BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62] (817 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 817 Score = 1690 bits (4377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 817/817 (100%), Positives = 817/817 (100%) Query: 1 MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60 MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG Sbjct: 1 MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60 Query: 61 ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG 120 ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG Sbjct: 61 ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG 120 Query: 121 RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN 180 RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN Sbjct: 121 RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN 180 Query: 181 SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN 240 SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN Sbjct: 181 SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN 240 Query: 241 GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS 300 GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS Sbjct: 241 GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS 300 Query: 301 LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV 360 LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV Sbjct: 301 LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV 360 Query: 361 LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD 420 LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD Sbjct: 361 LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD 420 Query: 421 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC 480 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC Sbjct: 421 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC 480 Query: 481 FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM 540 FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM Sbjct: 481 FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM 540 Query: 541 TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP 600 TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP Sbjct: 541 TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP 600 Query: 601 SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG 660 SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG Sbjct: 601 SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG 660 Query: 661 VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS 720 VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS Sbjct: 661 VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS 720 Query: 721 TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP 780 TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP Sbjct: 721 TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP 780 Query: 781 AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY 817 AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY Sbjct: 781 AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY 817 >gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 598 Score = 38.9 bits (89), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 43/198 (21%) Query: 442 GLIAMDPRTGRILATIGGFSYSQSE---------FNRSTQAMRQPGSCFKPIVYAAALDS 492 G + ++ TG +++ + Y E FNR + + + GS FK A +DS Sbjct: 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344 Query: 493 GYTPASVIMDA--PIEVVSRGKI----WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAH 546 G + D PI+V GK + P+N + + R+ S N+ ++A Sbjct: 345 GLFTVKDLFDTRNPIKV---GKHVIHDYHPQN--RILTIPEIFRY----SSNIGAAQIAD 395 Query: 547 NMGMTVVADYAENFGIYDKMLPVLP------------------MSLGAG-ETTVLRMVSA 587 MG+ ++ G+ K+ LP +S G G TT L+ A Sbjct: 396 AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVA 455 Query: 588 YAVFANGGKQIRPSFIDR 605 A N G+ I P+F+ R Sbjct: 456 AAALINEGRLIPPTFMIR 473 >gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62] Length = 215 Score = 29.3 bits (64), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 10/69 (14%) Query: 2 YYRIVSFIGYFFGFATYSILGAILGAS-IYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60 + R + F+ +FF FAT +I+G L +S I I+ S++ D L + P + + Sbjct: 20 HVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSID---LLDFEPMIMKKF----- 71 Query: 61 ALMAEYARE 69 ++++Y+++ Sbjct: 72 -ILSDYSKD 79 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 25.8 bits (55), Expect = 2.6, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 24/44 (54%) Query: 551 TVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANG 594 + + D ++ ++ML +L +G+G+T V + A AV A G Sbjct: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322 >gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 323 Score = 24.6 bits (52), Expect = 5.7, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 461 SYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYS 520 SY+ S F R + + G Y +D ++I+ I + W+ E Y Sbjct: 179 SYALSLFERGCKLALENGLILVDSKYEFGIDKK---QNIILADEIHTPDSSRYWEVETYE 235 Query: 521 KNFSGASTLRFGLEKS--RNLMTVRL 544 K+F T GL+K RN + R Sbjct: 236 KSFREGIT-PIGLDKDFIRNWILTRC 260 >gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 24.6 bits (52), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 168 LEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAI 227 + +YLN IFF N + A+ L + E +A + K PS P RK I Sbjct: 153 IRYYLNGIFFHINEEDLKLCAVA---TDGHRLAVAEVDIVAQIAKMPSIIVP-RKAVGEI 208 Query: 228 AR 229 R Sbjct: 209 LR 210 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.394 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 519,762 Number of Sequences: 1233 Number of extensions: 22244 Number of successful extensions: 61 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 8 length of query: 817 length of database: 328,796 effective HSP length: 82 effective length of query: 735 effective length of database: 227,690 effective search space: 167352150 effective search space used: 167352150 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)