1bsg_A 165 RTYGRLVLG-------------------------------------------------DALNPRDRRLLTSWLLANTTSG 195 (266)
T ss_dssp HHHHHHHTS-------------------------------------------------SSSCHHHHHHHHHHHHTCCSCT
T ss_pred HHHHHHHCC-------------------------------------------------CCCCHHHHHHHHHHHHCCEECC
T ss_conf 999999658-------------------------------------------------7348889999999985686466
Q ss_pred CEEH-HCCCCCCEEEEECCCC-CCCCEEEEEECC---CEEEEEEEE
Q ss_conf 0432-1059960467604678-970227984569---879999982
Q gi|254780752|r 666 TATG-KVRLNRPVAGKTGTTS-SYRDTWFIGYTP---TLVVGVYVG 706 (817)
Q Consensus 666 Tg~~-a~~~~~~iaGKTGTt~-~~~D~WfvG~tp---~~~~~vWvG 706 (817)
.... ....+..++.|||++. +.+.-..+-+.| .|+++|+.-
T Consensus 196 ~~~~~~~~~~~~v~~KtG~~~~~~~~d~giv~~~~~~~~ii~V~~~ 241 (266)
T 1bsg_A 196 DRFRAGLPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTA 241 (266)
T ss_dssp TTHHHHSCTTSEEEEEEEECSTTCEEEEEEEECTTSCCEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEEC
T ss_conf 5344447888779988620577735799999918998899999906
No 43
>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583}
Probab=98.31 E-value=1.1e-06 Score=61.81 Aligned_cols=191 Identities=14% Similarity=0.068 Sum_probs=107.4
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEE-EEECCCCEEE
Q ss_conf 116640656666117872132344433200123356653100001278874---02-466544565237-8803785266
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPI-EVVSRGKIWK 515 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~-~~~~~~~~~~ 515 (817)
-++.++|..||++.++ +. ...++|.|++|.++..++|+ +| +.+++.+.=.+- ...++....
T Consensus 52 ~~v~~~dl~tg~~~~~------n~-------~~~~~~AS~~Kl~~~~~~l~~v~~G~l~l~~~v~~~~~~~~~~~~~~~- 117 (282)
T 3cjm_A 52 VGISYLDLETGEQRSV------NG-------QHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEEDYEEGTGII- 117 (282)
T ss_dssp EEEEEEETTTCCEEEE------ST-------TCCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEECCHHHHCCCSSCSG-
T ss_pred EEEEEEECCCCCEEEE------CC-------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHCCCCCCCE-
T ss_conf 9999998999988888------89-------984221888999999999999974998877726861899615898625-
Q ss_pred EEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH
Q ss_conf 6412765442256666----66530440225887625972-352110135565556766563445100003776743220
Q gi|254780752|r 516 PENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT-VVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAV 590 (817)
Q Consensus 516 p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~-~~~~~~~~~Gi~~~~~~~~s~alG~~~vtpl~la~aya~ 590 (817)
.-.....+++++ .+..|-|+++..|++.+|.. .+...+...|+..... ......||-+|+..+..
T Consensus 118 ----~~~~g~~~sl~dLl~~mi~~SdN~Aan~L~~~lGg~~~~~~~~~~~g~~~~~~------~~~~~~T~~d~~~ll~~ 187 (282)
T 3cjm_A 118 ----AYNIQPEYPLKTLQEYAITYSDNIAKNMLYDTLGGDAKAKREMYQRYLHKTPS------IEEPQFSSEDALVILQK 187 (282)
T ss_dssp ----GGSCCSEEEHHHHHHHHHHTCCHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCC------SSSCEECHHHHHHHHHH
T ss_pred ----EECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC------CCCCCCCHHHHHHHHHH
T ss_conf ----72589826699999999984126999999998298499999999705766887------55677789999999999
Q ss_pred CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEHH
Q ss_conf 15744035446667641024430133585323556666666554554675543535899999999999998734804321
Q gi|254780752|r 591 FANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHGTATGK 670 (817)
Q Consensus 591 ~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~~GTg~~a 670 (817)
+..+. ..++....++..|.+........ +
T Consensus 188 l~~~~-------------------------------------------------~~~~~~~~l~~~l~~~~~~~~l~--~ 216 (282)
T 3cjm_A 188 LYTEK-------------------------------------------------ATKPDYQAIYDSMKQSVFHERME--T 216 (282)
T ss_dssp HHHHT-------------------------------------------------TTCHHHHHHHHHHHSCSCCCTTC--C
T ss_pred HHCCC-------------------------------------------------CCCHHHHHHHHHHHCCCCCCCHH--C
T ss_conf 97487-------------------------------------------------78868999999984477873110--2
Q ss_pred CCCCCCEEEEECCCCCCC-CEEEEEECCCEEEEEEEE
Q ss_conf 059960467604678970-227984569879999982
Q gi|254780752|r 671 VRLNRPVAGKTGTTSSYR-DTWFIGYTPTLVVGVYVG 706 (817)
Q Consensus 671 ~~~~~~iaGKTGTt~~~~-D~WfvG~tp~~~~~vWvG 706 (817)
..+...++.|||+....+ |+=+|.....|+++|++.
T Consensus 217 ~lp~~~va~KtG~~~~~~~d~giV~~~~~yiiav~t~ 253 (282)
T 3cjm_A 217 PTTQGKVAHKIGSYDEFIHDMGILETPHPFALAIFTK 253 (282)
T ss_dssp TTTTTSEEEEEEEETTEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEC
T ss_conf 5887806862026577047899995799889999947
No 44
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, structural genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=98.09 E-value=2.8e-06 Score=59.09 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=69.4
Q ss_pred HHHHHCCHHCCCCHHHHHHHHHH---HHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEECCCCCCCCCHHHHHHH
Q ss_conf 43210000001211248877863---332013355541047652144026765203344310000244423488896652
Q gi|254780752|r 323 NDGFRGPIKRIDLKKDWGNTLAS---IPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWV 399 (817)
Q Consensus 323 ~~g~rg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (817)
.||||||+.+++...+......- ...+.....+..+.|+++....+...+. ......+..+.++|+
T Consensus 1 ~HGyRGP~~~i~~~~~~~~~e~~~~~L~~~~~~~~l~pAvV~~v~~~~~~v~~~-----------~g~~~~i~~~~~~Wa 69 (106)
T 3d0f_A 1 SNAYRGPEAFLKLPKDLKDREALQDIMQDIGNSDDILAAVVLSATPGAVEAFRK-----------NGETIRITGDGLKAA 69 (106)
T ss_dssp -CCCCCCSEECCCCSCTTCHHHHHHHTTTSCTTTTCEEEEEEEEETTEEEEEET-----------TSCEEEECGGGGSTT
T ss_pred CCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEC-----------CCCEEEECHHHHHHH
T ss_conf 976788032057877743289999999708875780579999955878999967-----------996699708998877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEECC
Q ss_conf 0011223332100001364631012356-6515775225
Q gi|254780752|r 400 YNKEQTTEETSENRNVLSLGDVIYVEHI-NEGWRLRQIP 437 (817)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~gd~i~i~~~-~~~~~l~~~p 437 (817)
+..-. .......++++.||+||+... +..|+|+|+|
T Consensus 70 r~~~~--~~~k~~~~~l~~GDvI~V~~~~~~~w~L~QiP 106 (106)
T 3d0f_A 70 HRFLS--NDPKIGEKRIRPGALIRVKKTEKGSWQIVQLP 106 (106)
T ss_dssp GGGTT--TCTTTGGGSCCTTEEEEEEECTTSCEEEECCC
T ss_pred HHHCC--CCCCCHHHCCCCCCEEEEEECCCCCEEEEECC
T ss_conf 76504--35555543367798999999899968478279
No 45
>1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1
Probab=98.08 E-value=3.5e-06 Score=58.44 Aligned_cols=204 Identities=16% Similarity=0.086 Sum_probs=110.7
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 3116640656666117872132344433200123356653100001278874---02-4665445652378803785266
Q gi|254780752|r 440 QGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWK 515 (817)
Q Consensus 440 q~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~ 515 (817)
+.++++.|..||++.++-+ ..+++|+|++|.++.+++|+ +| +.+++.+.=.+.....++....
T Consensus 19 ~~gv~v~~~~~~~~~~~n~-------------~~~~~~AS~~Kl~~a~~~l~~i~~g~l~l~~~v~~~~~~~~~~~~~~~ 85 (282)
T 1e25_A 19 TVGVAVWGPDDLEPLLINP-------------FEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPI 85 (282)
T ss_dssp EEEEEEECTTCSSCEEEST-------------TCCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEEEETTTSCCSSCCTH
T ss_pred CEEEEEEECCCCEEEEECC-------------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 5999999899981899889-------------984554899999999999999875998831002576888741688742
Q ss_pred EEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCC-------CCCCCCCEEHHHH
Q ss_conf 6412765442256666----66530440225887625972-3521101355655567665-------6344510000377
Q gi|254780752|r 516 PENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT-VVADYAENFGIYDKMLPVL-------PMSLGAGETTVLR 583 (817)
Q Consensus 516 p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~-~~~~~~~~~Gi~~~~~~~~-------s~alG~~~vtpl~ 583 (817)
.+..-.....+|+++ .+..|.|+.+..|+..+|.. .+..+++++|......... ...-+....||.+
T Consensus 86 -~~~~~~~~~~~t~~~Ll~~mi~~SdN~Aa~~L~~~lgg~~~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n~~Ta~d 164 (282)
T 1e25_A 86 -MKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGPAALHDYIQSMGIKETAVVANEAQMHADDQVQYQNWTSMKG 164 (282)
T ss_dssp -HHHSCSSEEEEEHHHHHHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHTTCCSBCCCCCHHHHHHCTTGGGGSEECHHH
T ss_pred -HHEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf -0021079980569999999999595199999999828846899999983034312346644556555787421331999
Q ss_pred HHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHH
Q ss_conf 67432201574403544666764102443013358532355666666655455467554353589999999999999873
Q gi|254780752|r 584 MVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK 663 (817)
Q Consensus 584 la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~~~L~~vv~ 663 (817)
|+..+..+.++.. +++.....+.+.|.....
T Consensus 165 ~~~ll~~l~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~ 195 (282)
T 1e25_A 165 AAEILKKFEQKTQ-------------------------------------------------LSETSQALLWKWMVETTT 195 (282)
T ss_dssp HHHHHHHHHTTCS-------------------------------------------------SCHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHCCC-------------------------------------------------CCHHHHHHHHHHHHCCCC
T ss_conf 9999999984886-------------------------------------------------688899999999854864
Q ss_pred CCCEEHHC-CCCCCEEEEECCCCCCC----CEEEEEE--CC---CEEEEEEEE
Q ss_conf 48043210-59960467604678970----2279845--69---879999982
Q gi|254780752|r 664 HGTATGKV-RLNRPVAGKTGTTSSYR----DTWFIGY--TP---TLVVGVYVG 706 (817)
Q Consensus 664 ~GTg~~a~-~~~~~iaGKTGTt~~~~----D~WfvG~--tp---~~~~~vWvG 706 (817)
..+..+.. ..+..++.|||+....- -.+.+|+ +| .|+++|...
T Consensus 196 ~~~~l~~~~~~~~~v~~ktG~~~~~gg~~g~~~d~giv~~~~g~~~iiaV~~~ 248 (282)
T 1e25_A 196 GPERLKGLLPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVK 248 (282)
T ss_dssp CTTSTTTTSCTTCCEEEEEEECCEETTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEC
T ss_conf 44331234888875432147645468753489989999869999899999945
No 46
>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis}
Probab=97.26 E-value=0.00012 Score=48.21 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=76.2
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEE--EC
Q ss_conf 1664065666611787213234443320012335665310000127887402466544565237880378526664--12
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPE--NY 519 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~--N~ 519 (817)
+.|+||..||+||.--. .+.+++|.|+-|.++...|||++- +++ .+.+.. ..|... +.
T Consensus 11 saiv~D~~tG~iL~~kn------------~~~~~~pASlTKlmT~~v~le~~~-l~~-----~v~vs~--~a~~~~~s~~ 70 (334)
T 3mfd_A 11 SAIIIDGASGRVLYAKD------------EHQKRRIASITKIMTAVLAIESGK-MDQ-----TVTVSA--NAVRTEGSAI 70 (334)
T ss_dssp EEEEEETTTCCEEEEES------------TTCCBCCGGGGHHHHHHHHHHTTC-TTS-----EEECCH--HHHHCCSSCC
T ss_pred EEEEEECCCCCCHHHCC------------CCCCCCCHHHHHHHHHHHHHHCCC-CCC-----EEEECH--HHHCCCCCEE
T ss_conf 99999999998902069------------099895688999999999995889-998-----699889--9943799535
Q ss_pred CCCCCC-HHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCCC---CCEEHHHHHH
Q ss_conf 765442-256666----66530440225887625972------352110135565556766563445---1000037767
Q gi|254780752|r 520 SKNFSG-ASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSLG---AGETTVLRMV 585 (817)
Q Consensus 520 ~~~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~alG---~~~vtpl~la 585 (817)
. -..| .+++++ .|..|-|-.++-|++.++-. .+-+.|+++|+.+-...+ +.+|- ..-.|+-+||
T Consensus 71 ~-l~~g~~~tv~dLl~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~n-~~GL~~~~~~~sTa~Dla 148 (334)
T 3mfd_A 71 Y-LTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQN-PHGLDDHENHYSTAYDMA 148 (334)
T ss_dssp C-CCTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHTCTTCBCSS-SSCCSCSSSCBBCHHHHH
T ss_pred E-ECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEC-CCCCCCCCCCCCCHHHHH
T ss_conf 3-54898760999999998763577999999872697899999999999995885760146-756758667775699999
Q ss_pred HHHHHCC
Q ss_conf 4322015
Q gi|254780752|r 586 SAYAVFA 592 (817)
Q Consensus 586 ~aya~~A 592 (817)
.....+.
T Consensus 149 ~l~~~~~ 155 (334)
T 3mfd_A 149 ILTKYAM 155 (334)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
T ss_conf 9998640
No 47
>1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, beta-lactamase, hydrolase carboxypeptidase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A
Probab=96.83 E-value=0.00077 Score=42.88 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=81.9
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCEE----EEECCC-CEE
Q ss_conf 11664065666611787213234443320012335665310000127887402-466544565237----880378-526
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDAPI----EVVSRG-KIW 514 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G-~tp~t~~~D~p~----~~~~~~-~~~ 514 (817)
.+.++||..||+|+.--. -+.+++|.|+-|.++...+||+| +.+++.+.-++- ....++ ..+
T Consensus 9 ~~aiv~d~~tG~vL~~kn------------~~~~~~pASlTKlmTa~~~l~~~~l~ld~~vti~~~~~~~~~~~~~s~~~ 76 (262)
T 1es5_A 9 VGGYAMNNGTGTTLYTKA------------ADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAH 76 (262)
T ss_dssp SEEEEEETTTCCEEEEES------------TTCCBCCGGGGHHHHHHHHHTCTTCCTTCEEECCHHHHHHHHHTTCCCCC
T ss_pred CEEEEEECCCCCCHHEEC------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCEEE
T ss_conf 189999999995911269------------09988778899999999999808999887899847676676407872562
Q ss_pred EEEECCCCCCC-HHHHHH----HHHHHCCHHHHHHHHHCCC------------CEEEEEECCCCCCCCCCCCCCCCCC--
Q ss_conf 66412765442-256666----6653044022588762597------------2352110135565556766563445--
Q gi|254780752|r 515 KPENYSKNFSG-ASTLRF----GLEKSRNLMTVRLAHNMGM------------TVVADYAENFGIYDKMLPVLPMSLG-- 575 (817)
Q Consensus 515 ~p~N~~~~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~------------~~~~~~~~~~Gi~~~~~~~~s~alG-- 575 (817)
-..| .+|+++ .|..|.|-.++-|++.+|- +.+-+.++++|+.+-...++ .+|.
T Consensus 77 -------l~~G~~~tv~dLl~~~li~S~NdAA~aLAe~vggg~~~~~s~~~Fv~~MN~~A~~lGm~~T~f~n~-~Gl~~~ 148 (262)
T 1es5_A 77 -------LIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSF-DGIGNG 148 (262)
T ss_dssp -------CCTTCEEEHHHHHHHHHSSCCHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHTTCSSCBCSSS-SCCSCT
T ss_pred -------ECCCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCC
T ss_conf -------259989779999999998615699999998538986321209999999999999837865543046-765445
Q ss_pred CCEEHHHHHHHHHHHCCCC
Q ss_conf 1000037767432201574
Q gi|254780752|r 576 AGETTVLRMVSAYAVFANG 594 (817)
Q Consensus 576 ~~~vtpl~la~aya~~AN~ 594 (817)
..-.|+-+||.....+...
T Consensus 149 ~n~sTa~Dla~l~~~~l~~ 167 (262)
T 1es5_A 149 ANYSTPRDLTKIASSAMKN 167 (262)
T ss_dssp TCBBCHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHCCC
T ss_conf 7758999999999985126
No 48
>2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis}
Probab=96.26 E-value=0.0043 Score=37.91 Aligned_cols=131 Identities=22% Similarity=0.217 Sum_probs=77.1
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCC
Q ss_conf 16640656666117872132344433200123356653100001278874024665445652378803785266641276
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSK 521 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale~G~tp~t~~~D~p~~~~~~~~~~~p~N~~~ 521 (817)
+.++||..||+||.=-. .+.+++|.|+-|.++...+||+. .+...+..........+. +. +
T Consensus 21 saiv~D~~tG~iL~~kn------------~d~~~~pASlTKlMTa~v~le~~-~~~~~v~~~~~~~~~~~s-----~~-~ 81 (276)
T 2bcf_A 21 TWIVADLDSGQVLAGRD------------QNVAHPPASTIKVLLALVALDEL-DLNSTVVADVADTQAECN-----CV-G 81 (276)
T ss_dssp EEEEEETTTCEEEEEES------------TTCCBCCGGGHHHHHHHHHHHHC-CTTCEEECCTGGGCCSSC-----CC-C
T ss_pred EEEEEECCCCCEEEEEC------------CCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEHHHHHHHCE-----EE-E
T ss_conf 89999999998900049------------29982738999999999999834-789869974455442210-----34-3
Q ss_pred CCCC-HHHHHH----HHHHHCCHHHHHHHHHCCCC-----EEEEEECCCCCCCCCCCCCCCCC----CCCEEHHHHHHHH
Q ss_conf 5442-256666----66530440225887625972-----35211013556555676656344----5100003776743
Q gi|254780752|r 522 NFSG-ASTLRF----GLEKSRNLMTVRLAHNMGMT-----VVADYAENFGIYDKMLPVLPMSL----GAGETTVLRMVSA 587 (817)
Q Consensus 522 ~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~~-----~~~~~~~~~Gi~~~~~~~~s~al----G~~~vtpl~la~a 587 (817)
-..| .+|+++ .|..|.|-.++-|++.+|-. .+-+.++++|+.+-...+++ +| +..-.|+.+|+..
T Consensus 82 l~~G~~~tv~dLl~~~lv~S~NdAA~aLA~~~gg~~~Fv~~MN~~A~~lGm~~T~F~np~-Gl~~~~~~~~sTA~Dla~l 160 (276)
T 2bcf_A 82 VKPGRSYTVRQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKAATLGATSTHATTPS-GLDGPGGSGASTAHDLVVI 160 (276)
T ss_dssp CCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTCBCSSSS-SSCBTTBSCBBCHHHHHHH
T ss_pred ECCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCC-CCCCCCCCCCCCHHHHHHH
T ss_conf 269989999999988988623779999888756975799999999998497756606787-7999875554689999999
Q ss_pred HHHCC
Q ss_conf 22015
Q gi|254780752|r 588 YAVFA 592 (817)
Q Consensus 588 ya~~A 592 (817)
...+.
T Consensus 161 ~~~~~ 165 (276)
T 2bcf_A 161 FRAAM 165 (276)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
No 49
>1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD- carboxypeptidase, hydrolase, boronic acid; HET: BO9; 1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A
Probab=95.79 E-value=0.0036 Score=38.42 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=75.3
Q ss_pred CCCCC-EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCCCEEEEECCC
Q ss_conf 55531-1664065666611787213234443320012335665310000127887---402-466544565237880378
Q gi|254780752|r 437 PKVQG-GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMDAPIEVVSRG 511 (817)
Q Consensus 437 p~~q~-a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D~p~~~~~~~ 511 (817)
|++++ |.++||..||+||.=- -.+.+++|+|+-|.++...+| ++| +.+.+.+. +..
T Consensus 13 P~i~a~aaiv~d~~tG~iL~~k------------n~~~~~~~ASlTKlMTa~v~le~i~~g~l~~~~~v~-----vs~-- 73 (363)
T 1z6f_A 13 PQIDAESYILIDYNSGKVLAEQ------------NADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVT-----IGN-- 73 (363)
T ss_dssp CCCSEEEEEEEETTTCCEEEEE------------STTCCBCCGGGHHHHHHHHHHHHHHTTSCCTTCEEE-----CCG--
T ss_pred CCCCCEEEEEEECCCCCCHHEE------------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE-----ECH--
T ss_conf 9765209999999999890006------------909981868999999999999998739998565698-----338--
Q ss_pred CEEE---EEECCC----CCCC-HHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCC
Q ss_conf 5266---641276----5442-256666----66530440225887625972------3521101355655567665634
Q gi|254780752|r 512 KIWK---PENYSK----NFSG-ASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMS 573 (817)
Q Consensus 512 ~~~~---p~N~~~----~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~a 573 (817)
..|. +..-++ -..| .+|+++ .|..|-|-.++-|++.+|-. .+-+.|+++|+.+-...+++ +
T Consensus 74 ~a~~~~~~~~~~~s~~~l~~ge~~tv~dLl~~lli~SaNdAA~aLAe~~~Gs~~~Fv~~MN~kA~elG~~~T~f~np~-G 152 (363)
T 1z6f_A 74 DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH-G 152 (363)
T ss_dssp GGCGGGCGGGTTSCCCCCCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCCSSS-C
T ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCC-C
T ss_conf 998523663358751134589899999999998765643999999986389999999999999999605665044368-8
Q ss_pred C--CCCEEHHHHHHHHHHHC
Q ss_conf 4--51000037767432201
Q gi|254780752|r 574 L--GAGETTVLRMVSAYAVF 591 (817)
Q Consensus 574 l--G~~~vtpl~la~aya~~ 591 (817)
| ...-.|.-+||..-..+
T Consensus 153 l~~~~~~tta~Dla~l~~~~ 172 (363)
T 1z6f_A 153 LDADGQYSSARDMALIGQAL 172 (363)
T ss_dssp CCCTTCBBCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 87246737789999889998
No 50
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=95.52 E-value=0.0018 Score=40.46 Aligned_cols=103 Identities=9% Similarity=0.150 Sum_probs=76.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---HHHCHHHHHHHHHH
Q ss_conf 338737999999999986320478867761147999888877088832999999999999998---66079999999720
Q gi|254780752|r 97 YHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLE---KAYDKEKILEFYLN 173 (817)
Q Consensus 97 ~H~GvD~~gi~RA~~~ni~~~~~g~~~qGgSTITQQlaKn~~l~~e~t~~RK~~E~~lA~~lE---~~~sK~eILe~YLN 173 (817)
.+...|+..+.+.+.. -.....++++++..++.++..+..+.++++++....+++ .+.+++++++.+++
T Consensus 87 ~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (680)
T 2wad_A 87 KMTATDLKEIAKKLLT--------YVSISSPNLTERQLADYYLADPEIYKKTVEALPSEKRLDSDGNRLSESELYNNAVD 158 (680)
T ss_dssp TCCHHHHHHHHHHHTT--------TSCCCCCCCCHHHHHHHHHTSHHHHHHHHTTCC-------------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2442359999999988--------73577277778877777513888888888764567766655544029999887664
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEE
Q ss_conf 1426743310999999873542344030271254
Q gi|254780752|r 174 EIFFGFNSYGIASAALTYFNKSVSELTIEEAAYL 207 (817)
Q Consensus 174 ~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~L 207 (817)
.++.....|.....-..|+.+........+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (680)
T 2wad_A 159 SVPTSQLNYTEDEKKEIYLFSQLNAVGNFATGTI 192 (680)
T ss_dssp HSSCSCCCCCHHHHHHHHHHHHHHTSCTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 4235654344777888999987520124553145
No 51
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A*
Probab=95.45 E-value=0.0065 Score=36.74 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=74.6
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCE--EEEE---CCCC
Q ss_conf 16640656666117872132344433200123356653100001278874---02-46654456523--7880---3785
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAP--IEVV---SRGK 512 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p--~~~~---~~~~ 512 (817)
|.++||..||+||.=- + .+.+++|+|+-|.++...+|| .| +++.+.+.=+. .... ..+.
T Consensus 15 aaiv~d~~tG~iL~~k-------n-----~~~~~~pASlTKlMTa~v~~e~i~~~~~~l~~~v~vs~~a~~~~~~~~~~~ 82 (352)
T 3ita_A 15 AWILMDYASGKVLAEG-------N-----ADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGS 82 (352)
T ss_dssp EEEEEETTTCCEEEEE-------S-----TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCGGGSTTTCGGGTTS
T ss_pred EEEEEECCCCCCHHHC-------C-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCC
T ss_conf 9999999999796325-------9-----099862289999999999999876389997866994699985104455687
Q ss_pred EEEEEECCCCCCC-HHHHHH----HHHHHCCHHHHHHHHHCCC------CEEEEEECCCCCCCCCCCCCCCCCC--CCEE
Q ss_conf 2666412765442-256666----6653044022588762597------2352110135565556766563445--1000
Q gi|254780752|r 513 IWKPENYSKNFSG-ASTLRF----GLEKSRNLMTVRLAHNMGM------TVVADYAENFGIYDKMLPVLPMSLG--AGET 579 (817)
Q Consensus 513 ~~~p~N~~~~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~------~~~~~~~~~~Gi~~~~~~~~s~alG--~~~v 579 (817)
.+.+ --.| .+|+++ .|..|-|-.++-|++.+|- +.+-+.|+++|+.+-...+++ +|- ..-.
T Consensus 83 s~~~-----l~~g~~~tv~dLL~~~li~SaNdAA~aLA~~i~Gs~~~Fv~~MN~kAkelG~~~T~f~np~-Gl~~~~~~t 156 (352)
T 3ita_A 83 SVMF-----LKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVH-GLDAPGQFS 156 (352)
T ss_dssp SCCC-----CCTTCEEEHHHHHHHHHTTCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCTTCBCCCSS-CCCCTTCBB
T ss_pred CEEE-----ECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCC
T ss_conf 3354-----1389999999999998875152999999875289999999999999998489982155777-778755634
Q ss_pred HHHHHHHHHHH
Q ss_conf 03776743220
Q gi|254780752|r 580 TVLRMVSAYAV 590 (817)
Q Consensus 580 tpl~la~aya~ 590 (817)
|+-+||..-..
T Consensus 157 ta~Dla~l~~~ 167 (352)
T 3ita_A 157 TARDMALLGKA 167 (352)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 69999999999
No 52
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative; 2.07A {Geobacillus kaustophilus HTA426}
Probab=95.36 E-value=0.13 Score=28.07 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817)
Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817)
+.++|..+||.+-+++||+|+. |. ..+||++++++..+.
T Consensus 197 si~~t~~dLA~~aatLAn~G~~--P~---------------------------------------tg~~vi~~~~~r~v~ 235 (308)
T 2pby_A 197 AIEMTCIDLARIGLVLALDGRD--PH---------------------------------------SSEPLMPLDVARICK 235 (308)
T ss_dssp TBEECHHHHHHHHHHHHTTTBC--TT---------------------------------------TCCBSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCEECCHHHHHHHH
T ss_conf 8522499999999999678948--88---------------------------------------777336889999999
Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999873-4804321059960467604678970227984569-87999998266898278986442121799999999
Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMK 732 (817)
Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~ 732 (817)
.+|...-- ..+|.-+...|.| +|+|.+= =.++..| .+.++||- | ++ +..|.++++--.-+.+.
T Consensus 236 s~M~tcGmYd~SG~fa~~VGlP--aKSGVgG-----gIlavvPg~~gIav~S----P-~L--D~~GNSv~G~~~le~ls 300 (308)
T 2pby_A 236 TFMVTCGMYNSSGEFAIKVGIP--AKSGVSG-----GILAAVPGRCGIGVFG----P-AL--DDKGNSLTGVKLLERLS 300 (308)
T ss_dssp HHHHHSSSTTCHHHHHHHTCSC--EEECTTS-----EEEEEETTTEEEEEEC----C-CB--CTTSSBHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHCCCC--CCCCCCC-----EEEEEECCCEEEEEEC----C-CC--CCCCCCHHHHHHHHHHH
T ss_conf 9997558842302379980862--1125774-----3899957960899989----8-86--88888699999999999
No 53
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Probab=95.27 E-value=0.0029 Score=39.04 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCCCC-EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCC--CEEEEEC
Q ss_conf 55531-1664065666611787213234443320012335665310000127887---402-466544565--2378803
Q gi|254780752|r 437 PKVQG-GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMD--APIEVVS 509 (817)
Q Consensus 437 p~~q~-a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D--~p~~~~~ 509 (817)
+.+++ +.++||..||+||.=- -.+.+++|.|+-|.++...+| ++| +++.+.+.= .+.....
T Consensus 10 ~~i~A~saiv~d~~tG~iL~~k------------n~~~~~~pASlTKlMTa~v~le~i~~g~i~l~~~v~vs~~~~~~~~ 77 (379)
T 1xp4_A 10 FTIAAKHAIAVEANTGKILYEK------------DATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQLTT 77 (379)
T ss_dssp CCCSBSSEEEEETTTTEEEEEE------------SCSSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEECCHHHHHTTT
T ss_pred CCCCCCEEEEEECCCCCEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCC
T ss_conf 9744458999999999791455------------9099887889999999999999987699998847994589986327
Q ss_pred CCCEEEEEECCCCCCC-HHHHHHH----HHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCC
Q ss_conf 7852666412765442-2566666----6530440225887625972------352110135565556
Q gi|254780752|r 510 RGKIWKPENYSKNFSG-ASTLRFG----LEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKM 566 (817)
Q Consensus 510 ~~~~~~p~N~~~~~~G-~itl~~A----l~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~ 566 (817)
. ....++.. .| .+|+++. |..|.|-.++-|++.++-. .+-+.|+++|+.+-.
T Consensus 78 ~---~~~s~~~~--~G~~~tv~dLl~~lli~S~NdAA~aLA~~i~Gs~~~Fv~~MN~kA~elGm~~T~ 140 (379)
T 1xp4_A 78 N---SEASNIPM--EARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDAT 140 (379)
T ss_dssp S---CCSSCCCC--TTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCCSCB
T ss_pred C---CCCCCCCC--CCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8---65310102--786167999999998863788999999982683999999999999980996446
No 54
>3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus} PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=95.19 E-value=0.069 Score=29.94 Aligned_cols=105 Identities=22% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817)
Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817)
+.++|..+||.+.+++||+|+. |. ..+||++++++..+.
T Consensus 196 Si~vt~~dLA~maatLAN~Gv~--P~---------------------------------------Tg~~vl~~~~~r~vl 234 (456)
T 3ih8_A 196 AVLVTVKDLAVMGACLATGGIH--PM---------------------------------------TGERMLPSIVARRVV 234 (456)
T ss_dssp TBEECHHHHHHHHHHHHTTSBC--TT---------------------------------------TCCBCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCEECCHHHHHHHH
T ss_conf 8506699999999999679959--99---------------------------------------888656899999999
Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999873-4804321059960467604678970227984569-879999982668982789864421217999999999
Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKE 733 (817)
Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~~ 733 (817)
.+|...-- ..+|.-+...|.| +|.|.+= =.++..| ++.++||- | ++ +..|.++++--.-+.+.+
T Consensus 235 svM~TcGmYD~SG~fa~~VGlP--aKSGVgG-----GI~avvPg~~GIav~S----P-~L--D~~GNSvrG~~~le~ls~ 300 (456)
T 3ih8_A 235 SVMTSSGMYDAAGQWLADVGIP--AKSGVAG-----GVLGALPGRVGIGVFS----P-RL--DEVGNSARGVLACRRLSE 300 (456)
T ss_dssp HHHHHHTTGGGHHHHHHHTCCC--EEECTTS-----EEEEEETTTEEEEEEC----C-CB--CTTSSBHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCC--EECCCCC-----EEEEEECCCEEEEEEC----C-CC--CCCCCCHHHHHHHHHHHH
T ss_conf 9985368862234489980863--1016871-----4999928963899988----8-76--878887999999999999
Q ss_pred HH
Q ss_conf 97
Q gi|254780752|r 734 AL 735 (817)
Q Consensus 734 ~~ 735 (817)
-+
T Consensus 301 ~~ 302 (456)
T 3ih8_A 301 DF 302 (456)
T ss_dssp HH
T ss_pred HH
T ss_conf 83
No 55
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Probab=95.18 E-value=0.0028 Score=39.12 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=65.3
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf 16640656666117872132344433200123356653100001278874---02-466544565237880378526664
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWKPE 517 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~p~ 517 (817)
+.++||..||+||.=- + .+.+++|.|+-|.++...+|| +| +++++.+.-+...+... ..+...
T Consensus 72 sail~da~tG~iLy~K-------N-----~d~~~~pASlTKlMTa~l~le~i~~g~l~ld~~vtis~~a~~~~-~~~~~S 138 (453)
T 3hun_A 72 TSAVNVSQTGQLLYQY-------N-----IDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMS-TLPELS 138 (453)
T ss_dssp SEEEEEETTSBEEEEE-------S-----TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHT-TCTTCC
T ss_pred EEEEEECCCCCEEEEE-------C-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHC-CCCCCC
T ss_conf 1799998999493357-------8-----49885844999999999999998637988212566899999852-588876
Q ss_pred ECCCCCCC-HHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCC
Q ss_conf 12765442-256666----66530440225887625972------352110135565556
Q gi|254780752|r 518 NYSKNFSG-ASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKM 566 (817)
Q Consensus 518 N~~~~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~ 566 (817)
+.. -..| .+|+++ .|..|-|-.++-|++.++-. .+-+.|+++|+.+-.
T Consensus 139 ~~~-l~~G~~~tv~dLL~~lli~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~ 197 (453)
T 3hun_A 139 NTK-LYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 197 (453)
T ss_dssp CCC-CCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTCTTCB
T ss_pred CEE-ECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 214-52897988999998767744279999999981898999999999999983898876
No 56
>3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase, SGC, structural genomics consortium, alternative splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo sapiens}
Probab=95.09 E-value=0.061 Score=30.27 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817)
Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817)
+.++|..+||.+-+++||+|+. | ...+|+++++++..+.
T Consensus 201 Si~vt~~dlA~~aa~LAn~G~~--P---------------------------------------~tg~~v~~~~~~~~v~ 239 (315)
T 3czd_A 201 SIEVTCESASVMAATLANGGFC--P---------------------------------------ITGERVLSPEAVRNTL 239 (315)
T ss_dssp TEEECHHHHHHHHHHHHTTTBC--T---------------------------------------TTCCBCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCC--C---------------------------------------CCCCEECCHHHHHHHH
T ss_conf 3235799999999999749958--9---------------------------------------9899745899999999
Q ss_pred HHHHHHH-HCCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999987-34804321059960467604678970227984569-87999998266898278986442121799999999
Q gi|254780752|r 656 SMLEGVI-KHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMK 732 (817)
Q Consensus 656 ~~L~~vv-~~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~ 732 (817)
.+|...- -..+|.-+...|.| +|.|.+=. .++..| .+.++||- | ++ +..|.++++--+-+.+.
T Consensus 240 s~M~tcGmYd~SG~fa~~VGlP--aKSGV~Gg-----IlavvPg~~gIav~S----P-~L--D~~GNSv~G~~~~~~ls 304 (315)
T 3czd_A 240 SLMHSCGMYDFSGQFAFHVGLP--AKSGVAGG-----ILLVVPNVMGMMCWS----P-PL--DKMGNSVKGIHFCHDLV 304 (315)
T ss_dssp HHHHHHTTGGGHHHHHHHTCSC--EEECTTSE-----EEEEETTTEEEEEEC----S-EE--CTTSSBHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHCCCC--CCCCCCCE-----EEEEECCCCEEEEEC----C-CC--CCCCCCHHHHHHHHHHH
T ss_conf 9987549985477899990882--01476653-----899948970899989----8-86--88888699999999999
No 57
>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae}
Probab=95.05 E-value=0.008 Score=36.15 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=72.4
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHCC-CCCCCCCC--CCEEEEECCCCEEE
Q ss_conf 16640656666117872132344433200123356653100001278---87402-46654456--52378803785266
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAA---ALDSG-YTPASVIM--DAPIEVVSRGKIWK 515 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~---Ale~G-~tp~t~~~--D~p~~~~~~~~~~~ 515 (817)
+.++||..||+||.=- + .+.+++|.|+-|.++... +|++| +++.+.+. +........++.
T Consensus 11 saiv~d~~tG~iL~~k-------n-----~~~~~~pASlTKlMTa~v~l~~i~~g~l~~~~~vtvs~~~~~~~~~~~s-- 76 (344)
T 3a3j_A 11 TYVLMDYNSGAILTAL-------N-----PDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAWGRNFPDSS-- 76 (344)
T ss_dssp EEEEEETTTCCEEEEE-------S-----TTSCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCTTTCGGGCTTSC--
T ss_pred EEEEEECCCCCEEHEE-------C-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCC--
T ss_conf 9999999999690206-------9-----0988853999999999999999974999867889964999850589873--
Q ss_pred EEECCCCCCCHHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCCCCCCCCCC--CCCEEHHHH
Q ss_conf 6412765442256666----66530440225887625972------35211013556555676656344--510000377
Q gi|254780752|r 516 PENYSKNFSGASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKMLPVLPMSL--GAGETTVLR 583 (817)
Q Consensus 516 p~N~~~~~~G~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~~~~~s~al--G~~~vtpl~ 583 (817)
+..-+-...+|+++ .|..|-|-.++-|++.+|-. .+-+.|+++|+.+-...+++ +| ...-.|.-+
T Consensus 77 --~~~l~~ge~~tv~dLL~~lll~S~NdAA~alAe~i~Gs~~~Fv~~MN~~A~~lG~~~T~f~np~-Gl~~~~~~ttA~D 153 (344)
T 3a3j_A 77 --KMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPH-GLDDPNQYSSARD 153 (344)
T ss_dssp --CCCCCTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSSCBCSSSS-CCCCTTCBBCHHH
T ss_pred --EEEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC-EECCCCCCCCHHH
T ss_conf --2533489768899998777651388099999988089899999999999998388535887453-2358887665999
Q ss_pred HHHHHH
Q ss_conf 674322
Q gi|254780752|r 584 MVSAYA 589 (817)
Q Consensus 584 la~aya 589 (817)
||..-.
T Consensus 154 la~l~~ 159 (344)
T 3a3j_A 154 MAIIGA 159 (344)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 58
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A*
Probab=95.04 E-value=0.16 Score=27.45 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=67.9
Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817)
Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817)
+.++|..+||.+.+++||+|+. | ...+||++++++..+.
T Consensus 209 si~vt~~dLA~~aa~LAN~G~~--P---------------------------------------~t~~~vl~~~~~r~v~ 247 (330)
T 1mki_A 209 AMESTTEDIALIGLILAHDGYH--P---------------------------------------IRHEQVIPKDVAKLAK 247 (330)
T ss_dssp TBEECHHHHHHHHHHHHTTTEE--T---------------------------------------TTTEECSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCC--C---------------------------------------CCCCEECCHHHHHHHH
T ss_conf 7225799999999999779958--9---------------------------------------9888316899999999
Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECCC-----------EEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99999873-48043210599604676046789702279845698-----------7999998266898278986442121
Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPT-----------LVVGVYVGYDIPAPLNNHATGSTLT 723 (817)
Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp~-----------~~~~vWvG~D~~~~~~~~~~G~~~a 723 (817)
.+|...-- ..+|.-+...|.| +|+|.+= =.++..|. +.++||- | + -+..|.+++
T Consensus 248 s~M~TcGmYd~SG~fa~~VGlP--aKSGVgG-----gIlavvPg~ggi~~~vp~~~gIav~S----P-~--LD~~GNSv~ 313 (330)
T 1mki_A 248 ALMLTCGMYNASGKYAAFVGVP--AKSGVSG-----GIMALVPPSARREQPFQSGCGIGIYG----P-A--IDEYGNSLT 313 (330)
T ss_dssp HHHHHHTTGGGHHHHHHHTCSC--EEECTTS-----EEEEEECTTTTCSSTTTTCEEEEEEC----S-C--BCTTSSBHH
T ss_pred HHHHHCCCHHHHHHHHHHHCCC--CCCCCCC-----EEEEEECCCCCCCCCCCCCEEEEEEC----C-C--CCCCCCCHH
T ss_conf 9987568502234389983865--0026776-----05999678666454467760699988----8-7--688888599
Q ss_pred HHHHHHHHHH
Q ss_conf 7999999999
Q gi|254780752|r 724 APIFNAFMKE 733 (817)
Q Consensus 724 ~piw~~~m~~ 733 (817)
+-.+-+.+..
T Consensus 314 G~~~le~ls~ 323 (330)
T 1mki_A 314 GGMLLKHMAQ 323 (330)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 59
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=94.35 E-value=0.0076 Score=36.28 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=62.6
Q ss_pred EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC-CCCCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 6640656666117872132344433200123356653100001278874---02-4665445652378803785266641
Q gi|254780752|r 443 LIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALD---SG-YTPASVIMDAPIEVVSRGKIWKPEN 518 (817)
Q Consensus 443 ~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~Ale---~G-~tp~t~~~D~p~~~~~~~~~~~p~N 518 (817)
.++||..||+||.=- | ...+++|+|+-|.++...+|| +| +++.+.+.-++..+... ..+...+
T Consensus 37 ~~vv~~~TG~iLy~K----------N--~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~-~~~~~S~ 103 (369)
T 1tvf_A 37 SAVNVSQTGQLLYQY----------N--IDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMS-TLPELSN 103 (369)
T ss_dssp EEEEEETTSBEEEEE----------S--TTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHT-TCTTSCC
T ss_pred EEEEECCCCCEEEEE----------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHC-CCCCCCC
T ss_conf 699997899294267----------8--09982878999999999999988638988344713579999734-5877761
Q ss_pred CCCCCCC-HHHHHH----HHHHHCCHHHHHHHHHCCCC------EEEEEECCCCCCCCC
Q ss_conf 2765442-256666----66530440225887625972------352110135565556
Q gi|254780752|r 519 YSKNFSG-ASTLRF----GLEKSRNLMTVRLAHNMGMT------VVADYAENFGIYDKM 566 (817)
Q Consensus 519 ~~~~~~G-~itl~~----Al~~S~N~~~v~l~~~~G~~------~~~~~~~~~Gi~~~~ 566 (817)
. +-..| .+|+++ .|..|.|-.++-|++.++-. .+-+.|+++|+.+-.
T Consensus 104 ~-~l~~G~~~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~ 161 (369)
T 1tvf_A 104 T-KLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTH 161 (369)
T ss_dssp C-CCCTTCEEEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCB
T ss_pred E-EECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 2-443897975999999876447778999999870477799999999999984889875
No 60
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=93.84 E-value=0.13 Score=28.06 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=67.8
Q ss_pred CCEEHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHH
Q ss_conf 10000377674322015744035446667641024430133585323556666666554554675543535899999999
Q gi|254780752|r 576 AGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655 (817)
Q Consensus 576 ~~~vtpl~la~aya~~AN~G~~~~P~~i~kI~d~~G~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~a~~~~ 655 (817)
+.++|.-+||.+.+++||+|+. |. ..+||++++++..+.
T Consensus 197 Si~vt~~dLA~~aatLAN~Gv~--P~---------------------------------------t~~~v~~~~~~r~v~ 235 (310)
T 1u60_A 197 STLLNTIELATLGATLAAGGVN--PL---------------------------------------THKRVLQADNVPYIL 235 (310)
T ss_dssp TEEECHHHHHHHHHHHHTTSEE--TT---------------------------------------TTEECSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCC--CC---------------------------------------CCCEECCHHHHHHHH
T ss_conf 2460099999999999769938--99---------------------------------------888107889999999
Q ss_pred HHHHHHHH-CCCEEHHCCCCCCEEEEECCCCCCCCEEEEEECC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999873-4804321059960467604678970227984569-87999998266898278986442121799999999
Q gi|254780752|r 656 SMLEGVIK-HGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTP-TLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMK 732 (817)
Q Consensus 656 ~~L~~vv~-~GTg~~a~~~~~~iaGKTGTt~~~~D~WfvG~tp-~~~~~vWvG~D~~~~~~~~~~G~~~a~piw~~~m~ 732 (817)
.+|...-- ..+|.-+...|.| +|.|-+= =.++..| .+.++||- | ++ +..|.++++-.+-+.+.
T Consensus 236 s~M~tcGmYd~SG~fa~~VGlP--aKSGVgG-----gI~avvPg~~gIav~S----P-~L--D~~GNSv~G~~~le~ls 300 (310)
T 1u60_A 236 AEMMMEGLYGRSGDWAYRVGLP--GKSGVGG-----GILAVVPGVMGIAAFS----P-PL--DEDGNSVRGQKMVASVA 300 (310)
T ss_dssp HHHHHHTTGGGHHHHHHHTCSC--EEECTTS-----EEEEEETTTEEEEEEC----S-CB--CTTSCBHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCC--CCCCCCC-----EEEEEECCCEEEEEEC----C-CC--CCCCCCHHHHHHHHHHH
T ss_conf 9986458742467899990976--1147884-----3899948960899989----8-87--98888799999999999
No 61
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Probab=91.84 E-value=0.17 Score=27.40 Aligned_cols=67 Identities=18% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCC-------------EEEEEECCCCCCCCCCC-CCCCCCC-CCEEHHHHHHHHHHHC
Q ss_conf 5666666530440225887625972-------------35211013556555676-6563445-1000037767432201
Q gi|254780752|r 527 STLRFGLEKSRNLMTVRLAHNMGMT-------------VVADYAENFGIYDKMLP-VLPMSLG-AGETTVLRMVSAYAVF 591 (817)
Q Consensus 527 itl~~Al~~S~N~~~v~l~~~~G~~-------------~~~~~~~~~Gi~~~~~~-~~s~alG-~~~vtpl~la~aya~~ 591 (817)
--++..+..|.|..|=.|+..+|.. .+.++++++|+...... .-..+|- ..-+||-+|+..-..+
T Consensus 275 ~il~~mlk~SdN~~AE~L~~~lg~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~DGSGLSr~N~it~~~l~~lL~~~ 354 (453)
T 3a3d_A 275 DLLKKMMKKSDNQIADSLFRAVAFNYYKRPASFQLGTLAVKSILQKQGIRFGNSILADGSGLSRHNLVAPKTMLSVLEYI 354 (453)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTTCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999984597189999999998874589860778898888899972999765255277777734431899999999998
Q ss_pred CC
Q ss_conf 57
Q gi|254780752|r 592 AN 593 (817)
Q Consensus 592 AN 593 (817)
..
T Consensus 355 ~~ 356 (453)
T 3a3d_A 355 AK 356 (453)
T ss_dssp HH
T ss_pred HH
T ss_conf 75
No 62
>2ex2_A Penicillin-binding protein 4; cephem, penem, D- alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine- endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
Probab=88.05 E-value=0.22 Score=26.58 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCEE-------------EE-EECCCCCCCCCCC-CCCCCCC-CCEEHHHHHHHHHHHC
Q ss_conf 66666653044022588762597235-------------21-1013556555676-6563445-1000037767432201
Q gi|254780752|r 528 TLRFGLEKSRNLMTVRLAHNMGMTVV-------------AD-YAENFGIYDKMLP-VLPMSLG-AGETTVLRMVSAYAVF 591 (817)
Q Consensus 528 tl~~Al~~S~N~~~v~l~~~~G~~~~-------------~~-~~~~~Gi~~~~~~-~~s~alG-~~~vtpl~la~aya~~ 591 (817)
-++..+..|.|..+=.|+..+|.... .+ ...++|+...... .-..+|. ..-+||.+|+..-..+
T Consensus 279 l~~~m~~~SdN~~Ae~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dgSGLSr~n~~t~~~~~~~L~~~ 358 (458)
T 2ex2_A 279 LLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYI 358 (458)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHHHTSCCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998535827999999999988744898726679999999999860888655243047887655655999999999998
Q ss_pred C
Q ss_conf 5
Q gi|254780752|r 592 A 592 (817)
Q Consensus 592 A 592 (817)
.
T Consensus 359 ~ 359 (458)
T 2ex2_A 359 A 359 (458)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 63
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2wke_A*
Probab=87.07 E-value=0.45 Score=24.48 Aligned_cols=67 Identities=16% Similarity=0.033 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCC------------EEEEEECCCCCCCCCCC-CCCCCCC-CCEEHHHHHHHHHHHCC
Q ss_conf 5666666530440225887625972------------35211013556555676-6563445-10000377674322015
Q gi|254780752|r 527 STLRFGLEKSRNLMTVRLAHNMGMT------------VVADYAENFGIYDKMLP-VLPMSLG-AGETTVLRMVSAYAVFA 592 (817)
Q Consensus 527 itl~~Al~~S~N~~~v~l~~~~G~~------------~~~~~~~~~Gi~~~~~~-~~s~alG-~~~vtpl~la~aya~~A 592 (817)
--++..+..|.|..+=.|+..+|.. .+.++++++|+...... .-..+|. ..-+||-+|+..-..+.
T Consensus 289 ~il~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~~~~~~~~~l~~~gi~~~~~~l~DGSGLSr~nriSp~~l~~lL~~~~ 368 (489)
T 1w79_A 289 EILVPFMKFSNNGHAEMLVKSIGQETAGAGTWDAGLVGVEEALSGLGVDTAGLVLNDGSGLSRGNLVTADTVVDLLGQAG 368 (489)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTCCCTTCBCSCSSSCSTTCBBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999986366599999999999974489977899999999998658985674770588788666659999999999988
Q ss_pred C
Q ss_conf 7
Q gi|254780752|r 593 N 593 (817)
Q Consensus 593 N 593 (817)
+
T Consensus 369 ~ 369 (489)
T 1w79_A 369 S 369 (489)
T ss_dssp T
T ss_pred H
T ss_conf 5
No 64
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=86.20 E-value=0.57 Score=23.83 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCC------------CEEEEEECCCCCCCCCCCCCCCCCCC-----CEEHHHHHHHHHH
Q ss_conf 566666653044022588762597------------23521101355655567665634451-----0000377674322
Q gi|254780752|r 527 STLRFGLEKSRNLMTVRLAHNMGM------------TVVADYAENFGIYDKMLPVLPMSLGA-----GETTVLRMVSAYA 589 (817)
Q Consensus 527 itl~~Al~~S~N~~~v~l~~~~G~------------~~~~~~~~~~Gi~~~~~~~~s~alG~-----~~vtpl~la~aya 589 (817)
--++..+..|.|..|=.|+..+|. ..+.++++++|+... .+.+.=|+ .-+||-+|+..-.
T Consensus 290 ~lv~~mlk~SdN~~AE~L~~~lg~~~~~~~s~~~g~~~v~~~l~~~gi~~~---~~~l~DGSGLSr~Nrisp~~l~~lL~ 366 (462)
T 1w5d_A 290 KLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKGLEVLNSTLPEFGVDSK---SLVLRDGSGISHIDAVSSDQLSQLLY 366 (462)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHGGGGTCCGG---GCBCSCSSSCCTTCBBCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC---CEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999843872999999999999737998668899999999997278866---52775588787556529999999999
Q ss_pred HCCC
Q ss_conf 0157
Q gi|254780752|r 590 VFAN 593 (817)
Q Consensus 590 ~~AN 593 (817)
.+..
T Consensus 367 ~~~~ 370 (462)
T 1w5d_A 367 DIQD 370 (462)
T ss_dssp HHTT
T ss_pred HHHH
T ss_conf 9885
No 65
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A*
Probab=70.59 E-value=4.3 Score=18.00 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=16.8
Q ss_pred EEHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0003776743220157440354
Q gi|254780752|r 578 ETTVLRMVSAYAVFANGGKQIR 599 (817)
Q Consensus 578 ~vtpl~la~aya~~AN~G~~~~ 599 (817)
-.|+-+|+.-...+.|+|....
T Consensus 226 ~st~~Dla~~~~~~l~~~~~~~ 247 (371)
T 2wzx_A 226 KTSAADLLRFVDANLHPERLDR 247 (371)
T ss_dssp EEEHHHHHHHHHHHHCGGGSCH
T ss_pred EECHHHHHHHHHHHHCCCCCCH
T ss_conf 1179999999999838998887
No 66
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens}
Probab=68.57 E-value=4.7 Score=17.72 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=14.2
Q ss_pred EEHHHHHHHHHHHCCCCCEEE
Q ss_conf 000377674322015744035
Q gi|254780752|r 578 ETTVLRMVSAYAVFANGGKQI 598 (817)
Q Consensus 578 ~vtpl~la~aya~~AN~G~~~ 598 (817)
-.|+.+|+.-...+.|+|...
T Consensus 221 ~st~~Dl~~~~~~ll~~~~~~ 241 (358)
T 2qz6_A 221 KTSTSDLIHYVEVNMHPAKLE 241 (358)
T ss_dssp EECHHHHHHHHHHHHCGGGSC
T ss_pred CCCHHHHHHHHHHHHCCCCCC
T ss_conf 158999999999985899776
No 67
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Probab=57.60 E-value=7 Score=16.61 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=40.4
Q ss_pred CEEEEECCCCCCCEEEEEC-CCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCCCEEEEECCCCEE
Q ss_conf 1166406566661178721-3234443-320012335665310000127887---402-466544565237880378526
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGG-FSYSQSE-FNRSTQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMDAPIEVVSRGKIW 514 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg-~d~~~~~-~NrA~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D~p~~~~~~~~~~ 514 (817)
|+.|+|. +.|.|.....| .|...+. .+ .....+.||.=|+|+-.+++ |+| +.+.+.+.+ |
T Consensus 25 G~~v~v~-~~g~i~~~~~G~ad~~~~~p~t--~dT~f~i~SvsK~~ta~~i~~Lv~~G~l~ldd~v~~-----------y 90 (349)
T 1yqs_A 25 GAMVRVD-DNGTIHQLSEGVADRATGRAIT--TTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVNT-----------Y 90 (349)
T ss_dssp EEEEEEE-ETTEEEEEEEEBSCTTTCCBCC--TTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHHH-----------H
T ss_pred EEEEEEE-ECCEEEEEEEEEEECCCCCCCC--CCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCCC-----------C
T ss_conf 7999999-8999999837886167798899--999796304799999999999998799998882100-----------2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCHH
Q ss_conf 66412765442256666665304402
Q gi|254780752|r 515 KPENYSKNFSGASTLRFGLEKSRNLM 540 (817)
Q Consensus 515 ~p~N~~~~~~G~itl~~Al~~S~N~~ 540 (817)
-|.-. ....||+|+-|.+++=++
T Consensus 91 lp~~~---~~~~iTi~~LL~HtSGl~ 113 (349)
T 1yqs_A 91 LPGLL---PDDRITVRQVMSHRSGLY 113 (349)
T ss_dssp STTCS---SCTTCBHHHHHTTCSCCC
T ss_pred CCCCC---CCCCCCHHHHHHCCCCCC
T ss_conf 88768---888665999821647898
No 68
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis}
Probab=52.90 E-value=8.9 Score=15.92 Aligned_cols=135 Identities=18% Similarity=0.157 Sum_probs=58.9
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHCC-CCCCCCCCCCEEEEEC-----CC
Q ss_conf 1166406566661178721323444332001233566531000012788---7402-4665445652378803-----78
Q gi|254780752|r 441 GGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAA---LDSG-YTPASVIMDAPIEVVS-----RG 511 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~vGg~d~~~~~~NrA~~~~rqpGSt~KP~vy~~A---le~G-~tp~t~~~D~p~~~~~-----~~ 511 (817)
++++|+ ..++|++--|- +....+.+|+=|+|+-+++ .|+| +.+.+.+....+++.. .|
T Consensus 15 ~~~~v~--~~~~~~~~~gd-----------~dt~f~iaS~tK~~ta~~i~~lve~G~l~Ld~pv~~~~iTlr~LLthtsG 81 (280)
T 3i7j_A 15 AAAAVI--GPAGVLATHGD-----------TARVFALASVTKPLVARAAQVAVEEGVVNLDTPAGPPGSTVRHLLAHTSG 81 (280)
T ss_dssp EEEEEE--ETTEEEEEESC-----------TTSCEECGGGHHHHHHHHHHHHHHHTSSCTTSBCSSTTCBHHHHHTTCSC
T ss_pred CCEEEE--CCCCEEEECCC-----------CCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 644898--39978811389-----------98889876059999999999999869988999788789879999548688
Q ss_pred -------CEEEEE---ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCEEH
Q ss_conf -------526664---127654422566666653044022588762597235211013556555-676656344510000
Q gi|254780752|r 512 -------KIWKPE---NYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIYDK-MLPVLPMSLGAGETT 580 (817)
Q Consensus 512 -------~~~~p~---N~~~~~~G~itl~~Al~~S~N~~~v~l~~~~G~~~~~~~~~~~Gi~~~-~~~~~s~alG~~~vt 580 (817)
..+.|- .|++ .|..-|...+++-.+.++-.++++ +.++.+|+.+- ..+.+..+-+..-.|
T Consensus 82 l~~~~~~~~~~PGt~~~Ysn--~~~~lLg~ile~vtG~~~~~~~~e-------~I~~PLGm~~t~~~~~p~~~~~G~~st 152 (280)
T 3i7j_A 82 LAMHSDQALARPGTRRMYSN--YGFTVLAESVQRESGIEFGRYLTE-------AVCEPLGMVTTRLDGGPAAAGFGATST 152 (280)
T ss_dssp BCSSSSCBCSCTTTCCCCCH--HHHHHHHHHHHHHHTSCHHHHHHH-------HTHHHHTCTTCEECSGGGGTTTCEEEC
T ss_pred CCCCCCCCCCCCCCEEEECC--HHHHHHHHHHHHHCCCCHHHHHHH-------HHHHHCCCCCEECCCCHHHCCCCCCCC
T ss_conf 87566762149896457775--769999998874338627889999-------999752897624158833146774332
Q ss_pred HHHHHHHHHHCCCCCEE
Q ss_conf 37767432201574403
Q gi|254780752|r 581 VLRMVSAYAVFANGGKQ 597 (817)
Q Consensus 581 pl~la~aya~~AN~G~~ 597 (817)
+-+|+.-...+.++|..
T Consensus 153 ~~D~~~~~~~ll~~g~~ 169 (280)
T 3i7j_A 153 VADLAVFAGDLLRPSTV 169 (280)
T ss_dssp HHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 77999999998488777
No 69
>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ...
Probab=52.56 E-value=9 Score=15.89 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=17.2
Q ss_pred CCCCCCCCCCHHHHHHHHH---HCC-CCCCCCC
Q ss_conf 2335665310000127887---402-4665445
Q gi|254780752|r 472 QAMRQPGSCFKPIVYAAAL---DSG-YTPASVI 500 (817)
Q Consensus 472 ~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~ 500 (817)
+.....||.=|+|+.++.+ |+| +++.+.+
T Consensus 54 ~T~f~iaS~tK~~ta~~i~~lve~G~l~ld~pv 86 (358)
T 2ffy_A 54 QTLFELGSVSKTFTGVLGGDAIARGEIKLSDPT 86 (358)
T ss_dssp TCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBH
T ss_pred CCEEECHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 997963226899999999999976999987864
No 70
>2k77_A Negative regulator of genetic competence CLPC/MECB; HSP100/CLP/AAA+, N-domain, repeat, N-CLPCR, chaperone/protease, chaperone; NMR {Bacillus subtilis}
Probab=51.37 E-value=8.5 Score=16.04 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9788854543321---4611338737999999999986
Q gi|254780752|r 80 PSHVKYAFVSAED---KNFYYHSGVDIFGIMRAVLHNI 114 (817)
Q Consensus 80 p~~l~~A~iA~ED---~rFy~H~GvD~~gi~RA~~~ni 114 (817)
|+|+.-|++..|| .+++++.|+|+..+.+++-..+
T Consensus 32 ~eHLL~all~~~~~~~~~iL~~~gid~~~l~~~l~~~l 69 (146)
T 2k77_A 32 TEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 69 (146)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999853663699999990998999999999986
No 71
>3ozh_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; 1.91A {Yersinia pestis}
Probab=44.94 E-value=12 Score=15.12 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=19.4
Q ss_pred CCCCE--EHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 45100--0037767432201574403544
Q gi|254780752|r 574 LGAGE--TTVLRMVSAYAVFANGGKQIRP 600 (817)
Q Consensus 574 lG~~~--vtpl~la~aya~~AN~G~~~~P 600 (817)
.|+++ .|+-+||.-...+-|+|.+...
T Consensus 224 ~~agg~~st~~Dla~f~~~~l~~g~~~~~ 252 (351)
T 3ozh_A 224 AGSGGIYSTPEDMQHWMQQFLASDNSAPK 252 (351)
T ss_dssp TTTTCCEECHHHHHHHHHTTSCBTTBCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCH
T ss_conf 68655427899999999999569998713
No 72
>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes}
Probab=41.72 E-value=13 Score=14.80 Aligned_cols=76 Identities=13% Similarity=0.028 Sum_probs=34.2
Q ss_pred CCCCCEEEE-ECCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHH---HHCC-CCCCCCCCCCEEEEECCCCEEEEEECCCC
Q ss_conf 666611787-213234443-32001233566531000012788---7402-46654456523788037852666412765
Q gi|254780752|r 449 RTGRILATI-GGFSYSQSE-FNRSTQAMRQPGSCFKPIVYAAA---LDSG-YTPASVIMDAPIEVVSRGKIWKPENYSKN 522 (817)
Q Consensus 449 ~TG~IlA~v-Gg~d~~~~~-~NrA~~~~rqpGSt~KP~vy~~A---le~G-~tp~t~~~D~p~~~~~~~~~~~p~N~~~~ 522 (817)
+.|+|+.-. |..|..... .+ .+...+.||.=|+|+..+. .|+| +.+.+.+.+ |-|. +...
T Consensus 35 ~~g~~~~~~~G~~d~~~~~~~t--~~t~f~iaSiSK~~ta~~i~~lve~G~l~ldd~v~~-----------ylP~-~~~~ 100 (359)
T 1zkj_A 35 KDGKAHYFNYGVANRESGAGVS--EQTLFEIGSVSKTLTATLGAYAVVKGAMQLDDKASR-----------HAPW-LKGS 100 (359)
T ss_dssp ETTEEEEEEEEBSCTTTCCBCC--TTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG-----------GCGG-GTTS
T ss_pred ECCEEEEEEEEECCCCCCCCCC--CCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCC-----------CCCC-CCCC
T ss_conf 9999999856202156699899--999896323799999999999997699774332223-----------4776-5444
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 4422566666653044
Q gi|254780752|r 523 FSGASTLRFGLEKSRN 538 (817)
Q Consensus 523 ~~G~itl~~Al~~S~N 538 (817)
....||+++-|.+.+-
T Consensus 101 ~~~~ITi~~LLsHtSG 116 (359)
T 1zkj_A 101 AFDSITMGELATYSAG 116 (359)
T ss_dssp GGGSSBHHHHHTTCSS
T ss_pred CCCCEEHHHHHHHCCC
T ss_conf 4565205655423249
No 73
>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A*
Probab=37.50 E-value=15 Score=14.37 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=14.0
Q ss_pred CCCCCCCCCCHHHHHHHHH---HCC-CCCCC
Q ss_conf 2335665310000127887---402-46654
Q gi|254780752|r 472 QAMRQPGSCFKPIVYAAAL---DSG-YTPAS 498 (817)
Q Consensus 472 ~~~rqpGSt~KP~vy~~Al---e~G-~tp~t 498 (817)
+.....||.=|+|+.++.+ |+| +.+.+
T Consensus 53 dT~f~i~SvtK~~ta~~v~~Lve~G~l~Ld~ 83 (363)
T 2drw_A 53 DHLFRIASCTKSFIATGLHLLVQDGTVDLDE 83 (363)
T ss_dssp TCBEECGGGHHHHHHHHHHHHHHTTSCCTTS
T ss_pred CCEEECEEHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9979630378999999999999879988888
No 74
>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A
Probab=35.76 E-value=16 Score=14.19 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCCEEEEECCCCCCCEE--EEECCCCCCCCC-CC---CCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCCC-EEEE
Q ss_conf 53116640656666117--872132344433-20---012335665310000127887---402-4665445652-3788
Q gi|254780752|r 439 VQGGLIAMDPRTGRILA--TIGGFSYSQSEF-NR---STQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMDA-PIEV 507 (817)
Q Consensus 439 ~q~a~V~id~~TG~IlA--~vGg~d~~~~~~-Nr---A~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D~-p~~~ 507 (817)
+-|++|++-.+.|+|+- -.|-.|+....- ++ ..+.....+|.=|+|+.++++ |+| +...+.+.+- | .|
T Consensus 49 iPG~~v~v~~~~G~vvy~~~~G~~~~~~~~~~~~~Pvt~dT~f~iaSiTK~~Ta~ai~~Lve~G~L~LddpV~~ylP-ef 127 (432)
T 3hlc_A 49 IPGAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMVLQCMERGLVDLDETVDRLLP-DL 127 (432)
T ss_dssp CSEEEEEEEESSSSCEEEEEEEBSCSSCCTTSCCCBCCTTCCEECGGGHHHHHHHHHHHHHHTTSCCTTSBTTTTCH-HH
T ss_pred CCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCH-HH
T ss_conf 99669999946997999874621444566544689999999796102379999999999998699888870312280-44
Q ss_pred ECCCCEEEEEECC-------CCCCCHHHHHHHHHHHCCHH
Q ss_conf 0378526664127-------65442256666665304402
Q gi|254780752|r 508 VSRGKIWKPENYS-------KNFSGASTLRFGLEKSRNLM 540 (817)
Q Consensus 508 ~~~~~~~~p~N~~-------~~~~G~itl~~Al~~S~N~~ 540 (817)
.. ...+ .+++ ......||+|+-|.+++=.+
T Consensus 128 ~~-~~~~--~~~~~~~~~~~~~~~~~ITlr~LLsHtSGl~ 164 (432)
T 3hlc_A 128 SA-MPVL--EGFDDAGNARLRERRGKITLRHLLTHTSGLS 164 (432)
T ss_dssp HT-CCEE--EEECTTCCEEEECCSSCCBHHHHHTTCSSCC
T ss_pred HC-CCCC--CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 05-7522--3665555544655568986999718988997
No 75
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=34.23 E-value=17 Score=14.03 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.5
Q ss_pred EEEEECCCCCCCEEEEECCCC
Q ss_conf 166406566661178721323
Q gi|254780752|r 442 GLIAMDPRTGRILATIGGFSY 462 (817)
Q Consensus 442 a~V~id~~TG~IlA~vGg~d~ 462 (817)
.++++||.||+++...|+.+.
T Consensus 104 ~i~~idP~tGe~i~~~~~~~~ 124 (153)
T 2dlx_A 104 YVSILDPRTGQKLVEWHQLDV 124 (153)
T ss_dssp EEEEECTTTCCCCEEESSCCH
T ss_pred EEEEEECCCCCEEEEECCCCH
T ss_conf 799994899948777567899
No 76
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=32.38 E-value=17 Score=14.09 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 97888545433214---611338737999999999986
Q gi|254780752|r 80 PSHVKYAFVSAEDK---NFYYHSGVDIFGIMRAVLHNI 114 (817)
Q Consensus 80 p~~l~~A~iA~ED~---rFy~H~GvD~~gi~RA~~~ni 114 (817)
|+|+.-|++.-+|. ++++..|+|+..+.+.+-..+
T Consensus 31 ~eHlL~all~~~~~~~~~il~~~gvd~~~l~~~l~~~l 68 (148)
T 1khy_A 31 PLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQAL 68 (148)
T ss_dssp HHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999838996299999991998999999999998
No 77
>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A*
Probab=31.39 E-value=19 Score=13.73 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=42.0
Q ss_pred CEEEEECCCCCCCEEEE--ECCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCCCEEEEECCCCE
Q ss_conf 11664065666611787--21323444-3320012335665310000127887---402-46654456523788037852
Q gi|254780752|r 441 GGLIAMDPRTGRILATI--GGFSYSQS-EFNRSTQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMDAPIEVVSRGKI 513 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~v--Gg~d~~~~-~~NrA~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D~p~~~~~~~~~ 513 (817)
|+.|+|- +.|+|+.-- |-.|.... ..+ .+.....+|.=|+|+.++++ |+| +...+.+.+- ++.
T Consensus 37 G~~v~V~-~~G~~v~~~~~G~ad~~~~~p~t--~~T~f~iaSvtK~~ta~~i~~Lve~G~l~ldd~v~~y---lPe---- 106 (392)
T 1ci9_A 37 GAVAIVA-RHGEILYRRAQGLADREAGRPMR--EDTLFRLASVTKPIVALAVLRLVARGELALDAPVTRW---LPE---- 106 (392)
T ss_dssp EEEEEEE-ETTEEEEEEEEEEEETTTTEECC--TTCBEECGGGHHHHHHHHHHHHHHHTSSCTTSBGGGT---CTT----
T ss_pred EEEEEEE-ECCEEEEEEEEEEECCCCCCCCC--CCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCC----
T ss_conf 4999999-99999999847651445599899--9987971317999999999999977986677741136---885----
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 6664127654422566666653044022
Q gi|254780752|r 514 WKPENYSKNFSGASTLRFGLEKSRNLMT 541 (817)
Q Consensus 514 ~~p~N~~~~~~G~itl~~Al~~S~N~~~ 541 (817)
+...+.++ ....||+|+-|.+++-++.
T Consensus 107 ~~~~~~~~-~~~~ITir~LL~htSGl~~ 133 (392)
T 1ci9_A 107 FRPRLADG-SEPLVTIHHLLTHTSGLGY 133 (392)
T ss_dssp CCCBCTTS-CCCCCBHHHHHHTCSSCCC
T ss_pred CCCCCCCC-CCCCEEHHHHHCCCCCCCC
T ss_conf 22235678-8786289997317357876
No 78
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=24.47 E-value=13 Score=14.84 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 6607999999972014267433109999998735423440302712544401576433211111
Q gi|254780752|r 160 KAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKN 223 (817)
Q Consensus 160 ~~~sK~eILe~YLN~v~~G~~~yGv~aAA~~YF~K~~~dLtl~EaA~LAgi~~~Ps~y~P~~np 223 (817)
..-.++++++.|+..|+ .-|..|.++...--.|-|.++| |++++=..|+|-++-
T Consensus 26 d~~A~~~Li~~~~~lv~---------~ia~~~~~~~~~~eDL~Qeg~i-gL~~A~~~fdp~~g~ 79 (243)
T 1l0o_C 26 DQEARDEIIEKNMRLVW---------SVVQRFLNRGYEADDLFQIGCI-GLLKSVDKFDLSYDV 79 (243)
T ss_dssp ----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHH---------HHHHHCCCCCCCHHHHHHHHHH-HHHHHHHHCCCCCCC
T ss_conf 89999999998699999---------9998756899999999837999-999999864951387
No 79
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.73 E-value=6.2 Score=16.94 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=37.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCHH--HCCCCCEEEEEEECCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 2674331099999987354234--403027125444015764332111---11466789988876665420111256
Q gi|254780752|r 176 FFGFNSYGIASAALTYFNKSVS--ELTIEEAAYLAALPKGPSNYDPFR---KNKAAIARRNWVIDRMEENGYISQEQ 247 (817)
Q Consensus 176 ~~G~~~yGv~aAA~~YF~K~~~--dLtl~EaA~LAgi~~~Ps~y~P~~---np~~a~~Rr~~VL~~M~~~g~It~~e 247 (817)
+||.-..-+.-+-+.+|++.++ .||.+|..+|..|...|...++-. .......--..++++|.+.|||....
T Consensus 10 ~~~~ll~~~~r~~~~~~~~~l~~~glt~~q~~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~~glI~r~~ 86 (146)
T 2fbh_A 10 YFGTLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 99999999999999999999988598999999999998679999999999998968989999999996398778636
No 80
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=23.63 E-value=7.2 Score=16.51 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=29.1
Q ss_pred HCCCCCEEEEEEECCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 403027125444015764332111---114667899888766654201112568
Q gi|254780752|r 198 ELTIEEAAYLAALPKGPSNYDPFR---KNKAAIARRNWVIDRMEENGYISQEQA 248 (817)
Q Consensus 198 dLtl~EaA~LAgi~~~Ps~y~P~~---np~~a~~Rr~~VL~~M~~~g~It~~e~ 248 (817)
+||.+|..+|.-|-..+...++-. .....+.--..++++|.+.|||..+.-
T Consensus 50 gLt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~~GlI~r~~~ 103 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTC 103 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 989999999999997698979999999979899899999999985898886131
No 81
>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi}
Probab=22.93 E-value=27 Score=12.75 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=43.6
Q ss_pred CEEEEECCCCCCCEEE--EECCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHH---HCC-CCCCCCCCCCEEEEECCCCE
Q ss_conf 1166406566661178--7213234443-320012335665310000127887---402-46654456523788037852
Q gi|254780752|r 441 GGLIAMDPRTGRILAT--IGGFSYSQSE-FNRSTQAMRQPGSCFKPIVYAAAL---DSG-YTPASVIMDAPIEVVSRGKI 513 (817)
Q Consensus 441 ~a~V~id~~TG~IlA~--vGg~d~~~~~-~NrA~~~~rqpGSt~KP~vy~~Al---e~G-~tp~t~~~D~p~~~~~~~~~ 513 (817)
|+.|+| .+.|+|+-- .|-.|..... .+ .+...+.||+=|+|+.++++ |+| +...+.+.+
T Consensus 21 G~sv~V-~~~g~~v~~~~~G~ad~~~~~p~~--~dT~f~i~SvSK~fTa~~i~~Lve~G~l~lddpv~~----------- 86 (447)
T 2qmi_A 21 GISISI-IKDGDVVYAKGFGYRNVEARLPST--PETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEK----------- 86 (447)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEETTTTEECC--SSCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBGGG-----------
T ss_pred EEEEEE-EECCEEEEEEEEEEECCCCCCCCC--CCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCHHH-----------
T ss_conf 799999-999999999857750467799899--999796700899999999999998699998780889-----------
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf 6664127654422566666653044022
Q gi|254780752|r 514 WKPENYSKNFSGASTLRFGLEKSRNLMT 541 (817)
Q Consensus 514 ~~p~N~~~~~~G~itl~~Al~~S~N~~~ 541 (817)
|-|.. .......||+++.|.+++=++.
T Consensus 87 ylP~~-~~~~~~~iTi~~LLtHtSGl~~ 113 (447)
T 2qmi_A 87 FVNIK-LRPFGEPVTVHHLLTHSSGIPS 113 (447)
T ss_dssp TSSSC-CCGGGCCCBHHHHHTTCSSCCB
T ss_pred HCCCC-CCCCCCCCCHHHHCCCCCCCCC
T ss_conf 68522-3788898589997017679987
No 82
>1rqt_A L8, 50S ribosomal protein L7/L12; protein L7/L12,ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1
Probab=21.18 E-value=29 Score=12.52 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.4
Q ss_pred HCHHHHHHHHHH
Q ss_conf 079999999720
Q gi|254780752|r 162 YDKEKILEFYLN 173 (817)
Q Consensus 162 ~sK~eILe~YLN 173 (817)
.||||||+.--+
T Consensus 2 ~tke~ILeaia~ 13 (37)
T 1rqt_A 2 ITKDQIIEAVAA 13 (37)
T ss_dssp CCHHHHHHHHTT
T ss_pred CCHHHHHHHHHH
T ss_conf 868999999988
No 83
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Probab=20.57 E-value=30 Score=12.43 Aligned_cols=25 Identities=28% Similarity=0.664 Sum_probs=20.5
Q ss_pred ECCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf 2255531166406566661178721
Q gi|254780752|r 435 QIPKVQGGLIAMDPRTGRILATIGG 459 (817)
Q Consensus 435 ~~p~~q~a~V~id~~TG~IlA~vGg 459 (817)
..|..++-+++.|+.||+.+|++-|
T Consensus 87 glP~~~g~v~L~d~~tG~p~a~~dg 111 (312)
T 2i99_A 87 VVPSHQATVLLFEPSNGTLLAVMDG 111 (312)
T ss_dssp CSSSEEEEEEEECTTTCCEEEEEEC
T ss_pred CCCCEEEEEEEEECCCCCEEEEECC
T ss_conf 8874359999998899968999805
No 84
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=20.49 E-value=30 Score=12.42 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 8887666542011125688875301
Q gi|254780752|r 231 NWVIDRMEENGYISQEQALVAKQKP 255 (817)
Q Consensus 231 ~~VL~~M~~~g~It~~e~~~a~~~~ 255 (817)
+.||+.|++.|.||+++++.-...+
T Consensus 30 ~~vld~L~~~~vlt~~e~e~I~~~~ 54 (98)
T 2nz7_A 30 QCLVDNLLKNDYFSAEDAEIVCACP 54 (98)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 9999999887996999999998189
Done!