RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62] (355 letters) >2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} (B:84-214,B:295-336) Length = 173 Score = 163 bits (413), Expect = 5e-41 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 5/143 (3%) Query: 96 KLEVEYKQFES--LLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTE 153 K E +Q + L D +A+LEV AG GG E+ +A L RMY+R+AE R+++ E Sbjct: 5 KSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVE 64 Query: 154 ALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYP 213 + +GE G K I G YG LK E G HR+ R+ +S R HTS ++ V P Sbjct: 65 IMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMP 124 Query: 214 VVDDS-IEIEISESDC--RIDTY 233 + D+ + + D R TY Sbjct: 125 ELPDAELRNLLGSGDRSDRNRTY 147 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:121-231,A:315-365) Length = 162 Score = 160 bits (407), Expect = 2e-40 Identities = 75/124 (60%), Positives = 90/124 (72%), Gaps = 1/124 (0%) Query: 110 GEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSAT 169 GE DS D YL++ AG+GGTE+QDWA+ L R Y RWAE R FKTE +E +GE AGIKS T Sbjct: 1 GEYDSADCYLDIQAGSGGTEAQDWASXLERXYLRWAESRGFKTEIIEESEGEVAGIKSVT 60 Query: 170 LLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCR 229 + I G AYGWL+ E GVHRLVR SP+DS RRHTSFSS +VYP VDD I+ +I + Sbjct: 61 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDSDIGWGS-Q 119 Query: 230 IDTY 233 I +Y Sbjct: 120 IRSY 123 Score = 72.9 bits (179), Expect = 5e-14 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 300 ESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352 + ++IGWG QIRSYVL +KDLRT +E + VLDG LD F++A+L Sbjct: 108 DDIDSDIGWGSQIRSYVLDDS-RIKDLRTGVETRNTQAVLDGSLDQFIEASLK 159 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:117-228,A:312-349) Length = 150 Score = 159 bits (403), Expect = 6e-40 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 110 GEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSAT 169 D + LE+ AGG E+ +A LL Y ++AE + +K E E G+K Sbjct: 2 DPNDDKNIILEIRGAAGGDEAALFAGDLLNXYQKYAENQGWKFEVXEASANGVGGLKEVV 61 Query: 170 LLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCR 229 + G + Y LK E G HR+ R+ +S R HTS +++ V P V++ +E + R Sbjct: 62 AXVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVXPEVEE-VEYGTGDRSER 120 Query: 230 IDTY 233 I TY Sbjct: 121 IRTY 124 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:111-220,1:304-365) Length = 172 Score = 158 bits (401), Expect = 9e-40 Identities = 62/121 (51%), Positives = 84/121 (69%), Gaps = 1/121 (0%) Query: 113 DSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLI 172 +A L + GAGGTE+ DWA MLLRMYTR+AE++ F+ E +++ G EAGI A +L+ Sbjct: 2 AEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILV 61 Query: 173 KGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDT 232 KG NAYG L E GVHRLVR SP+D++ RRHTSF+ + V P VD+ +E+ I +I + Sbjct: 62 KGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVPIEWGS-QIRS 120 Query: 233 Y 233 Y Sbjct: 121 Y 121 Score = 66.4 bits (162), Expect = 5e-12 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 300 ESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352 E + I WG QIRSYVL VKD RT + + P +VLDGDL D + A L Sbjct: 106 EEVEVPIEWGSQIRSYVL-DKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLE 157 >3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X (X:100-210,X:297-331) Length = 146 Score = 158 bits (401), Expect = 1e-39 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 111 EADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATL 170 D DA +E+ AG GG E+ +A L MY R+AE+ F+TE L+ H + G Sbjct: 2 PMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVF 61 Query: 171 LIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRI 230 ++GP AYG K E GVHR+ R+ ++ R HTS +++ V P ++ + E SE +I Sbjct: 62 EVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE-EDFERSE---KI 117 Query: 231 DTY 233 TY Sbjct: 118 RTY 120 >1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:84-191,A:274-312) Length = 147 Score = 155 bits (393), Expect = 8e-39 Identities = 48/120 (40%), Positives = 71/120 (59%) Query: 114 SNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIK 173 S+ A +E+ G GG E+ +A L RMYTR+AE++ + E EIH+ + GI+ +K Sbjct: 2 SDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVK 61 Query: 174 GPNAYGWLKGEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTY 233 G NAYG LK E GVHR+ R+ +S R HTS +++ V P +++ I E +I TY Sbjct: 62 GKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIIGTGERSEKIRTY 121 >2jy9_A Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:) Length = 148 Score = 121 bits (305), Expect = 1e-28 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 34/149 (22%) Query: 213 PVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRIT------------------- 253 + + I++++ I RA GAGGQHVN T SA+ + Sbjct: 2 IAISR--TVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIRASGLPEYYKQRLLTA 59 Query: 254 -----HIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESS------ 302 ++++ Q+ RSQ N+ A L A + EL +++ A + Sbjct: 60 SHHLISDDGVIIIKAQEFRSQELNREAAIARLVAVIKELTAEQKSRRATRPTRASKERRL 119 Query: 303 --KTEIGWGRQIRSYVLQPYQMVKDLRTN 329 K + + +R V +P + + Sbjct: 120 SSKAQKSSVKALRGKVRRPLDLEHHHHHH 148 >2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} (B:215-294) Length = 80 Score = 114 bits (288), Expect = 1e-26 Identities = 46/73 (63%), Positives = 65/73 (89%) Query: 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLR 281 +++ +D RIDT+R+SGAGGQHVNTTDSA+RITH+PTG+VV+CQ ERSQHKNKA+A ++L Sbjct: 2 DVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLG 61 Query: 282 AKLYELELQKREE 294 A+++ E+ KR++ Sbjct: 62 ARIHAAEMAKRQQ 74 >3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X (X:211-296) Length = 86 Score = 114 bits (288), Expect = 2e-26 Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 2/87 (2%) Query: 223 ISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRA 282 ++ + RID RASG GGQ VNTTDSAVR+ H+PTG++V CQ RSQ KN+ +A +LR+ Sbjct: 2 LNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRS 61 Query: 283 KLYELELQKREEIANIGESSKTEIGWG 309 +L E++ + E ++ +IG G Sbjct: 62 RLLEMKRAEEAERLR--KTRLAQIGTG 86 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:221-303) Length = 83 Score = 113 bits (284), Expect = 4e-26 Identities = 44/81 (54%), Positives = 53/81 (65%) Query: 223 ISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRA 282 + + RID RASG GGQ VNTTDSAVR+ H+PTG+ V CQ RSQ KNK A +L+A Sbjct: 2 LKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKA 61 Query: 283 KLYELELQKREEIANIGESSK 303 +LYELE +KREE Sbjct: 62 RLYELERKKREEELKALRGEV 82 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:232-314) Length = 83 Score = 112 bits (282), Expect = 6e-26 Identities = 54/83 (65%), Positives = 63/83 (75%) Query: 221 IEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNML 280 IEI+ +D RID YRASGAGGQHVN T+SAVRITHIPTG+V QCQ +RSQHKNK QA Sbjct: 1 IEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAXKQX 60 Query: 281 RAKLYELELQKREEIANIGESSK 303 +AKLYE+E QK+ E +K Sbjct: 61 KAKLYEVEXQKKNAEKQAXEDNK 83 >1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:192-273) Length = 82 Score = 111 bits (278), Expect = 2e-25 Identities = 44/82 (53%), Positives = 62/82 (75%) Query: 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLR 281 EI D +I+T+RASG GGQ+VN T+SAVRITH+PTG+VV CQ ERSQ++NK A +LR Sbjct: 1 EIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILR 60 Query: 282 AKLYELELQKREEIANIGESSK 303 A+LY+L+ +++E + S+ Sbjct: 61 ARLYQLQKEQKEREISQKRKSQ 82 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:229-311) Length = 83 Score = 111 bits (278), Expect = 2e-25 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%) Query: 222 EISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLR 281 EI D R+D Y ASGAGGQ+VN +AVRI H+PT + V+ Q+ER+Q KN+ +A ++R Sbjct: 1 EIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEXQEERTQQKNRDKAXKIIR 60 Query: 282 AKLYELELQKREEIANIGESSKTEIGWGRQI 312 A++ + Q ++ + + + Sbjct: 61 ARVADHFAQIAQD--------EQDAERKSTV 83 >1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Length = 112 Score = 108 bits (270), Expect = 1e-24 Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 25/110 (22%) Query: 208 SIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITH------------- 254 S I I R+SG GGQ+VN +S + Sbjct: 2 SSGSSGEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVR 61 Query: 255 ------------IPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKR 292 +V+ + R Q +N A+ +R + E Sbjct: 62 QKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPSS 111 >2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae PV} (A:14-108) Length = 95 Score = 96.1 bits (239), Expect = 6e-21 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 24/92 (26%) Query: 227 DCRIDTYRASGAGGQHVNTTDSAVRIT------------------------HIPTGVVVQ 262 + + RA GAGGQ+VN SA+ + +V++ Sbjct: 1 EIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLK 60 Query: 263 CQQERSQHKNKAQAWNMLRAKLYELELQKREE 294 QQ R+Q +N+A A L + + Sbjct: 61 AQQYRTQEQNRADALLRLSELIVNAAKLEHHH 92 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:1-120) Length = 120 Score = 68.7 bits (168), Expect = 1e-12 Identities = 30/108 (27%), Positives = 51/108 (47%) Query: 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKE 61 L+ + + L G D+D +RL +N + E P +W A+ L +ER L+ + + + Sbjct: 13 DLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQ 72 Query: 62 IQDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEVEYKQFESLLS 109 + L D LLELA+E DD E L ++ ++ +F S Sbjct: 73 XKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRXFS 120 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:1-110) Length = 110 Score = 65.9 bits (161), Expect = 7e-12 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKE 61 +L+++L LGG+FD RL L + EDP LW + A+ + +E L + + Sbjct: 5 RLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRS 64 Query: 62 IQDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEVEYKQFESLLSG 110 ++ L L L+E E+ ++ E L+ +++ ++LL+ Sbjct: 65 LESDLQGLLELMEELPAEEREALKPE----LEEAAKKLDELYHQTLLNF 109 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:1-116) Length = 116 Score = 48.2 bits (115), Expect = 1e-06 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 1/105 (0%) Query: 2 KLSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKE 61 K+ + R L DP + + L RE + ++ +E Sbjct: 5 KIHHHHHHXNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFXELSREEANSRETVAVYRE 64 Query: 62 IQDRLCDNLILLE-LALEEDDCSILQETSDNLQRIKLEVEYKQFE 105 + + + E + D + + + L+ K+ E + + Sbjct: 65 YKQVVQNIADAQEXIKDASGDPELEEXAKEELKNSKVAKEEYEEK 109 >3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X (X:1-99,X:332-354) Length = 122 Score = 44.1 bits (104), Expect = 3e-05 Identities = 17/92 (18%), Positives = 32/92 (34%) Query: 17 DNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELA 76 D + L DP + ++ + L R + I I+E + L D L Sbjct: 6 DRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL 65 Query: 77 LEEDDCSILQETSDNLQRIKLEVEYKQFESLL 108 + + + + + L K +E + LL Sbjct: 66 DDPELKEMAKAEREALLARKEALEKELERHLL 97 >6ldh_A M4 APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.00A {} (A:) Length = 330 Score = 26.5 bits (57), Expect = 5.3 Identities = 8/31 (25%), Positives = 16/31 (51%) Query: 36 WQNVIEAKMLMRERQHLDNAISFIKEIQDRL 66 N+++ K+ E Q L + + + +IQ L Sbjct: 298 ISNIVKMKLKPNEEQQLQKSATTLWDIQKDL 328 >1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein interaction, mRNA decapping, L-A virus, QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus l-a} (A:172-262) Length = 91 Score = 26.4 bits (58), Expect = 6.2 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%) Query: 100 EYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFK 151 Y + + YL+V T ++ N +L M ++W + Sbjct: 11 SYPDWAQFSESFPSIDVPYLDVR---PLTVTE--VNFVLMMMSKWHRRTNLA 57 >3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP} (A:1-366,A:455-502) Length = 414 Score = 25.9 bits (56), Expect = 9.3 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 17 DNAVQRLS------FLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNL 70 A+ LS FL + + +A ++ E D AI + E D + Sbjct: 250 QKALNILSKDEDGFFLMVEGGQIDWAGHSNDAGTMLHELLKFDEAIQTVYEWAKDREDTI 309 Query: 71 ILL 73 +++ Sbjct: 310 VIV 312 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.132 0.385 Gapped Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,639,821 Number of extensions: 114888 Number of successful extensions: 344 Number of sequences better than 10.0: 1 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 31 Length of query: 355 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 266 Effective length of database: 1,947,404 Effective search space: 518009464 Effective search space used: 518009464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)