HHsearch alignment of GI: 254780753 and MMDB domain: 3d5a_X_1-99_332-354

>3d5a_X (X:1-99,X:332-354) RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X
Probab=99.40  E-value=1.8e-12  Score=109.50  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             HCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             549-8999999999999870866002589999999999889999999999999986399999863100000023456676
Q gi|254780753|r   13 LFD-WDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDN   91 (355)
Q Consensus        13 ~fD-le~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~e   91 (355)
                      ||+ ++.++.|+.+|+.++++|+||+||++|++++++++.|+++|+.|+.+.+..+|+.++.+|+.   |+++.+++.++
T Consensus         1 l~~rLe~l~~r~~eLe~~lsdp~fw~D~~~a~~i~kE~~~L~~~v~~y~~l~~~~~di~el~el~~---D~e~~ela~eE   77 (122)
T 3d5a_X            1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD---DPELKEMAKAE   77 (122)
T ss_dssp             CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---CHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHH
T ss_conf             915799999999999998709842239999999999999999999999999999998999999850---82211246789


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             555774015899
Q gi|254780753|r   92 LQRIKLEVEYKQ  103 (355)
Q Consensus        92 l~~l~~~le~LE  103 (355)
                      +..+...++.++
T Consensus        78 l~~L~~~i~~lE   89 (122)
T 3d5a_X           78 REALLARKEALE   89 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             987654577899