PSIBLAST alignment of GI: 254780752 and protein with PDB id: 2fff
>gi|110591396|pdb|2FFF|B Chain B, Open Form Of A Class A Transpeptidase Domain Length = 453
Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats.
Identities = 83/349 (23%), Positives = 135/349 (38%), Gaps = 51/349 (14%)
Query: 438 KVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYA-AALDSGYTP 496
+V+ G + MD +TG IL +GG +Y +++ N + R P S KP++ A+D G
Sbjct: 83 RVEVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMG 142
Query: 497 ASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNL---MTVRLAHNMGMTVV 553
+ I+ + G + +G TL L S N+ T R+ G+ V
Sbjct: 143 SETILSNYPTNFANGNP--IMYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVD-V 199
Query: 554 ADYAENFGIYDKMLPVLPMSLGAG-ETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRYGK 612
Y E G + + +G G E TV + + Y AN G + I +I+ G+
Sbjct: 200 KGYMEKMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLANNGVYHQKHVISKIEAADGR 259
Query: 613 TIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGV----IKHGTAT 668
++ + DK QV TA + +L V + +
Sbjct: 260 VVYEYQ---------------------DKPVQVYSKATATIMQGLLREVLSSRVTTTFKS 298
Query: 669 GKVRLNRPVA-----GKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLT 723
LN +A GKTGTT+ + W + TP L +G ++G+D L+ A S
Sbjct: 299 NLTSLNPTLANADWIGKTGTTNQDENMWLMLSTPRLTLGGWIGHDDNHSLSRRAGYSNN- 357
Query: 724 APIFNAFM----KEALKNIP----SSRFVAPPGMSLIPINKWTGMLSKK 764
+ +M + P + RF P + + K TG K
Sbjct: 358 ----SNYMAHLVNAIQQASPSIWGNERFALDPSVVKSEVLKSTGQKPGK 402