HHsearch alignment of GI: 254780753 and MMDB domain: 1rq0_A_84-191_274-312
>1rq0_A (A:84-191,A:274-312) RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=363.27 Aligned_cols=146 Identities=38% Similarity=0.623 Sum_probs=138.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHEEECCEEEEEEE
Q ss_conf 66248998217787027789999999899998775311344420545458501346885055610000010120689873
Q gi|254780753|r 114 SNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRI 193 (355)
Q Consensus 114 ~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri 193 (355)
+++|+|+|+||+||+||++||++||+||.+||+++||++++++.++++.+|||||++.|.|++||++|++|+||||+||+
T Consensus 2 ~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~G~ksa~l~i~G~~ay~~l~~E~GvHrvir~ 81 (147)
T 1rq0_A 2 SDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRV 81 (147)
T ss_dssp CSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCCCCEEEEEEE
T ss_conf 45617999447770578899999999999998760345321223332334312121111023304543221100699973
Q ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 04666650356688788503442221112345503699853888655442731003588746974776655555224679
Q gi|254780753|r 194 SPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNK 273 (355)
Q Consensus 194 ~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk 273 (355)
|||++++|||||||+|+|+|.+++..++
T Consensus 82 sp~~~~~kr~ts~v~V~vlP~~~e~~~~---------------------------------------------------- 109 (147)
T 1rq0_A 82 PVTESGGRIHTSTATVAVLPEIEEKDII---------------------------------------------------- 109 (147)
T ss_dssp CTTSCSCCCEEEEEEEEEEECCCGGGS-----------------------------------------------------
T ss_pred CCCCCCCCEEEEEEEEEEEEECCCCCEC----------------------------------------------------
T ss_conf 3667767556676799999724655163----------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHCCC
Q ss_conf 999999999999999999999999987413323322210130158568331111472507977871897
Q gi|254780753|r 274 AQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGD 342 (355)
Q Consensus 274 ~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~vl~G~ 342 (355)
+..+|++||||||| ||+||||||+|.++++++.||+|+
T Consensus 110 ------------------------------~~~~rs~kirtynf-~~~rvtdhr~~~~~~~~~~~~~ge 147 (147)
T 1rq0_A 110 ------------------------------GTGERSEKIRTYNF-PQNRVTDHRINYTSYRLQEILDGD 147 (147)
T ss_dssp ----------------------------------CCCEEEEEET-TTTEEEETTTTEEESCHHHHHTTC
T ss_pred ------------------------------CCCCCCCCCCCCCC-CCCCCHHHCCCCCCCCHHHHHCCC
T ss_conf ------------------------------33456799704018-988742312598027867874987