RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780752|ref|YP_003065165.1| penicillin binding
peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
(817 letters)
>gnl|CDD|34614 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein
[Cell envelope biogenesis, outer membrane].
Length = 797
Score = 972 bits (2515), Expect = 0.0
Identities = 403/819 (49%), Positives = 522/819 (63%), Gaps = 28/819 (3%)
Query: 5 IVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNGALMA 64
++ I Y G IL + IS +LPD L P V TR+++ +G L+A
Sbjct: 1 MMKLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVETLKDVEPPVPTRVYSADGKLIA 60
Query: 65 EYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPE 124
EY E R+ +PI IP + AF++AEDK FY H GVD GI RA N+ N G R +
Sbjct: 61 EYGEERRIPVPIDDIPDRLINAFLAAEDKRFYEHHGVDPIGIFRAAFVNLTN---GGRSQ 117
Query: 125 GASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGI 184
GASTITQQVAKNF L+S +T++RKIKE LL+ R+E++ K++ILE YLN+I+ G+ +YG+
Sbjct: 118 GASTITQQVAKNFFLSSERTLERKIKEALLAIRIEQSLSKDEILELYLNKIYLGYRAYGV 177
Query: 185 ASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYIS 244
A+AA TYF KSV+ELT+ EAA LA LPK PSNY+P + A RRN+V++RM E GYI+
Sbjct: 178 AAAAQTYFGKSVNELTLAEAAMLAGLPKAPSNYNPLYNPERAKERRNYVLNRMLEEGYIT 237
Query: 245 QEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTSLDPQ 304
QEQA AK +PL F + YFAE VR+++I RYGE+A Y G S+ T+LD +
Sbjct: 238 QEQADEAKAEPLVAK-YHGPEIAFSAPYFAEMVRQEMIRRYGEEAAYTGGYSVYTTLDLK 296
Query: 305 LQLYARKALQNGLINYDQNDGFRGPIKRIDLKK-DWGNTLASIPTLYDVPEWDIAVVLEV 363
LQ A+KAL+NGL++YD+ G+RGP I+L DW + LA TL DV E AVVL V
Sbjct: 297 LQKAAQKALRNGLLDYDRRHGYRGPEAHIELSGEDWWDELAISDTLSDVGELLPAVVLSV 356
Query: 364 SNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIY 423
+ S IG+ K + ++MRW + + VL GDVIY
Sbjct: 357 AKSGAKIGLAD-----------GSKVTLSMEAMRWARRLLSDNKSPED---VLKPGDVIY 402
Query: 424 VEHINEG-WRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFK 482
V G WRLRQIP+V G L+++DP+TG ILA +GGFS++QS+FNR+TQA+RQPGS FK
Sbjct: 403 VRKNGGGGWRLRQIPEVNGALVSLDPKTGAILALVGGFSFAQSKFNRATQALRQPGSSFK 462
Query: 483 PIVYAAALDSGYTPASVIMDAPIEVVSRG--KIWKPENYSKNFSGASTLRFGLEKSRNLM 540
P VY+AALD G TPASVI DAPI G +W+P+NY F+G TLR GLE+SRNL+
Sbjct: 463 PFVYSAALDKGLTPASVINDAPISFWDGGGGGVWRPKNYGGKFAGPITLRQGLEQSRNLV 522
Query: 541 TVRLAHNMGMTVVADYAENFGIY-DKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIR 599
VRL +G+ A+Y + FG Y D++ PVL M+LG+GETT L+M AYAVFANGGK++
Sbjct: 523 AVRLLDAVGVDYAAEYIKRFGFYTDELPPVLSMALGSGETTPLQMARAYAVFANGGKRVE 582
Query: 600 PSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLE 659
P FIDRI++R GK IF E R+C CN D N Q+E + D QV+DPMTAYQITSML
Sbjct: 583 PYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLADYAPQVIDPMTAYQITSMLR 642
Query: 660 GVIKHGTATGKVRLNRP-VAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHAT 718
GV++ GTA RL RP +AGKTGTT+ +D WF+GYTP LV GV+VG+D P L T
Sbjct: 643 GVVQRGTAARAGRLGRPDIAGKTGTTNDSKDAWFVGYTPDLVTGVWVGFDHPRSLGRGET 702
Query: 719 GSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGT 778
G L PI+ FMK ALK P FV PPG+ I I++ TG+L+ +G P TIIE F PGT
Sbjct: 703 GGKLALPIWIDFMKVALKGKPEKDFVPPPGIVSINIDRKTGLLANEGAPKTIIEYFIPGT 762
Query: 779 GPAETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY 817
P ET +V + ++ P AN N L+
Sbjct: 763 QPTETESVEGQRGFEIPDD---DVPNANA-SNGQILELF 797
>gnl|CDD|31087 COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding
protein) [Cell envelope biogenesis, outer membrane].
Length = 661
Score = 265 bits (678), Expect = 4e-71
Identities = 121/315 (38%), Positives = 180/315 (57%), Gaps = 6/315 (1%)
Query: 1 MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60
R+V I F + G +L + +A + L +P TT
Sbjct: 7 FDRRLVRVILLLGTFR--LLGGRLLAGFLVLALYVKLPILLDLLVPQTPKSTTIYDRDGK 64
Query: 61 ALMAEYAR-ENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISH 119
++ Y+ E+R ++P+ IP ++K A ++ ED+ FY H G+D GI RA L N N+S
Sbjct: 65 LILTLYSGEEHREWVPLDQIPPNLKQALIAIEDRRFYEHHGIDPKGIGRAALAN--NLSG 122
Query: 120 GRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGF 179
G +G STITQQ+AKN L++ +T+DRK KE +L+ LE Y K++ILE YLN+++FG
Sbjct: 123 GGVSQGGSTITQQLAKNLFLSNERTLDRKAKEAVLALWLEALYSKDEILEMYLNQVYFGR 182
Query: 180 NSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEE 239
+YG+ +AA YF K +LT+ +AA LA L K PS Y+P+R + A ARRN V+ RM E
Sbjct: 183 GAYGVEAAAQYYFGKPAKDLTLAQAALLAGLLKAPSLYNPYRPPEYARARRNLVLRRMVE 242
Query: 240 NGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRT 299
GYI+ E+ A +PL++ + + YF + VR++L + GE L GL + T
Sbjct: 243 QGYITAEEYDAALAEPLQVQQAKTVATS-PPPYFDDVVRQELAELLGESDLLTGGLKVYT 301
Query: 300 SLDPQLQLYARKALQ 314
+LDP+LQ A KA+Q
Sbjct: 302 TLDPELQEAAEKAVQ 316
Score = 252 bits (645), Expect = 2e-67
Identities = 120/318 (37%), Positives = 162/318 (50%), Gaps = 31/318 (9%)
Query: 433 LRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDS 492
L ++ VQ L+ +DP+TG + A +GG Y S FNR+TQA RQPGS FKP +Y AAL+
Sbjct: 320 LYKLRDVQAALVLIDPKTGAVRALVGGRDYQPSGFNRATQAKRQPGSTFKPFLYYAALEE 379
Query: 493 G-YTPASVIMDAPIEVVSRGKIWKPENYSKNFSGAS-TLRFGLEKSRNLMTVRLAHNMGM 550
G TP+++++DAP+ W P+NY + G S TLR L S N+ VRL +G+
Sbjct: 380 GKATPSTIVVDAPVTY----GNWSPKNYDGRYEGGSVTLREALATSLNIPAVRLLQKVGL 435
Query: 551 TVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPSFIDRIQNRY 610
V D A+ GI ++P ++LGA E + L M SAYA FANGG P FI ++ +
Sbjct: 436 DKVVDTAKKLGINSPLVPGPSLALGASEVSPLEMASAYATFANGGTYYPPHFIRKVTDAD 495
Query: 611 GKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIK-HGTATG 669
G N K ++VL P AY +T ML+GV+ GT
Sbjct: 496 GVLYDNP----------------------PKVKRVLSPQAAYLMTDMLQGVVTPTGTGAA 533
Query: 670 KVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNA 729
AGKTGTT+ RD WF+GYTP L V++G D TG + A I+
Sbjct: 534 AKLPGPYAAGKTGTTNDNRDAWFVGYTPQLTTAVWLGNDDNPL--TPLTGGSDAAAIWKE 591
Query: 730 FMKEALKNIPSSRFVAPP 747
FM +AL F
Sbjct: 592 FMGQALPGGLRVPFPFTD 609
>gnl|CDD|144490 pfam00912, Transgly, Transglycosylase. The penicillin-binding
proteins are bifunctional proteins consisting of
transglycosylase and transpeptidase in the N- and
C-terminus respectively. The transglycosylase domain
catalyses the polymerisation of murein glycan chains.
Length = 174
Score = 238 bits (610), Expect = 5e-63
Identities = 84/179 (46%), Positives = 116/179 (64%), Gaps = 6/179 (3%)
Query: 59 NGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNIS 118
+G L+A + ENR+++P+ IP H+ A V+ ED+ FY H GVD GI RA L N+R
Sbjct: 1 DGTLLATFGEENRVYVPLDEIPPHLINAVVAIEDRRFYSHPGVDPKGIARAALSNLR--- 57
Query: 119 HGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFG 178
G +G STITQQ+AKN + +T+ RK++E +L+ RLE+ Y K++ILE YLN ++FG
Sbjct: 58 SGGIVQGGSTITQQLAKNL---TERTLSRKLREAILALRLERRYSKDEILELYLNTVYFG 114
Query: 179 FNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRM 237
YG+ +AA YF K S+LT+ EAA LA L PS Y+P R + A RRN V+ RM
Sbjct: 115 GGIYGVEAAARAYFGKPPSDLTLAEAALLAGLLPAPSRYNPLRNPERAKKRRNLVLKRM 173
>gnl|CDD|34561 COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein
PbpC [Cell envelope biogenesis, outer membrane].
Length = 733
Score = 164 bits (417), Expect = 8e-41
Identities = 92/271 (33%), Positives = 135/271 (49%), Gaps = 24/271 (8%)
Query: 39 PDYAALNSYSPAVTTRIHAGNGALMAEYAREN---RLFLPIQIIPSHVKYAFVSAEDKNF 95
P YS V R +G L+ +A ++ R+ P++ + A ++ EDK F
Sbjct: 27 PPLVEARQYSRVVLDR----DGTLLRAFADKDGEWRIPTPLEEVSPQFIEALINYEDKRF 82
Query: 96 YYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLS 155
Y+H GVD ++RA + GR G ST+T QVA+ L +T+ KI++I +
Sbjct: 83 YWHPGVDPLALLRAAWQTLT---SGRVVSGGSTLTMQVAR-LLEPRPRTLGGKIRQIWRA 138
Query: 156 FRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPS 215
+LE K +ILE YLN +G N G+ +A+L YF K L++ EAA LA LP+ P
Sbjct: 139 IQLESRLSKREILELYLNRAPYGGNIEGVRAASLAYFGKEPKRLSLAEAALLAVLPQNPE 198
Query: 216 NYDPFRKNKAAIARRNWVIDRMEENGYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAE 275
P R +AA A RN V+ RM G S+E+A A+ +P+ +RR F + +FA
Sbjct: 199 RRRPDRNPEAAEAARNRVLTRMAVQGVWSEEEAKRARLEPV---PNRRRQLPFLAPHFAF 255
Query: 276 EVRRQLIDRYGEKALYEDGLSIRTSLDPQLQ 306
+ Q Y G I T+LD LQ
Sbjct: 256 RLLNQ----------YPKGDIIVTTLDANLQ 276
Score = 155 bits (393), Expect = 5e-38
Identities = 94/363 (25%), Positives = 142/363 (39%), Gaps = 45/363 (12%)
Query: 424 VEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGG---FSYSQSEFNRSTQAMRQPGSC 480
+E + R P+ ++ +D RT +LA +G F S+S +A+R PGS
Sbjct: 279 LEEQARDYASRLGPRNSAAVLVVDNRTMEVLAYVGSADFFDASRSGHIDMVRALRSPGST 338
Query: 481 FKPIVYAAALDSGYT-PASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNL 539
KP VY A D G P +++ D P R ++PEN+ NF G ++R L KS N+
Sbjct: 339 LKPFVYGLAFDQGLIHPETLLKDVPT----RFGDYRPENFDSNFHGPVSVREALIKSLNI 394
Query: 540 MTVRLAHNMGMTVVADYAENFGIYDKM----LPVLPMSLGAGETTVLRMVSAYAVFANGG 595
VRL +G A G++ + P L + LG T+ + YA AN G
Sbjct: 395 PAVRLLEAVGPPRFAARLRQAGVHLYLPEGAAPGLSLILGGAGITLEDLAQLYAALANQG 454
Query: 596 KQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655
K G + D+P +L P A+QI
Sbjct: 455 K-------------AGPLRDTLD---------------DDP---LTERTLLSPGAAWQIL 483
Query: 656 SMLEGVIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNN 715
+L V + G G + RP+A KTGT+ YRD W +G V+GV+VG
Sbjct: 484 DILSDVARPGLPNGALPSVRPIAWKTGTSYGYRDAWSVGVFGRYVLGVWVG-RFDGTPVP 542
Query: 716 HATGSTLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFK 775
+G AP+ + + PG+ + I G + ++
Sbjct: 543 GLSGVATAAPLLFQVN-NIIARSGRLAELPRPGLVQLNIICVPGGAATPDVDLLFLDGKY 601
Query: 776 PGT 778
P T
Sbjct: 602 PIT 604
>gnl|CDD|144486 pfam00905, Transpeptidase, Penicillin binding protein
transpeptidase domain. The active site serine is
conserved in all members of this family.
Length = 296
Score = 145 bits (368), Expect = 4e-35
Identities = 88/330 (26%), Positives = 130/330 (39%), Gaps = 72/330 (21%)
Query: 441 GGLIAMDPRTGRILATIGGFSYSQSE-----FNRSTQAMRQPGSCFKPIVYAAALDSG-Y 494
G + +DP+TG +LA G SY + NR+ Q + +PGS FK AALD+G
Sbjct: 1 GSAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALDNGIL 60
Query: 495 TPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVA 554
P D P V + ++++++ SG TLR LE S N +LA +G +
Sbjct: 61 KPEETFDDWPGLPVGG---YTIKDWNQDGSGTITLREALEYSSNWYFQQLALKLGKDKLR 117
Query: 555 DYAENFGIYDKMLPVLP-----------------MSLGAGETTV--LRMVSAYAVFANGG 595
DY + FG +K LP + G G T+ L+ AYA AN G
Sbjct: 118 DYLKKFGYGNKTGIGLPGESAGILPPRYRGDGATTAWGQGSLTITPLQQAQAYATIANNG 177
Query: 596 KQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQIT 655
K + P + I+ +P+++ K + TA ++
Sbjct: 178 KLVPPHIVKSIK------------------------KLVDPKVLGK--LPISKSTAEKVK 211
Query: 656 SMLEGVIKHGTATGKVRLNRPVAGKTGTTSSY---------RDTWFIGY----TPTLVVG 702
ML+ V+ G V VAGKTGT + WF+GY P
Sbjct: 212 DMLKLVVNDGGGAAAV-PGYKVAGKTGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFA 270
Query: 703 VYVGYDIPAPLNNHATGSTLTAPIFNAFMK 732
V I P + G + APIF ++
Sbjct: 271 VL----IDDPKGDGGAGGKVAAPIFKDILE 296
>gnl|CDD|31111 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 113 bits (285), Expect = 2e-25
Identities = 87/353 (24%), Positives = 132/353 (37%), Gaps = 85/353 (24%)
Query: 440 QGGLIAMDPRTGRILATIGGFSYSQSEF--------------NRSTQAMRQPGSCFKPIV 485
G + +DP+TG ILA SY + F NR+ +PGS FKPI
Sbjct: 267 GGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRKPLLNRAVTGTYEPGSTFKPIT 326
Query: 486 YAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGAS-TLRFGLEKSRNLMTVRL 544
AAAL++G T + + + KI ++ G TL L+KS N+ +L
Sbjct: 327 AAAALETGNT--GLFDPGSVLDGNGPKIRIWGRTGHDYGGRPLTLTEALQKSSNVGFAKL 384
Query: 545 AHNMGMTVVADYAENFGIYDKM---LPV-------------------LPMSLGAG-ETTV 581
A +G + DY + FG K LP +S+G G T
Sbjct: 385 ALRLGPDGLYDYLKKFGFGQKTGIDLPGETSGLLPSREPWRWGPIDLATLSIGQGLLVTP 444
Query: 582 LRMVSAYAVFANGGKQIRPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDK 641
L++ AYA ANGGK ++P + I++ G+++ E
Sbjct: 445 LQLAQAYATIANGGKLVKPHLVKGIEDP---------------------VGENKKEPPVL 483
Query: 642 REQVLDPMTAYQITSMLEGVIKHGTATGKVR---LNRPVAGKTGTTSSY----------- 687
+++V+ P TA ++ + V+ G +AGKTGT
Sbjct: 484 KKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGR 543
Query: 688 RDTWFIGYT----PTLVVGVYVGYDIPAPLNNHATGSTLTAPIFNAFMKEALK 736
WF+G+ P V V V G + AP+F M+ L
Sbjct: 544 YHAWFVGFAPADNPKYAVAVLV------DNPGGGYGGAVAAPVFKKIMERLLD 590
>gnl|CDD|30135 cd01637, IMPase_like, Inositol-monophosphatase-like domains. This
family of phosphatases is dependent on bivalent metal
ions such as Mg++, and many members are inhibited by Li+
(which is thought to displace a bivalent ion in the
active site). Substrates include
fructose-1,6-bisphosphate, inositol poly- and
monophosphates, PAP and PAPS,
sedoheptulose-1,7-bisphosphate and probably others..
Length = 238
Score = 31.5 bits (71), Expect = 1.0
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 96 YYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLS 155
Y G + G++ + + + R +GA +++ + D + + LLS
Sbjct: 101 LYEDGKPVLGVIYDPMLDEL--YYAGRGKGAFLNGKKLPL--------SKDTPLNDALLS 150
Query: 156 FRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTY 191
+ L G YG A L Y
Sbjct: 151 TNASMLRSNRAAVLASLVNRALGIRIYGSAGLDLAY 186
>gnl|CDD|36161 KOG0943, KOG0943, KOG0943, Predicted ubiquitin-protein
ligase/hyperplastic discs protein, HECT superfamily
[Posttranslational modification, protein turnover,
chaperones].
Length = 3015
Score = 30.9 bits (69), Expect = 1.5
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 410 SENRNVLS-------LGDVIYVEHINEGWRL--RQIPKVQGGLIAMDPRTGRILATIGGF 460
S +LS +G V + RL + + G +A + G IL + GF
Sbjct: 2362 SCGPELLSFRPQCSFMGKVFKHDMAIGNRRLFLDKFGEAFGADVAAEN--GIILRELAGF 2419
Query: 461 SYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMD 502
+ +FN++ + +R S K I LD P + D
Sbjct: 2420 ETKERKFNKAMEKLRNQHSNVKDIS----LDVDRDPDLLFQD 2457
>gnl|CDD|35333 KOG0110, KOG0110, KOG0110, RNA-binding protein (RRM superfamily)
[General function prediction only].
Length = 725
Score = 30.4 bits (68), Expect = 2.1
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 176 FFGFNSYGIASAALTYFNKS---VSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNW 232
F GF S A A+ YFNKS S +T+E P P + + K + ++
Sbjct: 13 FIGFKSEEEAQKAIKYFNKSFINTSRITVEFCKSFGD-PNKPRPWSKYAKKSSEPKKKE- 70
Query: 233 VIDRMEENGYISQEQALVAKQKPLK----ITIKQRRSHLFGS---EYFAEEVRRQLIDRY 285
+ E N +E+ A + + + + +R+S + + A ++ R+ D
Sbjct: 71 -KEEEEANIKKEKEKKKKALKDDPEFQEFLEVHRRQSTSWENDGKSKEASKLLREDEDSA 129
Query: 286 GEKALYEDGLSIRTSLDP 303
G+ + L S +P
Sbjct: 130 GKG----ESLEEEASKEP 143
>gnl|CDD|36196 KOG0978, KOG0978, KOG0978, E3 ubiquitin ligase involved in syntaxin
degradation [Posttranslational modification, protein
turnover, chaperones].
Length = 698
Score = 29.6 bits (66), Expect = 3.8
Identities = 25/170 (14%), Positives = 59/170 (34%), Gaps = 21/170 (12%)
Query: 139 LTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFNSYGIASAALTYF------ 192
T ++++++++ LEK + L +L E N+YG + +L+
Sbjct: 89 ETEVDELEQQLEDLQ--ADLEKIRRRSNKLNKHLAEALEHLNTYGNGNGSLSGTITVNST 146
Query: 193 -----NKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEENGYISQEQ 247
+ EL + + L K D I R+ R+E + +
Sbjct: 147 ELEELRDEIEELRELASTRMEELEKLQLYSD-------EILRQLDRF-RVELRSLKEKVR 198
Query: 248 ALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSI 297
+ + + L+ + +R + E + +L ++ + + L
Sbjct: 199 SETFELRCLQYNEELQRKTMESDEAINSKKVIKLEEKLAQCVKEYEMLRK 248
>gnl|CDD|144660 pfam01147, Crust_neurohorm, Crustacean CHH/MIH/GIH neurohormone
family.
Length = 73
Score = 29.1 bits (66), Expect = 4.7
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 607 QNRYGKTIFNQEQRICDDC 625
+ Y + +F + R+C+DC
Sbjct: 8 KGVYDRDLFKKLDRVCEDC 26
>gnl|CDD|36616 KOG1402, KOG1402, KOG1402, Ornithine aminotransferase [Amino acid
transport and metabolism].
Length = 427
Score = 28.7 bits (64), Expect = 5.9
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 540 MTVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGA-GETTVLRMVSAYAVFANGGKQI 598
++ R +N + A+Y YDK VLPM+ GA T ++ + +
Sbjct: 93 LSSRAFYNDVLGEFAEYVTKLFGYDK---VLPMNTGAEAVETACKLARKWGYRKKNIPKN 149
Query: 599 RPSFIDRIQNRYGKTIFNQEQRICDDCNYDTWNG 632
+ + N +G+T+ I + D+W+G
Sbjct: 150 KAKILSAENNFHGRTL----GAISLSTDPDSWDG 179
>gnl|CDD|147718 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 28.9 bits (64), Expect = 6.5
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 87 FVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHGRRPEGASTITQQVAKNFLLTSNQTMD 146
FVSA +N + H IM A+L + ++ ++ + ++++ L S +
Sbjct: 188 FVSAVKRNLFSHGSQKATDIMDAMLKKLYSVLFAKKVPEHVRKKEDKSESYSLISMKAGS 247
Query: 147 RKIKEILLSFRLEKAYDKEK 166
K L+F K+ K +
Sbjct: 248 GDPKCRNLNFASMKSEMKLR 267
>gnl|CDD|36584 KOG1370, KOG1370, KOG1370, S-adenosylhomocysteine hydrolase
[Coenzyme transport and metabolism].
Length = 434
Score = 28.4 bits (63), Expect = 7.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 184 IASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFR 221
+AS L +++LT ++A YL GP D +R
Sbjct: 396 VASLHLGKLGAKLTKLTDKQAKYLGLSKDGPFKPDHYR 433
>gnl|CDD|113237 pfam04458, DUF505, Protein of unknown function (DUF505). Family of
uncharacterized prokaryotic proteins.
Length = 591
Score = 28.7 bits (64), Expect = 7.5
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 184 IASAALTYFNKS--VSELTIEEAAYLAALPKGPSNYDPFRKNKAAI 227
A L + ++ +T E A Y+ +P GP D K+ +
Sbjct: 127 YGKAVLEIYRETHPKLYVTPEVAGYIRKMPPGPGELDELITYKSTL 172
>gnl|CDD|32877 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 28.4 bits (63), Expect = 8.9
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 444 IAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQ 476
+++ P G +L G F +Q + Q +
Sbjct: 96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128
>gnl|CDD|177079 CHL00174, accD, acetyl-CoA carboxylase beta subunit; Reviewed.
Length = 296
Score = 28.3 bits (64), Expect = 9.4
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 33/99 (33%)
Query: 608 NRYG---KTIFNQEQRICDDCNY----------------DTWNGQDE------P-EIIDK 641
N YG K + IC+ C Y TWN DE P E
Sbjct: 43 NCYGLNYKKFLKSKMNICEQCGYHLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSD 102
Query: 642 REQVLDPMTAYQI-TSMLEGVIKHGTATGKVRLNR-PVA 678
E D + +YQ T + + V T G+ LN PVA
Sbjct: 103 EEPYKDRIDSYQKKTGLTDAVQ---TGIGQ--LNGIPVA 136
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 10,016,867
Number of extensions: 550835
Number of successful extensions: 1404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 24
Length of query: 817
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 715
Effective length of database: 4,059,619
Effective search space: 2902627585
Effective search space used: 2902627585
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)