HHsearch alignment of GI: 254780753 and MMDB domain: 2jy9_A_
>2jy9_A (A:) Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=99.94 E-value=7.6e-29 Score=226.46 Aligned_cols=116 Identities=28% Similarity=0.369 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEE------------------------ECCCHHHHHHHHHH
Q ss_conf 034422211123455036998538886554427310035887------------------------46974776655555
Q gi|254780753|r 212 YPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRIT------------------------HIPTGVVVQCQQER 267 (355)
Q Consensus 212 ~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~------------------------H~ptgi~v~~q~~r 267 (355)
+|++++ ++.|+++||++.|+|||||||||||||+|+|+|+ |+||||+|.||++|
T Consensus 1 ~~~~~~--~i~I~~~~l~~~f~RSsGpGGQ~VNKt~skV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~s~~~R 78 (148)
T 2jy9_A 1 MIAISR--TVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIRASGLPEYYKQRLLTASHHLISDDGVIIIKAQEFR 78 (148)
T ss_dssp CBCCSS--SCCBCSTTCEEEEECCSCCCSSCSCSCSCEEEEEECSTTSCCCHHHHHHHHHSCCTTBCSSSCEEEEECSSS
T ss_pred CCCCCC--CCCCCHHHEEEEEEECCCCCCCCCCHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 943478--782576990789887679987640122201478973144679979999999974545458971899976758
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 224679999999999999999999999999987--------41332332221013015856833111147
Q gi|254780753|r 268 SQHKNKAQAWNMLRAKLYELELQKREEIANIGE--------SSKTEIGWGRQIRSYVLQPYQMVKDLRTN 329 (355)
Q Consensus 268 sq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~g~~iRtY~~~p~~~v~DhR~~ 329 (355)
||++|++.|+.+|+++|.+...+.......... ..+..-++..++|+|||+|+++|+||||+
T Consensus 79 sQ~~N~~~al~kL~~~l~~~~~~~k~~~~~~~~~~~~r~rl~~Kk~rs~~K~~R~~~~~~~~~~~d~~~~ 148 (148)
T 2jy9_A 79 SQELNREAAIARLVAVIKELTAEQKSRRATRPTRASKERRLSSKAQKSSVKALRGKVRRPLDLEHHHHHH 148 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 9999999999999999998650777622467467899999999999899986248988975410101469