RPSBLAST alignment of GI: 254780752 and protein with PDBid: 1vqq

>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A* Length = 646

 Score =  113 bits (283), Expect = 2e-25
 Identities = 55/446 (12%), Positives = 112/446 (25%), Gaps = 71/446 (15%)

Query: 325 GFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVVLEVSNSHITIGIRPTIDSNGKVTT 384
           G+ GPI   +LK+           +       +            + I     +    T 
Sbjct: 232 GYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTL 291

Query: 385 ERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGDVIYVEHINEGWRLRQIPKVQGGLI 444
             KK     D         +  +    N                E   L   P       
Sbjct: 292 IEKKKKDGKDIQLT--IDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPF 349

Query: 445 AMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPA--SVIMD 502
                              +       Q    PGS  K +     L++       S  +D
Sbjct: 350 MYGMSNEEYNKL---TEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKID 406

Query: 503 APIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLMTVRLAHNMGMTVVADYAENFGI 562
                  +          +  +G   L+  +E S N+   R+A  +G        +  G+
Sbjct: 407 GKGWQKDKSWGGYNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGV 466

Query: 563 YDKM---------------------LPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRPS 601
            + +                     L       G      ++++S Y+   N G    P 
Sbjct: 467 GEDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPH 526

Query: 602 FIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEGV 661
            +   +N+  K                              + ++       +T  ++ V
Sbjct: 527 LLKDTKNKVWK------------------------------KNIISKENINLLTDGMQQV 556

Query: 662 IKHGTATGKVRLNRPVAGKTGT--------TSSYRDTWFIGYT---PTLVVGVYVGYDIP 710
           +         R    + GK+GT         +  +  WFI Y    P +++ + V     
Sbjct: 557 VNKTHKEDIYRSYANLIGKSGTAELKMKQGETGRQIGWFISYDKDNPNMMMAINV--KDV 614

Query: 711 APLNNHATGSTLTAPIFNAFMKEALK 736
                 +  + ++  +++   +   K
Sbjct: 615 QDKGMASYNAKISGKVYDELYENGNK 640