HHsearch alignment of GI: 254780753 and MMDB domain: 3d5a_X_1-99_332-354
>3d5a_X (X:1-99,X:332-354) RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X
Probab=99.40 E-value=1.8e-12 Score=109.50 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=79.8
Q ss_pred HCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 549-8999999999999870866002589999999999889999999999999986399999863100000023456676
Q gi|254780753|r 13 LFD-WDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDN 91 (355)
Q Consensus 13 ~fD-le~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~e 91 (355)
||+ ++.++.|+.+|+.++++|+||+||++|++++++++.|+++|+.|+.+.+..+|+.++.+|+. |+++.+++.++
T Consensus 1 l~~rLe~l~~r~~eLe~~lsdp~fw~D~~~a~~i~kE~~~L~~~v~~y~~l~~~~~di~el~el~~---D~e~~ela~eE 77 (122)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD---DPELKEMAKAE 77 (122)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHH
T ss_conf 915799999999999998709842239999999999999999999999999999998999999850---82211246789
Q ss_pred HHHHHHHHHHHH
Q ss_conf 555774015899
Q gi|254780753|r 92 LQRIKLEVEYKQ 103 (355)
Q Consensus 92 l~~l~~~le~LE 103 (355)
+..+...++.++
T Consensus 78 l~~L~~~i~~lE 89 (122)
T 3d5a_X 78 REALLARKEALE 89 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 987654577899