HHsearch results for GI: 254780753 and protein with PDBid: 3d5a_X
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=0 Score=913.42 Aligned_cols=341 Identities=31% Similarity=0.456 Sum_probs=315.1
Q ss_pred HCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 549-8999999999999870866002589999999999889999999999999986399999863100000023456676
Q gi|254780753|r 13 LFD-WDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDN 91 (355)
Q Consensus 13 ~fD-le~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~e 91 (355)
||| ++.++.|+.+|+++|++|+||+||++|++++||++.|+++|+.|+.+.+.++|+.++.+|+.++++.++.++...+
T Consensus 1 M~dKLe~i~~r~~eLe~~l~dp~~w~D~~ka~~l~ke~~~L~~~v~~~~~l~~~~~dl~el~el~~D~e~~ela~ee~~~ 80 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREA 80 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 91579999999999999861983223999999999999999999999999999999899999885281107899999999
Q ss_pred H-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 5-557740158998876303457662489982177870277899999998999987753113444205454585013468
Q gi|254780753|r 92 L-QRIKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATL 170 (355)
Q Consensus 92 l-~~l~~~le~LE~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~ 170 (355)
+ ..+....+++++.+||+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+.||||+|+|
T Consensus 81 l~~~l~~l~~ele~~lL~~~~~D~~nailEIrAGaGG~EA~dwA~~L~RMY~r~ae~~g~k~evi~~~~~~~~Gik~~~~ 160 (354)
T 3d5a_X 81 LLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVF 160 (354)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEE
T ss_conf 98778889999999717798655547179985167872499999999999999997475047861246655677505999
Q ss_pred EEECCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 85055610000010120689873046666503566887885034422211123455036998538886554427310035
Q gi|254780753|r 171 LIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAV 250 (355)
Q Consensus 171 ~I~G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~sav 250 (355)
.|+|+||||+||+|+|||||||||||+++||+|||||+|+|+|+.++ +++.|+++||+|||||||||||||||||+|||
T Consensus 161 ~i~G~~ayg~Lk~E~GvHRv~Rip~~e~~~r~hTs~a~V~v~p~~~~-~~~~i~~~dl~i~t~RssG~GGQ~VNkt~sAV 239 (354)
T 3d5a_X 161 EVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE-EDFALNMDEIRIDVMRASGPGGQGVNTTDSAV 239 (354)
T ss_dssp EEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCC-CCCCCCGGGEEEEEECCCSCCHHHHHHCCCEE
T ss_pred EEECCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEECCCCC-CCCCCCCHHHEEEEEECCCCCCCCCCCCCCEE
T ss_conf 99826630011440574268856988778855778889999455555-54566710322564345788766656545447
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88746974776655555224679999999999999999999999999987413-32332221013015856833111147
Q gi|254780753|r 251 RITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSK-TEIGWGRQIRSYVLQPYQMVKDLRTN 329 (355)
Q Consensus 251 ri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~iRtY~~~p~~~v~DhR~~ 329 (355)
||||+||||+|+||+|||||+||++||++|++|||+++.+++.++....+..+ +..+||+||||||| ||+||||||||
T Consensus 240 RitH~ptGi~v~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~-p~~rV~DhR~~ 318 (354)
T 3d5a_X 240 RVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNF-PQSRVTDHRIG 318 (354)
T ss_dssp EEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEET-TTTEEEETTTT
T ss_pred EEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCHHHCCC
T ss_conf 99970676688713302289999999999999999999999999999888733724466788467006-98751330448
Q ss_pred CEECCHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 25079778718977999999972259
Q gi|254780753|r 330 IEKTSPSDVLDGDLDDFMKATLAIKK 355 (355)
Q Consensus 330 ~~~~~~~~vl~G~ld~~i~a~l~~~~ 355 (355)
++++|++.||+|+||+||+||++|++
T Consensus 319 ~~~~~~~~vl~G~ld~~i~~~~~~~~ 344 (354)
T 3d5a_X 319 FTTHDLEGVLSGHLTPILEALKRADQ 344 (354)
T ss_dssp EEECCHHHHTTTCCHHHHHHHHHHHH
T ss_pred CEECCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 86368057758873999999999999