RPSBLAST alignment of GI: 254780752 and protein with PDBid: 1qme
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C* Length = 702
Score = 107 bits (268), Expect = 8e-24
Identities = 66/389 (16%), Positives = 114/389 (29%), Gaps = 61/389 (15%)
Query: 397 RWVYNKEQTTEETSENRNV-LSLG-DVIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRIL 454
V EQ ++ T + ++V ++ + ++ + +TG IL
Sbjct: 195 NIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEIL 254
Query: 455 ATIGGFSYSQSEF----------NRSTQAMRQPGSCFKPIVYAAALDSG-YTPASVIMDA 503
AT ++ + Q+ +PGS K ++ AAA+D+ + V +
Sbjct: 255 ATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSS 314
Query: 504 PIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGIY 563
+++ N T G S N+ L MG DY F
Sbjct: 315 ELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFG 374
Query: 564 DKM--------LPVLPMSL----------GAGETTVLRMVSAYAVFANGGKQIRPSFIDR 605
LP T +M+ A+ AN G + P FI
Sbjct: 375 VPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISA 434
Query: 606 IQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGVIKHG 665
I + +T ++ I P D M + + H
Sbjct: 435 IYDPNDQTARKSQKEIV-----------GNPVSKDAASLTRTNMVLVGTDPVYGTMYNHS 483
Query: 666 TATGKVRL-NRPVAGKTGTTSSYRD-------------TWFIGYTPTL--VVGVYVGYDI 709
T V + + VA K+GT + + +P +YV
Sbjct: 484 TGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQ 543
Query: 710 PAPLNNHATGSTLTAPIFN--AFMKEALK 736
P + PI + MK++L
Sbjct: 544 PEHYSG-IQLGEFANPILERASAMKDSLN 571