HHsearch alignment of GI: 254780753 and MMDB domain: 1j26_A_
>1j26_A (A:) Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.84 E-value=9.6e-22 Score=175.71 Aligned_cols=83 Identities=23% Similarity=0.225 Sum_probs=77.5
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEE-------------------------CCCHHHH
Q ss_conf 878850344222111234550369985388865544273100358874-------------------------6974776
Q gi|254780753|r 207 SSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITH-------------------------IPTGVVV 261 (355)
Q Consensus 207 a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H-------------------------~ptgi~v 261 (355)
|+|.++|.+.+..++.|+++||+|.++|||||||||||||+|+|+|+| .|+||+|
T Consensus 1 a~~~~~~~~~~~~~~~Ip~~~l~~~~~RssGpGGQ~VNK~~skv~l~~~~~~~~~l~~~~~~~l~~~~~~r~~~~~~l~i 80 (112)
T 1j26_A 1 GSSGSSGEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80 (112)
T ss_dssp CCCCSCSSCCCSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEE
T ss_pred CCCCCCHHHHHHHCCCCCHHHEEEEEEECCCCCCCCCCCCCCCEEEEECHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98886501133404704878937998876799998444303030589762323579999999999986373666983999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6555552246799999999999999999
Q gi|254780753|r 262 QCQQERSQHKNKAQAWNMLRAKLYELEL 289 (355)
Q Consensus 262 ~~q~~rsq~~Nk~~a~~~l~~~l~~~~~ 289 (355)
.||++|||++||+.|+++|+++|++...
T Consensus 81 ~~~~~RsQ~~N~~~a~~kL~~~l~~a~~ 108 (112)
T 1j26_A 81 TSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9887679999999999999999999748