RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780753|ref|YP_003065166.1| peptide chain release factor 2
[Candidatus Liberibacter asiaticus str. psy62]
(355 letters)
>2b3t_B RF-1, peptide chain release factor 1; translation
termination, methylation, conformational changes; HET:
SAH; 3.10A {Escherichia coli} (B:84-214,B:295-336)
Length = 173
Score = 163 bits (413), Expect = 5e-41
Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 96 KLEVEYKQFES--LLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTE 153
K E +Q + L D +A+LEV AG GG E+ +A L RMY+R+AE R+++ E
Sbjct: 5 KSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVE 64
Query: 154 ALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYP 213
+ +GE G K I G YG LK E G HR+ R+ +S R HTS ++ V P
Sbjct: 65 IMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMP 124
Query: 214 VVDDS-IEIEISESDC--RIDTY 233
+ D+ + + D R TY
Sbjct: 125 ELPDAELRNLLGSGDRSDRNRTY 147
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
macromolecular mimicry, translation; 1.81A {Escherichia
coli} (A:121-231,A:315-365)
Length = 162
Score = 160 bits (407), Expect = 2e-40
Identities = 75/124 (60%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 110 GEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSAT 169
GE DS D YL++ AG+GGTE+QDWA+ L R Y RWAE R FKTE +E +GE AGIKS T
Sbjct: 1 GEYDSADCYLDIQAGSGGTEAQDWASXLERXYLRWAESRGFKTEIIEESEGEVAGIKSVT 60
Query: 170 LLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCR 229
+ I G AYGWL+ E GVHRLVR SP+DS RRHTSFSS +VYP VDD I+ +I +
Sbjct: 61 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDSDIGWGS-Q 119
Query: 230 IDTY 233
I +Y
Sbjct: 120 IRSY 123
Score = 72.9 bits (179), Expect = 5e-14
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 300 ESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352
+ ++IGWG QIRSYVL +KDLRT +E + VLDG LD F++A+L
Sbjct: 108 DDIDSDIGWGSQIRSYVLDDS-RIKDLRTGVETRNTQAVLDGSLDQFIEASLK 159
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release
factor 1 (RF-1), structural genomics, joint center for
structural genomics, JCSG; 2.34A {Streptococcus mutans}
(A:117-228,A:312-349)
Length = 150
Score = 159 bits (403), Expect = 6e-40
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 110 GEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSAT 169
D + LE+ AGG E+ +A LL Y ++AE + +K E E G+K
Sbjct: 2 DPNDDKNIILEIRGAAGGDEAALFAGDLLNXYQKYAENQGWKFEVXEASANGVGGLKEVV 61
Query: 170 LLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCR 229
+ G + Y LK E G HR+ R+ +S R HTS +++ V P V++ +E + R
Sbjct: 62 AXVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVXPEVEE-VEYGTGDRSER 120
Query: 230 IDTY 233
I TY
Sbjct: 121 IRTY 124
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta,
translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y*
3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
(1:111-220,1:304-365)
Length = 172
Score = 158 bits (401), Expect = 9e-40
Identities = 62/121 (51%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 113 DSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLI 172
+A L + GAGGTE+ DWA MLLRMYTR+AE++ F+ E +++ G EAGI A +L+
Sbjct: 2 AEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILV 61
Query: 173 KGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDT 232
KG NAYG L E GVHRLVR SP+D++ RRHTSF+ + V P VD+ +E+ I +I +
Sbjct: 62 KGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVPIEWGS-QIRS 120
Query: 233 Y 233
Y
Sbjct: 121 Y 121
Score = 66.4 bits (162), Expect = 5e-12
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 300 ESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352
E + I WG QIRSYVL VKD RT + + P +VLDGDL D + A L
Sbjct: 106 EEVEVPIEWGSQIRSYVL-DKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLE 157
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB:
2b64_Y 3d5c_X (X:100-210,X:297-331)
Length = 146
Score = 158 bits (401), Expect = 1e-39
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 111 EADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATL 170
D DA +E+ AG GG E+ +A L MY R+AE+ F+TE L+ H + G
Sbjct: 2 PMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVF 61
Query: 171 LIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRI 230
++GP AYG K E GVHR+ R+ ++ R HTS +++ V P ++ + E SE +I
Sbjct: 62 EVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE-EDFERSE---KI 117
Query: 231 DTY 233
TY
Sbjct: 118 RTY 120
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal,
peptide release factor 1, ribosome, structural genomics,
BSGC structure funded by NIH; 2.65A {Thermotoga
maritima} (A:84-191,A:274-312)
Length = 147
Score = 155 bits (393), Expect = 8e-39
Identities = 48/120 (40%), Positives = 71/120 (59%)
Query: 114 SNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIK 173
S+ A +E+ G GG E+ +A L RMYTR+AE++ + E EIH+ + GI+ +K
Sbjct: 2 SDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVK 61
Query: 174 GPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTY 233
G NAYG LK E GVHR+ R+ +S R HTS +++ V P +++ I E +I TY
Sbjct: 62 GKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIIGTGERSEKIRTY 121
>2jy9_A Putative tRNA hydrolase domain; GFT protein structure,
structural genomics, PSI-2, protein structure
initiative; NMR {Salmonella typhimurium LT2} (A:)
Length = 148
Score = 121 bits (305), Expect = 1e-28
Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 34/149 (22%)
Query: 213 PVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRIT------------------- 253
+ + I++++ I RA GAGGQHVN T SA+ +
Sbjct: 2 IAISR--TVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIRASGLPEYYKQRLLTA 59
Query: 254 -----HIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESS------ 302
++++ Q+ RSQ N+ A L A + EL +++ A +
Sbjct: 60 SHHLISDDGVIIIKAQEFRSQELNREAAIARLVAVIKELTAEQKSRRATRPTRASKERRL 119
Query: 303 --KTEIGWGRQIRSYVLQPYQMVKDLRTN 329
K + + +R V +P + +
Sbjct: 120 SSKAQKSSVKALRGKVRRPLDLEHHHHHH 148
>2b3t_B RF-1, peptide chain release factor 1; translation
termination, methylation, conformational changes; HET:
SAH; 3.10A {Escherichia coli} (B:215-294)
Length = 80
Score = 114 bits (288), Expect = 1e-26
Identities = 46/73 (63%), Positives = 65/73 (89%)
Query: 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLR 281
+++ +D RIDT+R+SGAGGQHVNTTDSA+RITH+PTG+VV+CQ ERSQHKNKA+A ++L
Sbjct: 2 DVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLG 61
Query: 282 AKLYELELQKREE 294
A+++ E+ KR++
Sbjct: 62 ARIHAAEMAKRQQ 74
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB:
2b64_Y 3d5c_X (X:211-296)
Length = 86
Score = 114 bits (288), Expect = 2e-26
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 223 ISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRA 282
++ + RID RASG GGQ VNTTDSAVR+ H+PTG++V CQ RSQ KN+ +A +LR+
Sbjct: 2 LNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRS 61
Query: 283 KLYELELQKREEIANIGESSKTEIGWG 309
+L E++ + E ++ +IG G
Sbjct: 62 RLLEMKRAEEAERLR--KTRLAQIGTG 86
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta,
translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y*
3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:221-303)
Length = 83
Score = 113 bits (284), Expect = 4e-26
Identities = 44/81 (54%), Positives = 53/81 (65%)
Query: 223 ISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRA 282
+ + RID RASG GGQ VNTTDSAVR+ H+PTG+ V CQ RSQ KNK A +L+A
Sbjct: 2 LKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKA 61
Query: 283 KLYELELQKREEIANIGESSK 303
+LYELE +KREE
Sbjct: 62 RLYELERKKREEELKALRGEV 82
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
macromolecular mimicry, translation; 1.81A {Escherichia
coli} (A:232-314)
Length = 83
Score = 112 bits (282), Expect = 6e-26
Identities = 54/83 (65%), Positives = 63/83 (75%)
Query: 221 IEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNML 280
IEI+ +D RID YRASGAGGQHVN T+SAVRITHIPTG+V QCQ +RSQHKNK QA
Sbjct: 1 IEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAXKQX 60
Query: 281 RAKLYELELQKREEIANIGESSK 303
+AKLYE+E QK+ E +K
Sbjct: 61 KAKLYEVEXQKKNAEKQAXEDNK 83
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal,
peptide release factor 1, ribosome, structural genomics,
BSGC structure funded by NIH; 2.65A {Thermotoga
maritima} (A:192-273)
Length = 82
Score = 111 bits (278), Expect = 2e-25
Identities = 44/82 (53%), Positives = 62/82 (75%)
Query: 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLR 281
EI D +I+T+RASG GGQ+VN T+SAVRITH+PTG+VV CQ ERSQ++NK A +LR
Sbjct: 1 EIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILR 60
Query: 282 AKLYELELQKREEIANIGESSK 303
A+LY+L+ +++E + S+
Sbjct: 61 ARLYQLQKEQKEREISQKRKSQ 82
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release
factor 1 (RF-1), structural genomics, joint center for
structural genomics, JCSG; 2.34A {Streptococcus mutans}
(A:229-311)
Length = 83
Score = 111 bits (278), Expect = 2e-25
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLR 281
EI D R+D Y ASGAGGQ+VN +AVRI H+PT + V+ Q+ER+Q KN+ +A ++R
Sbjct: 1 EIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEXQEERTQQKNRDKAXKIIR 60
Query: 282 AKLYELELQKREEIANIGESSKTEIGWGRQI 312
A++ + Q ++ + + +
Sbjct: 61 ARVADHFAQIAQD--------EQDAERKSTV 83
>1j26_A Immature colon carcinoma transcript 1; peptide chain release
factors, RF-1, the GGQ motif, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
(A:)
Length = 112
Score = 108 bits (270), Expect = 1e-24
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 25/110 (22%)
Query: 208 SIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITH------------- 254
S I I R+SG GGQ+VN +S +
Sbjct: 2 SSGSSGEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVR 61
Query: 255 ------------IPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKR 292
+V+ + R Q +N A+ +R + E
Sbjct: 62 QKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPSS 111
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase,
structural genomics, PSI-2, protein structure
initiative; NMR {Pseudomonas syringae PV} (A:14-108)
Length = 95
Score = 96.1 bits (239), Expect = 6e-21
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 24/92 (26%)
Query: 227 DCRIDTYRASGAGGQHVNTTDSAVRIT------------------------HIPTGVVVQ 262
+ + RA GAGGQ+VN SA+ + +V++
Sbjct: 1 EIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLK 60
Query: 263 CQQERSQHKNKAQAWNMLRAKLYELELQKREE 294
QQ R+Q +N+A A L + +
Sbjct: 61 AQQYRTQEQNRADALLRLSELIVNAAKLEHHH 92
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
macromolecular mimicry, translation; 1.81A {Escherichia
coli} (A:1-120)
Length = 120
Score = 68.7 bits (168), Expect = 1e-12
Identities = 30/108 (27%), Positives = 51/108 (47%)
Query: 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKE 61
L+ + + L G D+D +RL +N + E P +W A+ L +ER L+ + + +
Sbjct: 13 DLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQ 72
Query: 62 IQDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEVEYKQFESLLS 109
+ L D LLELA+E DD E L ++ ++ +F S
Sbjct: 73 XKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRXFS 120
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta,
translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y*
3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:1-110)
Length = 110
Score = 65.9 bits (161), Expect = 7e-12
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKE 61
+L+++L LGG+FD RL L + EDP LW + A+ + +E L + +
Sbjct: 5 RLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRS 64
Query: 62 IQDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEVEYKQFESLLSG 110
++ L L L+E E+ ++ E L+ +++ ++LL+
Sbjct: 65 LESDLQGLLELMEELPAEEREALKPE----LEEAAKKLDELYHQTLLNF 109
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release
factor 1 (RF-1), structural genomics, joint center for
structural genomics, JCSG; 2.34A {Streptococcus mutans}
(A:1-116)
Length = 116
Score = 48.2 bits (115), Expect = 1e-06
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 1/105 (0%)
Query: 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKE 61
K+ + R L DP + + L RE + ++ +E
Sbjct: 5 KIHHHHHHXNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFXELSREEANSRETVAVYRE 64
Query: 62 IQDRLCDNLILLE-LALEEDDCSILQETSDNLQRIKLEVEYKQFE 105
+ + + E + D + + + L+ K+ E + +
Sbjct: 65 YKQVVQNIADAQEXIKDASGDPELEEXAKEELKNSKVAKEEYEEK 109
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB:
2b64_Y 3d5c_X (X:1-99,X:332-354)
Length = 122
Score = 44.1 bits (104), Expect = 3e-05
Identities = 17/92 (18%), Positives = 32/92 (34%)
Query: 17 DNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELA 76
D + L DP + ++ + L R + I I+E + L D L
Sbjct: 6 DRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL 65
Query: 77 LEEDDCSILQETSDNLQRIKLEVEYKQFESLL 108
+ + + + + L K +E + LL
Sbjct: 66 DDPELKEMAKAEREALLARKEALEKELERHLL 97
>6ldh_A M4 APO-lactate dehydrogenase;
oxidoreductase(CHOH(D)-NAD(A)); 2.00A {} (A:)
Length = 330
Score = 26.5 bits (57), Expect = 5.3
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 36 WQNVIEAKMLMRERQHLDNAISFIKEIQDRL 66
N+++ K+ E Q L + + + +IQ L
Sbjct: 298 ISNIVKMKLKPNEEQQLQKSATTLWDIQKDL 328
>1m1c_A GAG protein, major coat protein; dsRNA virus structure,
RNA-protein interaction, mRNA decapping, L-A virus,
QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus
l-a} (A:172-262)
Length = 91
Score = 26.4 bits (58), Expect = 6.2
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 100 EYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFK 151
Y + + YL+V T ++ N +L M ++W +
Sbjct: 11 SYPDWAQFSESFPSIDVPYLDVR---PLTVTE--VNFVLMMMSKWHRRTNLA 57
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP} (A:1-366,A:455-502)
Length = 414
Score = 25.9 bits (56), Expect = 9.3
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 17 DNAVQRLS------FLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNL 70
A+ LS FL + + +A ++ E D AI + E D +
Sbjct: 250 QKALNILSKDEDGFFLMVEGGQIDWAGHSNDAGTMLHELLKFDEAIQTVYEWAKDREDTI 309
Query: 71 ILL 73
+++
Sbjct: 310 VIV 312
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,639,821
Number of extensions: 114888
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 31
Length of query: 355
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 266
Effective length of database: 1,947,404
Effective search space: 518009464
Effective search space used: 518009464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)