BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780752|ref|YP_003065165.1| penicillin binding
peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
         (817 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 817

 Score = 1690 bits (4377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/817 (100%), Positives = 817/817 (100%)

Query: 1   MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60
           MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG
Sbjct: 1   MYYRIVSFIGYFFGFATYSILGAILGASIYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60

Query: 61  ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG 120
           ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG
Sbjct: 61  ALMAEYARENRLFLPIQIIPSHVKYAFVSAEDKNFYYHSGVDIFGIMRAVLHNIRNISHG 120

Query: 121 RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN 180
           RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN
Sbjct: 121 RRPEGASTITQQVAKNFLLTSNQTMDRKIKEILLSFRLEKAYDKEKILEFYLNEIFFGFN 180

Query: 181 SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN 240
           SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN
Sbjct: 181 SYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAIARRNWVIDRMEEN 240

Query: 241 GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS 300
           GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS
Sbjct: 241 GYISQEQALVAKQKPLKITIKQRRSHLFGSEYFAEEVRRQLIDRYGEKALYEDGLSIRTS 300

Query: 301 LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV 360
           LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV
Sbjct: 301 LDPQLQLYARKALQNGLINYDQNDGFRGPIKRIDLKKDWGNTLASIPTLYDVPEWDIAVV 360

Query: 361 LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD 420
           LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD
Sbjct: 361 LEVSNSHITIGIRPTIDSNGKVTTERKKGIIEADSMRWVYNKEQTTEETSENRNVLSLGD 420

Query: 421 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC 480
           VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC
Sbjct: 421 VIYVEHINEGWRLRQIPKVQGGLIAMDPRTGRILATIGGFSYSQSEFNRSTQAMRQPGSC 480

Query: 481 FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM 540
           FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM
Sbjct: 481 FKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYSKNFSGASTLRFGLEKSRNLM 540

Query: 541 TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP 600
           TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP
Sbjct: 541 TVRLAHNMGMTVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANGGKQIRP 600

Query: 601 SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG 660
           SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG
Sbjct: 601 SFIDRIQNRYGKTIFNQEQRICDDCNYDTWNGQDEPEIIDKREQVLDPMTAYQITSMLEG 660

Query: 661 VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS 720
           VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS
Sbjct: 661 VIKHGTATGKVRLNRPVAGKTGTTSSYRDTWFIGYTPTLVVGVYVGYDIPAPLNNHATGS 720

Query: 721 TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP 780
           TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP
Sbjct: 721 TLTAPIFNAFMKEALKNIPSSRFVAPPGMSLIPINKWTGMLSKKGDPDTIIEAFKPGTGP 780

Query: 781 AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY 817
           AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY
Sbjct: 781 AETYTVIDEDSNVSSEEILRRSPQANQAINSGSGGLY 817


>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 598

 Score = 38.9 bits (89), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 43/198 (21%)

Query: 442 GLIAMDPRTGRILATIGGFSYSQSE---------FNRSTQAMRQPGSCFKPIVYAAALDS 492
           G + ++  TG +++ +    Y   E         FNR +  + + GS FK    A  +DS
Sbjct: 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344

Query: 493 GYTPASVIMDA--PIEVVSRGKI----WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAH 546
           G      + D   PI+V   GK     + P+N  +  +     R+    S N+   ++A 
Sbjct: 345 GLFTVKDLFDTRNPIKV---GKHVIHDYHPQN--RILTIPEIFRY----SSNIGAAQIAD 395

Query: 547 NMGMTVVADYAENFGIYDKMLPVLP------------------MSLGAG-ETTVLRMVSA 587
            MG+    ++    G+  K+   LP                  +S G G  TT L+   A
Sbjct: 396 AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVA 455

Query: 588 YAVFANGGKQIRPSFIDR 605
            A   N G+ I P+F+ R
Sbjct: 456 AAALINEGRLIPPTFMIR 473


>gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 215

 Score = 29.3 bits (64), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 10/69 (14%)

Query: 2  YYRIVSFIGYFFGFATYSILGAILGAS-IYIAKISQNLPDYAALNSYSPAVTTRIHAGNG 60
          + R + F+ +FF FAT +I+G  L +S I I+  S++  D   L  + P +  +      
Sbjct: 20 HVRFIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSID---LLDFEPMIMKKF----- 71

Query: 61 ALMAEYARE 69
           ++++Y+++
Sbjct: 72 -ILSDYSKD 79


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 25.8 bits (55), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 551 TVVADYAENFGIYDKMLPVLPMSLGAGETTVLRMVSAYAVFANG 594
           + + D  ++    ++ML +L   +G+G+T V  +  A AV A G
Sbjct: 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGG 322


>gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 323

 Score = 24.6 bits (52), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 461 SYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYS 520
           SY+ S F R  +   + G       Y   +D      ++I+   I      + W+ E Y 
Sbjct: 179 SYALSLFERGCKLALENGLILVDSKYEFGIDKK---QNIILADEIHTPDSSRYWEVETYE 235

Query: 521 KNFSGASTLRFGLEKS--RNLMTVRL 544
           K+F    T   GL+K   RN +  R 
Sbjct: 236 KSFREGIT-PIGLDKDFIRNWILTRC 260


>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 385

 Score = 24.6 bits (52), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 168 LEFYLNEIFFGFNSYGIASAALTYFNKSVSELTIEEAAYLAALPKGPSNYDPFRKNKAAI 227
           + +YLN IFF  N   +   A+         L + E   +A + K PS   P RK    I
Sbjct: 153 IRYYLNGIFFHINEEDLKLCAVA---TDGHRLAVAEVDIVAQIAKMPSIIVP-RKAVGEI 208

Query: 228 AR 229
            R
Sbjct: 209 LR 210


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,762
Number of Sequences: 1233
Number of extensions: 22244
Number of successful extensions: 61
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 8
length of query: 817
length of database: 328,796
effective HSP length: 82
effective length of query: 735
effective length of database: 227,690
effective search space: 167352150
effective search space used: 167352150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)