RPSBLAST alignment of GI: 254780752 and protein with PDBid: 2oqo
>2oqo_A Penicillin-binding protein 1A (PBP-1A) (PBP1A); transferase; HET: EPE CPS; 2.10A {Aquifex aeolicus VF5} SCOP: d.2.1.10 PDB: 3d3h_A* Length = 200
Score = 201 bits (513), Expect = 4e-52
Identities = 92/196 (46%), Positives = 128/196 (65%), Gaps = 3/196 (1%)
Query: 59 NGALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNIS 118
G L + R ++ I IP HV AFV+ ED+NF++H G+D I+RA + N R
Sbjct: 8 KGRLYGTIGIQKRFYVSIDKIPEHVINAFVATEDRNFWHHFGIDPVAIVRAAIVNYRAGR 67
Query: 119 HGRRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFG 178
+ G STITQQ+AKN LT +T++RKIKE LL+ ++E+ +DK+KI+E YLN+I+ G
Sbjct: 68 IVQ---GGSTITQQLAKNLFLTRERTLERKIKEALLAIKIERTFDKKKIMELYLNQIYLG 124
Query: 179 FNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRME 238
+YG+ +AA YF K V EL+++EAA LAALPK P+ Y+PF + A+ RRN V+ RM
Sbjct: 125 SGAYGVEAAAQVYFGKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRML 184
Query: 239 ENGYISQEQALVAKQK 254
E GYI+ EQ A K
Sbjct: 185 EEGYITPEQYEEAVNK 200