HHsearch alignment for GI: 254780753 and conserved domain: COG0216
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=898.47 Aligned_cols=337 Identities=38% Similarity=0.563 Sum_probs=320.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89999999999998708660025899999999998899999999999999863999998631000000234566765557
Q gi|254780753|r 16 WDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQRI 95 (355)
Q Consensus 16 le~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~l 95 (355)
T Consensus 9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~ 88 (363)
T COG0216 9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88 (363)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999998539633369999999999998888999999999999999999999983568878999999999999
Q ss_pred HHHHHHH----HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 7401589----988763034576624899821778702778999999989999877531134442054545850134688
Q gi|254780753|r 96 KLEVEYK----QFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLL 171 (355)
Q Consensus 96 ~~~le~L----E~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~ 171 (355)
T Consensus 89 ~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~ 168 (363)
T COG0216 89 EAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIAS 168 (363)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf 99899999999986289998877776899706888159999999999999999975798799941586667880489999
Q ss_pred EECCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 50556100000101206898730466665035668878850344222111234550369985388865544273100358
Q gi|254780753|r 172 IKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVR 251 (355)
Q Consensus 172 I~G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savr 251 (355)
T Consensus 169 I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAVR 248 (363)
T COG0216 169 ISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAVR 248 (363)
T ss_pred EECCCHHHHHHHCCCCCCEECCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHCEEEEEECCCCCCCCCCCCCHHHE
T ss_conf 84365455410315765221066655788314000168862787753346447788347655437898887665131101
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCEEEEECCCCCCCCCCCC
Q ss_conf 87469747766555552246799999999999999999999999999874133233---222101301585683311114
Q gi|254780753|r 252 ITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIG---WGRQIRSYVLQPYQMVKDLRT 328 (355)
Q Consensus 252 i~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~iRtY~~~p~~~v~DhR~ 328 (355)
T Consensus 249 iTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~--RksqVGSGDRSErIRTYNf-PQnRVTDHRI 325 (363)
T COG0216 249 ITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASE--RKSQVGSGDRSERIRTYNF-PQNRVTDHRI 325 (363)
T ss_pred EEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCHHHHHHCCCC-CCCCCCCHHC
T ss_conf 431477369984462456651999999999999999999999999988--8873377742542103578-8776510103
Q ss_pred CCEECCHHHHHCC-CHHHHHHHHHHCCC
Q ss_conf 7250797787189-77999999972259
Q gi|254780753|r 329 NIEKTSPSDVLDG-DLDDFMKATLAIKK 355 (355)
Q Consensus 329 ~~~~~~~~~vl~G-~ld~~i~a~l~~~~ 355 (355)
T Consensus 326 ~lTl~kLd~vm~gG~LDeii~aLi~~~q 353 (363)
T COG0216 326 NLTLYKLDEVMEGGKLDEIIDALIAEDQ 353 (363)
T ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 6610458888646857899999999999