Query gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 355
No_of_seqs 271 out of 3128
Neff 6.5
Searched_HMMs 13730
Date Wed Jun 1 07:29:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780753.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 100.0 0 0 992.5 32.4 352 2-354 10-361 (362)
2 d2b3tb1 e.38.1.1 (B:7-354) Pep 100.0 0 0 910.1 14.9 334 18-355 1-339 (344)
3 d1rq0a_ e.38.1.1 (A:) Peptide 100.0 0 0 861.5 22.9 321 20-354 2-324 (333)
4 d1j26a_ d.50.4.1 (A:) Ict1 pro 99.5 1.8E-15 1.3E-19 128.0 4.5 66 219-284 13-103 (112)
5 d1seta1 a.2.7.1 (A:1-110) Sery 68.1 3.6 0.00026 18.7 8.6 99 13-114 1-108 (110)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 67.4 3.6 0.00027 18.7 4.3 52 15-67 12-63 (66)
7 d1fpoa2 a.23.1.1 (A:77-171) HS 50.9 6.9 0.0005 16.7 6.0 65 1-65 20-91 (95)
8 d1u5pa1 a.7.1.1 (A:1662-1771) 43.5 8.8 0.00064 15.9 10.5 84 15-102 10-93 (110)
9 d2vqei1 d.14.1.1 (I:2-128) Rib 42.9 4.8 0.00035 17.8 1.6 28 198-228 5-32 (127)
10 d2gy9i1 d.14.1.1 (I:4-129) Rib 39.2 5.1 0.00037 17.6 1.2 29 197-228 3-31 (126)
11 d1s35a1 a.7.1.1 (A:1063-1168) 39.1 10 0.00075 15.5 10.2 57 15-71 7-63 (106)
12 d2pc6a2 d.58.18.6 (A:1-77) Ace 36.1 7.7 0.00056 16.3 1.7 33 144-176 22-54 (77)
13 d1s35a2 a.7.1.1 (A:1169-1273) 34.4 12 0.00088 15.0 11.1 83 15-102 8-91 (105)
14 d1u5pa2 a.7.1.1 (A:1772-1872) 33.3 12 0.00091 14.9 10.6 84 15-103 6-90 (101)
15 d2fgca2 d.58.18.6 (A:27-104) A 31.1 8.6 0.00062 16.0 1.3 40 136-176 16-55 (78)
16 d2f1fa1 d.58.18.6 (A:2-77) Ace 30.5 10 0.00076 15.4 1.6 40 136-176 14-53 (76)
17 d1kl7a_ c.79.1.1 (A:) Threonin 29.0 7.3 0.00053 16.5 0.6 47 116-163 109-164 (511)
18 d1m0da_ c.52.1.17 (A:) Endonuc 28.3 9.1 0.00066 15.8 1.0 12 141-152 93-104 (129)
19 d1cuna2 a.7.1.1 (A:116-219) Sp 26.5 16 0.0012 14.1 10.6 83 15-102 5-88 (104)
20 d2g5ca1 a.100.1.12 (A:201-310) 25.2 17 0.0012 13.9 3.8 35 38-74 55-89 (110)
21 d1e85a_ a.24.3.2 (A:) Cytochro 24.0 18 0.0013 13.7 6.2 46 5-50 21-87 (125)
22 d2ctfa1 d.51.1.1 (A:7-96) Vigi 22.4 17 0.0012 13.9 1.5 48 236-286 36-86 (90)
23 d2spca_ a.7.1.1 (A:) Spectrin 21.1 20 0.0015 13.4 6.8 83 15-102 11-94 (107)
24 d1vqod1 d.77.1.1 (D:10-174) Ri 20.3 21 0.0015 13.2 1.7 74 158-235 55-128 (165)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=992.54 Aligned_cols=352 Identities=52% Similarity=0.847 Sum_probs=344.0
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56899999886549899999999999987086600258999999999988999999999999998639999986310000
Q gi|254780753|r 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDD 81 (355)
Q Consensus 2 EL~~rl~~l~~~fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D 81 (355)
+|++++..|+++||++.++.|+.+|+.+|++|+||+||++|++++||++.|+++|+.|+.+.+.++|+.++.+|+.+++|
T Consensus 10 eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~ee~d 89 (362)
T d1gqea_ 10 DLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADD 89 (362)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997769798999999999986397144499999999999999999999999999999988877877641105
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00234566765557740158998876303457662489982177870277899999998999987753113444205454
Q gi|254780753|r 82 CSILQETSDNLQRIKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGE 161 (355)
Q Consensus 82 ~el~eE~~~el~~l~~~le~LE~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e 161 (355)
.++.+++..++..+...++++++.+||+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+
T Consensus 90 eel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e 169 (362)
T d1gqea_ 90 EETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGE 169 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 88888899999998622467787521367545454379998257606688999999999999999759858994145677
Q ss_pred CCCEEEEEEEEECCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 58501346885055610000010120689873046666503566887885034422211123455036998538886554
Q gi|254780753|r 162 EAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQ 241 (355)
Q Consensus 162 ~~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq 241 (355)
.||||+|+|.|+|+||||+||+|+|||||||||||+++||||||||+|+|+|+++++++++|+|+||+||||||||||||
T Consensus 170 ~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ 249 (362)
T d1gqea_ 170 VAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ 249 (362)
T ss_dssp SSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEEEECCCCCCC
T ss_conf 66546999999776688999872375048884046777347998778899624787631111767827997526998865
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 42731003588746974776655555224679999999999999999999999999987413323322210130158568
Q gi|254780753|r 242 HVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGRQIRSYVLQPYQ 321 (355)
Q Consensus 242 ~vn~t~savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~~p~~ 321 (355)
|||||+|||||||+||||+|+||+|||||+||++||++|++|||+++++++.++.+..++++.+++||+||||||| ||+
T Consensus 250 ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iRtY~~-~~~ 328 (362)
T d1gqea_ 250 HVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIRSYVL-DDS 328 (362)
T ss_dssp STTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEEEEEEG-GGT
T ss_pred CHHHHHCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCC
T ss_conf 1203314168874473367776422101478999999999999999999999999988742312757698467658-998
Q ss_pred CCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCC
Q ss_conf 331111472507977871897799999997225
Q gi|254780753|r 322 MVKDLRTNIEKTSPSDVLDGDLDDFMKATLAIK 354 (355)
Q Consensus 322 ~v~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~ 354 (355)
||||||||++++|++.||+|+||+||+|||+..
T Consensus 329 rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~ 361 (362)
T d1gqea_ 329 RIKDLRTGVETRNTQAVLDGSLDQFIEASLKAG 361 (362)
T ss_dssp EEEETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred CCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCC
T ss_conf 150005397257846875887799999998777
No 2
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=910.10 Aligned_cols=334 Identities=34% Similarity=0.485 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999870866002589999999999889999999999999986399999863100000023456676555774
Q gi|254780753|r 18 NAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQRIKL 97 (355)
Q Consensus 18 ~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~l~~ 97 (355)
.++.|++||+.+|++|+||+||++|++++||++.|+++|+.|+.|.+.++|+.++.+|+. |+++.+++.+++..+..
T Consensus 1 Ai~eR~eELe~~LsdPd~w~D~~kaqkLsKE~s~L~~iV~~~~~l~~~~~dleel~eL~e---D~E~~ela~eEl~el~~ 77 (344)
T d2b3tb1 1 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLD---DPEMREMAQDELREAKE 77 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred CHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_conf 968999999998609850009999999999999999999999999999998999998827---95249999876666554
Q ss_pred HHHHHH----HHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
Q ss_conf 015899----8876303457662489982177870277899999998999987753113444205454585013468850
Q gi|254780753|r 98 EVEYKQ----FESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIK 173 (355)
Q Consensus 98 ~le~LE----~~~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~ 173 (355)
.+++++ +.+||++|+|.+||||||||||||+||||||+||||||+|||+++||+++|++.++|+.||||+|+|.|+
T Consensus 78 ~l~~le~~l~~~ll~~~~~D~~~aileI~aGaGG~EA~dwA~~L~rMY~r~ae~~g~k~evl~~~~ge~~Gik~~~~~i~ 157 (344)
T d2b3tb1 78 KSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKIS 157 (344)
T ss_dssp -------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEEEE
T ss_conf 55677888898731442234444489995166657899999999999999998739860342235556786027999997
Q ss_pred CCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 55610000010120689873046666503566887885034422211123455036998538886554427310035887
Q gi|254780753|r 174 GPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRIT 253 (355)
Q Consensus 174 G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~ 253 (355)
|+||||+||+|+|||||||||||+++||+|||||+|+|+|++++..+++|+|+||+|+|||||||||||||||+||||||
T Consensus 158 G~~ay~~lk~E~GvHRvqRip~~~~~~r~hts~~~v~v~p~~~~~~~~~i~~~dl~i~~~rssg~GGQ~vnkt~sAVRi~ 237 (344)
T d2b3tb1 158 GDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRIT 237 (344)
T ss_dssp SSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEE
T ss_pred CCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCEEEEE
T ss_conf 57655234675222479860465313431431146754212453323442756444788427875544010143124899
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCCCCCEE
Q ss_conf 46974776655555224679999999999999999999999999987413-32332221013015856833111147250
Q gi|254780753|r 254 HIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSK-TEIGWGRQIRSYVLQPYQMVKDLRTNIEK 332 (355)
Q Consensus 254 H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~iRtY~~~p~~~v~DhR~~~~~ 332 (355)
|+||||+|+||+|||||+||++||++|++|||+++++++.++....|..+ +..+||+||||||| ||+||||||||+++
T Consensus 238 H~ptGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~-p~~~v~DhR~~~~~ 316 (344)
T d2b3tb1 238 HLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNF-PQGRVTDHRINLTL 316 (344)
T ss_dssp ETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEET-TTTEEEEGGGTEEE
T ss_pred ECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC-CCCCCCEECCCCEE
T ss_conf 85776388745777616899999999999999999999999999987600400124384474415-98864201458866
Q ss_pred CCHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 79778718977999999972259
Q gi|254780753|r 333 TSPSDVLDGDLDDFMKATLAIKK 355 (355)
Q Consensus 333 ~~~~~vl~G~ld~~i~a~l~~~~ 355 (355)
+|++.||+|+||+||+|||+|++
T Consensus 317 ~~~~~vl~G~ld~~i~~~~~~~~ 339 (344)
T d2b3tb1 317 YRLDEVMEGKLDMLIEPIIQEHQ 339 (344)
T ss_dssp SCHHHHHHTCTHHHHHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 78347649874999999999999
No 3
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=861.49 Aligned_cols=321 Identities=35% Similarity=0.558 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987086600258999999999988999999999999998639999986310000002345667655577401
Q gi|254780753|r 20 VQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEV 99 (355)
Q Consensus 20 ~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~l~~~l 99 (355)
++|+++|+.+|++|+||+| ++++++++++.|+++++.++. ++|+.++++++.++.|.++ ++..+...+
T Consensus 2 ~~r~~eLe~~l~dPd~~~d--~~~~lske~~~L~~i~~l~~~----~~d~~el~el~~ee~d~e~------el~~l~~~l 69 (333)
T d1rq0a_ 2 KEKKKEIEKLLARPDLTPE--QMKNYGMEYAKIEEIENITNR----IKETQEFIELLREEGENEL------EIEKYEKEL 69 (333)
T ss_dssp TTTTTHHHHHHHSSCCCHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTTTTTTTTCCS------CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCHH------HHHHHHHHH
T ss_conf 5899999999838998999--999999999999999999999----9989999999873887589------999999889
Q ss_pred HHHHHH-HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 589988-7630345766248998217787027789999999899998775311344420545458501346885055610
Q gi|254780753|r 100 EYKQFE-SLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAY 178 (355)
Q Consensus 100 e~LE~~-~Lls~e~D~~nailEI~AGaGG~EA~dwA~~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ay 178 (355)
++++.+ .+|.+|+|++||||||||||||+||||||+||||||+|||+++||++++++.++|+.||||+|+|.|+|++||
T Consensus 70 ~~l~~el~~l~~p~D~~nailEIrAGaGG~EA~~fA~~L~RMY~r~Ae~kgwk~eil~~~~~e~gGiK~v~~~I~G~~ay 149 (333)
T d1rq0a_ 70 DQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAY 149 (333)
T ss_dssp HHHHHHHHHHHSCSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHH
T ss_pred HHHHHHHHCCCCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEECCCCCH
T ss_conf 99999863324200134627999447871789999999999999998660345321223332333311222000022213
Q ss_pred HHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCH
Q ss_conf 00001012068987304666650356688788503442221112345503699853888655442731003588746974
Q gi|254780753|r 179 GWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTG 258 (355)
Q Consensus 179 g~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~H~ptg 258 (355)
|+||+|+|||||||||||+++||||||||+|+|+|++++ ++++|+|+||+|+|||||||||||||||+|||||||+|||
T Consensus 150 g~Lk~E~GvHRv~Rvp~~~~~~r~hTs~~~V~v~p~~~~-~~v~i~~~dl~i~~~RssG~GGQ~VNkt~sAVRitH~PTG 228 (333)
T d1rq0a_ 150 GILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEE-KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTG 228 (333)
T ss_dssp HHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCG-GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTC
T ss_pred HHHCCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCC-CCCCCCCCCEEEEEECCCCCCCCHHHHHHHEEEEEECCCC
T ss_conf 442100110268872245777755777899997412344-3221003433688513775322212113100379985886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCCCCCEECCHHH
Q ss_conf 776655555224679999999999999999999999999987413-3233222101301585683311114725079778
Q gi|254780753|r 259 VVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSK-TEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSD 337 (355)
Q Consensus 259 i~v~~q~~rsq~~Nk~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~iRtY~~~p~~~v~DhR~~~~~~~~~~ 337 (355)
|+|.||++||||+||++||++|++|||+++.+++.++....+..+ +..+||+||||||| ||+||||||||++++|+++
T Consensus 229 i~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~-p~~rV~DhR~~~~~~~l~~ 307 (333)
T d1rq0a_ 229 IVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNF-PQNRVTDHRINYTSYRLQE 307 (333)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEET-TTTEEEETTTTEEESCHHH
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC-CCCCCHHHCCCCEECCHHH
T ss_conf 188711155617899999999999999999998789999988603214446788642438-9986166414985468457
Q ss_pred HHCCCHHHHHHHHHHCC
Q ss_conf 71897799999997225
Q gi|254780753|r 338 VLDGDLDDFMKATLAIK 354 (355)
Q Consensus 338 vl~G~ld~~i~a~l~~~ 354 (355)
||+|+||+||++++.|.
T Consensus 308 vl~G~ld~~i~~~~~~~ 324 (333)
T d1rq0a_ 308 ILDGDLDEIISKLIEHD 324 (333)
T ss_dssp HHTTCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
T ss_conf 75887399999999999
No 4
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.54 E-value=1.8e-15 Score=127.99 Aligned_cols=66 Identities=27% Similarity=0.382 Sum_probs=59.0
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEE-------ECC------------------CHHHHHHHHHHHHHHHH
Q ss_conf 11123455036998538886554427310035887-------469------------------74776655555224679
Q gi|254780753|r 219 IEIEISESDCRIDTYRASGAGGQHVNTTDSAVRIT-------HIP------------------TGVVVQCQQERSQHKNK 273 (355)
Q Consensus 219 ~~i~i~~~dl~i~~~rssg~ggq~vn~t~savri~-------H~p------------------tgi~v~~q~~rsq~~Nk 273 (355)
....|+.+++.+.+.|||||||||||||+|+|.|+ ++| ..|+|.||..|||++||
T Consensus 13 ~~~~Ip~~~i~~~f~RSsGPGGQ~VNKv~TkV~Lr~~v~~s~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~~Nr 92 (112)
T d1j26a_ 13 ASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNL 92 (112)
T ss_dssp SCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHH
T ss_pred HCCCCCHHHEEEEEEECCCCCCCCCCEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH
T ss_conf 13724878948998874799998402013479999961104457989999998876502257973999976657999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780753|r 274 AQAWNMLRAKL 284 (355)
Q Consensus 274 ~~a~~~l~~~l 284 (355)
+.|+++|...|
T Consensus 93 ~~a~~kL~~li 103 (112)
T d1j26a_ 93 AECLQKIRDMI 103 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=68.05 E-value=3.6 Score=18.73 Aligned_cols=99 Identities=11% Similarity=0.111 Sum_probs=53.0
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH---HHH
Q ss_conf 54989999999999998708660025899999999998899999999999999863999998631000000234---566
Q gi|254780753|r 13 LFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQ---ETS 89 (355)
Q Consensus 13 ~fDle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~e---E~~ 89 (355)
|+|+.-++...+.+...+..-++=-|.+...++-.+...+...++.+..-.+.+ ..-+.-+..++..++.+ .+.
T Consensus 1 MlDik~ir~n~e~v~~~l~~R~~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~---sk~i~k~~~~~~~~l~~~~k~lk 77 (110)
T d1seta1 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQV---AKRVPKAPPEEKEALIARGKALG 77 (110)
T ss_dssp CCCHHHHHHCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHGGGCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 989899986999999999875996379999999999999999999999999999---99988741323699999888899
Q ss_pred HHHHHHHHHHHHHHHH------HHHCCCCCC
Q ss_conf 7655577401589988------763034576
Q gi|254780753|r 90 DNLQRIKLEVEYKQFE------SLLSGEADS 114 (355)
Q Consensus 90 ~el~~l~~~le~LE~~------~Lls~e~D~ 114 (355)
.++..++..+..++-. .+|+-|+|+
T Consensus 78 ~~i~~le~~~~~~~~~l~~~ll~iPNi~~~~ 108 (110)
T d1seta1 78 EEAKRLEEALREKEARLEALLLQVPLPPWPG 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999999999999998099999856
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=67.38 E-value=3.6 Score=18.68 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999870866002589999999999889999999999999986
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLC 67 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~ 67 (355)
+++.+...+..++..|+.|+|++.-.. .-+.++...+......+..+...+.
T Consensus 12 ~l~kl~~~i~~~~~kL~N~~F~~kAP~-~Vv~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 12 RLKELLALAERSQRKLASPGFREKAPK-EVVEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHTSTTHHHHSCT-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999988878078776989-9999999999999999999999998
No 7
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=50.85 E-value=6.9 Score=16.71 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 95689999988654989-------999999999998708660025899999999998899999999999999
Q gi|254780753|r 1 MKLSRQLNCLGGLFDWD-------NAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDR 65 (355)
Q Consensus 1 ~EL~~rl~~l~~~fDle-------~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~ 65 (355)
||+...++.+..--|.+ .+..++.++...++..=--.|-..|....+++.-+.++.+.++.+...
T Consensus 20 ME~RE~lee~~~~~d~~~l~~l~~ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~~~e~~ 91 (95)
T d1fpoa2 20 LELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEK 91 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987663799999999999999999999999999870130999999999867899999999999997
No 8
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=43.54 E-value=8.8 Score=15.94 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 98999999999999870866002589999999999889999999999999986399999863100000023456676555
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEEDDCSILQETSDNLQR 94 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~~ 94 (355)
+++.+..-+.+.+..++.+++=+|+..++.+.+++..+...+..+..-...+.+...- |.... +.....+...+..
T Consensus 10 ~~~el~~Wl~e~e~~l~~~~~g~d~~~~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~--L~~~~--~~~~~~i~~~~~~ 85 (110)
T d1u5pa1 10 GIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADS--LMTSS--AFDTSQVKDKRET 85 (110)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCS--SSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCC--CCCHHHHHHHHHH
T ss_conf 9999999999999985399888999999999999999999999806799999999999--87048--8758999999999
Q ss_pred HHHHHHHH
Q ss_conf 77401589
Q gi|254780753|r 95 IKLEVEYK 102 (355)
Q Consensus 95 l~~~le~L 102 (355)
+...-+.+
T Consensus 86 l~~~w~~l 93 (110)
T d1u5pa1 86 INGRFQRI 93 (110)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 9
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=42.91 E-value=4.8 Score=17.81 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 6650356688788503442221112345503
Q gi|254780753|r 198 SNSRRHTSFSSIWVYPVVDDSIEIEISESDC 228 (355)
Q Consensus 198 s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl 228 (355)
+.|||.||.|.|.+.|-- -.|.||..++
T Consensus 5 ~~GrRKtaiArv~l~~G~---G~I~IN~~~~ 32 (127)
T d2vqei1 5 GTGRRKEAVARVFLRPGN---GKVTVNGQDF 32 (127)
T ss_dssp ECCEETTEEEEEEEEESS---CCEEESSSBH
T ss_pred EECCCCCEEEEEEEECCC---CEEEEECHHH
T ss_conf 335460589999998388---4499804137
No 10
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}
Probab=39.16 E-value=5.1 Score=17.62 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=21.0
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 66650356688788503442221112345503
Q gi|254780753|r 197 DSNSRRHTSFSSIWVYPVVDDSIEIEISESDC 228 (355)
Q Consensus 197 ~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl 228 (355)
-+-|||.||.|.|.+.|-- -.|.||..++
T Consensus 3 y~tGrRKtaiArv~l~~G~---G~I~IN~~~~ 31 (126)
T d2gy9i1 3 YGTGRRKSSAARVFIKPGN---GKIVINQRSL 31 (126)
T ss_dssp EECCEETTEEEEEEEEESS---SCEEETTEEH
T ss_pred CCCCCCCCEEEEEEEEECC---CEEEECCHHH
T ss_conf 0316251589999999267---6797870457
No 11
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.05 E-value=10 Score=15.47 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999998708660025899999999998899999999999999863999
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLI 71 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~e 71 (355)
+++.+..=+.+.+..+..++.-.|...++.+.+.+..+..-+.........+.+...
T Consensus 7 ~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~h~~l~~ei~~~~~~~~~~~~~g~ 63 (106)
T d1s35a1 7 DLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 63 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999738889999999999999999999888878999999999999
No 12
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=36.07 E-value=7.7 Score=16.35 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf 987753113444205454585013468850556
Q gi|254780753|r 144 WAEKRKFKTEALEIHDGEEAGIKSATLLIKGPN 176 (355)
Q Consensus 144 ~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ 176 (355)
-..++||+.+-+...+++..|+...++-+.|+.
T Consensus 22 lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~ 54 (77)
T d2pc6a2 22 LFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD 54 (77)
T ss_dssp HHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH
T ss_pred HHHCCCCCEEEEEEECCCCCCEEEEEEEEECCH
T ss_conf 986068546889974258998389999997788
No 13
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.38 E-value=12 Score=14.97 Aligned_cols=83 Identities=12% Similarity=-0.031 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 989999999999998708660025899999999998899999999999999863-9999986310000002345667655
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCD-NLILLELALEEDDCSILQETSDNLQ 93 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~D-l~eL~ELa~ee~D~el~eE~~~el~ 93 (355)
|.+.+..-+.+-+..++.+++=.|...++.+.+++..++..+..+..-...+.. ...|+.- ...+. +.+...+.
T Consensus 8 d~~~~~~Wi~~~e~~l~~~~~g~dl~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~--~~~~~---~~I~~~~~ 82 (105)
T d1s35a2 8 DAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAE--GNLYS---DKIKEKVQ 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCC---HHHHHHHH
T ss_conf 99999999999887860888789999999999879999999998699999899999998436--99742---68999999
Q ss_pred HHHHHHHHH
Q ss_conf 577401589
Q gi|254780753|r 94 RIKLEVEYK 102 (355)
Q Consensus 94 ~l~~~le~L 102 (355)
.+...-+.+
T Consensus 83 ~l~~rw~~l 91 (105)
T d1s35a2 83 LIEDRHRKN 91 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 14
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.32 E-value=12 Score=14.85 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 989999999999998708660025899999999998899999999999-9998639999986310000002345667655
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEI-QDRLCDNLILLELALEEDDCSILQETSDNLQ 93 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l-~~~l~Dl~eL~ELa~ee~D~el~eE~~~el~ 93 (355)
+++.+..-+.+.+..+.+++.=+|+..++.+.+++..++..+.....- .........|+.- ...+. ..+...+.
T Consensus 6 ~~~el~~Wl~e~~~~l~s~~~g~d~~~~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~--~~~~~---~~I~~~~~ 80 (101)
T d1u5pa2 6 DMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGK---EEIQQRLA 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCH---HHHHHHHH
T ss_conf 99999999999999860988899999999999999999999998188999999999999770--99858---99999999
Q ss_pred HHHHHHHHHH
Q ss_conf 5774015899
Q gi|254780753|r 94 RIKLEVEYKQ 103 (355)
Q Consensus 94 ~l~~~le~LE 103 (355)
.+...-..|.
T Consensus 81 ~l~~~w~~L~ 90 (101)
T d1u5pa2 81 QFVDHWKELK 90 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 15
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=31.13 E-value=8.6 Score=16.03 Aligned_cols=40 Identities=15% Similarity=0.468 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf 99998999987753113444205454585013468850556
Q gi|254780753|r 136 MLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPN 176 (355)
Q Consensus 136 ~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ 176 (355)
.|.|+=. -+.++||+.+-+...+++..|+...++-+.|+.
T Consensus 16 vL~Ri~~-lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~ 55 (78)
T d2fgca2 16 VMRKVAN-LFARRGFNISSITVGESETPGLSRLVIMVKGDD 55 (78)
T ss_dssp HHHHHHH-HHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT
T ss_pred HHHHHHH-HHHHCCCCEEEEEEEECCCCCEEEEEEEEECCH
T ss_conf 9999999-986178554788982137998489999998498
No 16
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=30.45 E-value=10 Score=15.40 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC
Q ss_conf 99998999987753113444205454585013468850556
Q gi|254780753|r 136 MLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPN 176 (355)
Q Consensus 136 ~L~rMY~r~ae~~gwk~evi~~~~~e~~GiK~~~~~I~G~~ 176 (355)
.|.|+=.- ..++||+.+-+...+++..|+...++-+.|+.
T Consensus 14 VL~Risgl-F~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~ 53 (76)
T d2f1fa1 14 ALSRVIGL-FSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE 53 (76)
T ss_dssp HHHHHHHH-HHTTTCCCSEEEEEECSCSSEEEEEEEEESCH
T ss_pred HHHHHHHH-HHHCCCCEEEEEECCCCCCCEEEEEEEEECCH
T ss_conf 99999999-87268556788970457998129999997888
No 17
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.99 E-value=7.3 Score=16.51 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=29.4
Q ss_pred CEEEEEECCCCCHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHCCCCCCC
Q ss_conf 248998217787027789-999999899998775311--------344420545458
Q gi|254780753|r 116 DAYLEVHAGAGGTESQDW-ANMLLRMYTRWAEKRKFK--------TEALEIHDGEEA 163 (355)
Q Consensus 116 nailEI~AGaGG~EA~dw-A~~L~rMY~r~ae~~gwk--------~evi~~~~~e~~ 163 (355)
--++|+--|-.+-= -|| +..|.+++..+..+++.+ +-|+-.+.||-|
T Consensus 109 ~~vlELfhGPT~aF-KD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG 164 (511)
T d1kl7a_ 109 LHILELFHGPTYAF-KDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTG 164 (511)
T ss_dssp EEEEECCCSTTSBT-HHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHH
T ss_pred EEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 58876223886442-686155689999999985133223456741899982477741
No 18
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=28.34 E-value=9.1 Score=15.84 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999987753113
Q gi|254780753|r 141 YTRWAEKRKFKT 152 (355)
Q Consensus 141 Y~r~ae~~gwk~ 152 (355)
|-.||+++||++
T Consensus 93 Ya~WCek~gf~~ 104 (129)
T d1m0da_ 93 YGEFCEKHGIKF 104 (129)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHCCCCC
T ss_conf 999998739974
No 19
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.54 E-value=16 Score=14.07 Aligned_cols=83 Identities=7% Similarity=0.098 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 989999999999998708660025899999999998899999999999999-8639999986310000002345667655
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDR-LCDNLILLELALEEDDCSILQETSDNLQ 93 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~-l~Dl~eL~ELa~ee~D~el~eE~~~el~ 93 (355)
|++.+..=+.+.+..++.+++=.|+..++.+.+.+..++..+......... ......|.... ..+. ..+...+.
T Consensus 5 ~~~e~~~Wl~e~~~~l~~~~~g~d~~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~--~~~~---~~I~~~~~ 79 (104)
T d1cuna2 5 NVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKN--NHHV---ENITAKMK 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCH---HHHHHHHH
T ss_conf 999999999999998719888899999999999999999999981899999999999997729--9648---99999999
Q ss_pred HHHHHHHHH
Q ss_conf 577401589
Q gi|254780753|r 94 RIKLEVEYK 102 (355)
Q Consensus 94 ~l~~~le~L 102 (355)
.+...-..|
T Consensus 80 ~l~~~w~~L 88 (104)
T d1cuna2 80 GLKGKVSDL 88 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 20
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=25.21 E-value=17 Score=13.90 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899999999998899999999999999863999998
Q gi|254780753|r 38 NVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLE 74 (355)
Q Consensus 38 D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~Dl~eL~E 74 (355)
||+--..+. ...-..+++.++.+...+++++.+++
T Consensus 55 ~p~mW~dI~--~~N~~~i~~~l~~~~~~L~~~~~~l~ 89 (110)
T d2g5ca1 55 DPIMWRDIF--LENKENVMKAIEGFEKSLNHLKELIV 89 (110)
T ss_dssp CHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999--97899999999999999999999998
No 21
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Probab=23.99 E-value=18 Score=13.75 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=26.4
Q ss_pred HHHHHHHHH------CCHHHHHHHHHHHHHHH---------------HCCCCCCCHHHHHHHHHHHH
Q ss_conf 999998865------49899999999999987---------------08660025899999999998
Q gi|254780753|r 5 RQLNCLGGL------FDWDNAVQRLSFLNTKT---------------EDPHLWQNVIEAKMLMRERQ 50 (355)
Q Consensus 5 ~rl~~l~~~------fDle~~~~rl~eLE~~l---------------sdp~fW~D~~kAqkl~KE~s 50 (355)
..+..|+.| ||.+........|.... +.|.+|+|+..+......+.
T Consensus 21 ~~~~~l~~m~kg~~~~D~~~~~~~a~~l~~~a~~~~~~Fp~gs~~s~A~~~IW~d~~~F~~~~~~~~ 87 (125)
T d1e85a_ 21 SHFGRMTPVVKGQAPYDAAQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQ 87 (125)
T ss_dssp HHHHTTHHHHTTSSCCCHHHHHHHHHHHHHHHTSSGGGSCTTCCCTTBCTHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHH
T ss_conf 9999999997799988999999999999998771185378999876445798869998999999999
No 22
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.43 E-value=17 Score=13.87 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCCCCCCCCCC--C-EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88655442731--0-035887469747766555552246799999999999999
Q gi|254780753|r 236 SGAGGQHVNTT--D-SAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYE 286 (355)
Q Consensus 236 sg~ggq~vn~t--~-savri~H~ptgi~v~~q~~rsq~~Nk~~a~~~l~~~l~~ 286 (355)
=|+||++++.- + +.|+|..-+..-.|..++... +-+.|-+.+.+.+-+
T Consensus 36 IG~~G~~I~~i~~~~~~v~I~~~~~~~~v~i~G~~~---~ve~Ak~~I~~iv~e 86 (90)
T d2ctfa1 36 IGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTE---DVSVAQEQIEGMVKD 86 (90)
T ss_dssp HTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEECHH---HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCEEEEECCHH---HHHHHHHHHHHHHHH
T ss_conf 789954599999985981896079875178728999---999999999999999
No 23
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=21.13 E-value=20 Score=13.36 Aligned_cols=83 Identities=11% Similarity=-0.022 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98999999999999870866002589999999999889999999999999986-39999986310000002345667655
Q gi|254780753|r 15 DWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLC-DNLILLELALEEDDCSILQETSDNLQ 93 (355)
Q Consensus 15 Dle~~~~rl~eLE~~lsdp~fW~D~~kAqkl~KE~s~L~~iV~~~~~l~~~l~-Dl~eL~ELa~ee~D~el~eE~~~el~ 93 (355)
|.+.+..=+.+-+..+...++-.|...+..+.+++..+...+..+......+. ....|+.- ...+ ...+...+.
T Consensus 11 ~~~~~~~Wl~e~e~~l~~~~~g~d~~~~~~l~~~h~~~~~ei~~~~~~~~~l~~~~~~L~~~--~~~~---~~~I~~~~~ 85 (107)
T d2spca_ 11 DCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQ--NHYA---SNLVDEKRK 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC---HHHHHHHHH
T ss_conf 99999999998999971888789999999999999999999997399999999999999870--9985---899999999
Q ss_pred HHHHHHHHH
Q ss_conf 577401589
Q gi|254780753|r 94 RIKLEVEYK 102 (355)
Q Consensus 94 ~l~~~le~L 102 (355)
.+...-..|
T Consensus 86 ~l~~~w~~L 94 (107)
T d2spca_ 86 QVLERWRHL 94 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 24
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=20.34 E-value=21 Score=13.25 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=41.1
Q ss_pred CCCCCCCEEEEEEEEECCCCCHHHEEECCEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 545458501346885055610000010120689873046666503566887885034422211123455036998538
Q gi|254780753|r 158 HDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRA 235 (355)
Q Consensus 158 ~~~e~~GiK~~~~~I~G~~ayg~Lk~E~GvHRv~Ri~~~~s~gR~hTS~a~V~V~P~~~~~~~i~i~~~dl~i~~~rs 235 (355)
-.|..-|+| +.+.|+.+|.+|.-=--+ ...++..||.+|-..--.--..+.|+++-+....|.-=|+-|.|-|.
T Consensus 55 Rkg~piG~k---VTLRg~~m~~FL~rll~~-~~~~~k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~Gm~Itivt~~~ 128 (165)
T d1vqod1 55 REGDPIGAK---VTLRDEMAEEFLQTALPL-AELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRP 128 (165)
T ss_dssp CSSSEEEEE---EEECTHHHHHHHHTTGGG-SCCCSTTBCSSSCEEEC--------------------CEEEEEEECG
T ss_pred CCCCEEEEE---EEEECHHHHHHHHHHHCC-CCCCCCCCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 489847899---997246689999998451-34774463896168867414010565410456675143599995688
Done!