RPSBLAST alignment of GI: 254780753 and protein with PDBid: 1rq0
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342
Score = 212 bits (540), Expect = 1e-55
Identities = 124/335 (37%), Positives = 189/335 (56%), Gaps = 18/335 (5%)
Query: 21 QRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEED 80
++ + P L + K E ++ I+ I +R+ + +EL EE
Sbjct: 3 EKKKEIEKLLARPDLTPE--QMKNYGMEYAKIEE----IENITNRIKETQEFIELLREEG 56
Query: 81 DCSILQETSDNLQRIKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRM 140
+ E +L+ Y++ LLS E S+ A +E+ G GG E+ +A L RM
Sbjct: 57 E----NELEIEKYEKELDQLYQELLFLLSPE-ASDKAIVEIRPGTGGEEAALFARDLFRM 111
Query: 141 YTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNS 200
YTR+AE++ + E EIH+ + GI+ +KG NAYG LK E GVHR+ R+ +S
Sbjct: 112 YTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGG 171
Query: 201 RRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVV 260
R HTS +++ V P +++ +IEI D +I+T+RASG GGQ+VN T+SAVRITH+PTG+V
Sbjct: 172 RIHTSTATVAVLPEIEE-KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIV 230
Query: 261 VQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGR---QIRSYVL 317
V CQ ERSQ++NK A +LRA+LY+L+ +++E I + K++IG G +IR+Y
Sbjct: 231 VSCQNERSQYQNKQTALRILRARLYQLQKEQKER--EISQKRKSQIGTGERSEKIRTYNF 288
Query: 318 QPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352
P V D R N ++LDGDLD+ + +
Sbjct: 289 -PQNRVTDHRINYTSYRLQEILDGDLDEIISKLIE 322