HHSEARCH alignment of GI: 254780753 and SCOP domain: d2b3tb1

Alignment
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=910.10  Aligned_cols=334  Identities=34%  Similarity=0.485  Sum_probs=312.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999870866002589999999999889999999999999986399999863100000023456676555774
Q gi|254780753|r   18 NAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQRIKL   97 (355)
Q Consensus        18 ~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~l~~   97 (355)
                      .++.|++||+.+|++|+||+||++|++++||++.|+++|+.|+.|.+.++|+.++.+|+.   |+++.+++.+++..+..
T Consensus         1 Ai~eR~eELe~~LsdPd~w~D~~kaqkLsKE~s~L~~iV~~~~~l~~~~~dleel~eL~e---D~E~~ela~eEl~el~~   77 (344)
T d2b3tb1           1 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLD---DPEMREMAQDELREAKE   77 (344)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred             CHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_conf             968999999998609850009999999999999999999999999999998999998827---95249999876666554


Q ss_pred             HHHHHH----HHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf             015899----8876303457662489982177870277899999998999987753113444205454585013468850
Q gi|254780753|r   98 EVEYKQ----FESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIK  173 (355)
Q Consensus        98 ~le~LE----~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~  173 (355)
                      .+++++    +.+||++|+|.+||||||||||||+||||||+||||||+|||+++||+++|++.++|+.||||+|+|.|+
T Consensus        78 ~l~~le~~l~~~ll~~~~~D~~~aileI~aGaGG~EA~dwA~~L~rMY~r~ae~~g~k~evl~~~~ge~~Gik~~~~~i~  157 (344)
T d2b3tb1          78 KSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKIS  157 (344)
T ss_dssp             -------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEEEE
T ss_conf             55677888898731442234444489995166657899999999999999998739860342235556786027999997


Q ss_pred             CCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf             55610000010120689873046666503566887885034422211123455036998538886554427310035887
Q gi|254780753|r  174 GPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRIT  253 (355)
Q Consensus       174 G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~  253 (355)
                      |+||||+||+|+|||||||||||+++||+|||||+|+|+|++++..+++|+|+||+|+|||||||||||||||+||||||
T Consensus       158 G~~ay~~lk~E~GvHRvqRip~~~~~~r~hts~~~v~v~p~~~~~~~~~i~~~dl~i~~~rssg~GGQ~vnkt~sAVRi~  237 (344)
T d2b3tb1         158 GDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRIT  237 (344)
T ss_dssp             SSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEE
T ss_pred             CCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCEEEEE
T ss_conf             57655234675222479860465313431431146754212453323442756444788427875544010143124899


Q ss_pred             ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCCCCCEE
Q ss_conf             46974776655555224679999999999999999999999999987413-32332221013015856833111147250
Q gi|254780753|r  254 HIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSK-TEIGWGRQIRSYVLQPYQMVKDLRTNIEK  332 (355)
Q Consensus       254 H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~iRtY~~~p~~~v~DhR~~~~~  332 (355)
                      |+||||+|+||+|||||+||++||++|++|||+++++++.++....|..+ +..+||+||||||| ||+||||||||+++
T Consensus       238 H~ptGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~-p~~~v~DhR~~~~~  316 (344)
T d2b3tb1         238 HLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNF-PQGRVTDHRINLTL  316 (344)
T ss_dssp             ETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEET-TTTEEEEGGGTEEE
T ss_pred             ECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC-CCCCCCEECCCCEE
T ss_conf             85776388745777616899999999999999999999999999987600400124384474415-98864201458866


Q ss_pred             CCHHHHHCCCHHHHHHHHHHCCC
Q ss_conf             79778718977999999972259
Q gi|254780753|r  333 TSPSDVLDGDLDDFMKATLAIKK  355 (355)
Q Consensus       333 ~~~~~vl~G~ld~~i~a~l~~~~  355 (355)
                      +|++.||+|+||+||+|||+|++
T Consensus       317 ~~~~~vl~G~ld~~i~~~~~~~~  339 (344)
T d2b3tb1         317 YRLDEVMEGKLDMLIEPIIQEHQ  339 (344)
T ss_dssp             SCHHHHHHTCTHHHHHHHHHHHH
T ss_pred             CCHHHHHCCCHHHHHHHHHHHHH
T ss_conf             78347649874999999999999


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Escherichia coli [TaxId: 562]