RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62] (355 letters) >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Score = 315 bits (808), Expect = 4e-87 Identities = 184/349 (52%), Positives = 239/349 (68%), Gaps = 1/349 (0%) Query: 3 LSRQLNCLGGLFDWDNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEI 62 L+ + + L G D+D +RL +N + E P +W A+ L +ER L+ + + ++ Sbjct: 11 LTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQM 70 Query: 63 QDRLCDNLILLELALEEDDCSILQETSDNLQRIKLEVEYKQFESLLSGEADSNDAYLEVH 122 + L D LLELA+E DD E L ++ ++ +F + SGE DS D YL++ Sbjct: 71 KQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQ 130 Query: 123 AGAGGTESQDWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLK 182 AG+GGTE+QDWA+ML RMY RWAE R FKTE +E +GE AGIKS T+ I G AYGWL+ Sbjct: 131 AGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLR 190 Query: 183 GEQGVHRLVRISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQH 242 E GVHRLVR SP+DS RRHTSFSS +VYP VDD I+IEI+ +D RID YRASGAGGQH Sbjct: 191 TETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQH 250 Query: 243 VNTTDSAVRITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESS 302 VN T+SAVRITHIPTG+V QCQ +RSQHKNK QA ++AKLYE+E+QK+ E + Sbjct: 251 VNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDN 310 Query: 303 KTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATL 351 K++IGWG QIRSYVL + +KDLRT +E + VLDG LD F++A+L Sbjct: 311 KSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASL 358 >d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Score = 236 bits (603), Expect = 2e-63 Identities = 113/334 (33%), Positives = 176/334 (52%), Gaps = 3/334 (0%) Query: 21 QRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEED 80 +R + D + + L RE L + + Q D + + + Sbjct: 4 ERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPE 63 Query: 81 DCSILQETSDNLQRIKLEVEYKQFESLLSGEAD-SNDAYLEVHAGAGGTESQDWANMLLR 139 + Q+ + ++E + LL + D +A+LEV AG GG E+ +A L R Sbjct: 64 MREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFR 123 Query: 140 MYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSN 199 MY+R+AE R+++ E + +GE G K I G YG LK E G HR+ R+ +S Sbjct: 124 MYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQ 183 Query: 200 SRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGV 259 R HTS ++ V P + D+ +++ +D RIDT+R+SGAGGQHVNTTDSA+RITH+PTG+ Sbjct: 184 GRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGI 243 Query: 260 VVQCQQERSQHKNKAQAWNMLRAKLYELELQKR-EEIANIGESSKTEIGWGRQIRSYVLQ 318 VV+CQ ERSQHKNKA+A ++L A+++ E+ KR + A+ + + R+Y Sbjct: 244 VVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNF- 302 Query: 319 PYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352 P V D R N+ +V++G LD ++ + Sbjct: 303 PQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQ 336 >d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Score = 209 bits (533), Expect = 3e-55 Identities = 122/335 (36%), Positives = 184/335 (54%), Gaps = 18/335 (5%) Query: 21 QRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNLILLELALEED 80 ++ + P L + K E ++ I+ I +R+ + +EL EE Sbjct: 3 EKKKEIEKLLARPDLTPE--QMKNYGMEYAKIEE----IENITNRIKETQEFIELLREEG 56 Query: 81 DCSILQETSDNLQRIKLEVEYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRM 140 + E +L+ Y++ LLS E S+ A +E+ G GG E+ +A L RM Sbjct: 57 E----NELEIEKYEKELDQLYQELLFLLSPE-ASDKAIVEIRPGTGGEEAALFARDLFRM 111 Query: 141 YTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNS 200 YTR+AE++ + E EIH+ + GI+ +KG NAYG LK E GVHR+ R+ +S Sbjct: 112 YTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGG 171 Query: 201 RRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVV 260 R HTS +++ + +IEI D +I+T+RASG GGQ+VN T+SAVRITH+PTG+V Sbjct: 172 RIHTSTATVA-VLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIV 230 Query: 261 VQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWGR---QIRSYVL 317 V CQ ERSQ++NK A +LRA+LY+L+ K ++ I + K++IG G +IR+Y Sbjct: 231 VSCQNERSQYQNKQTALRILRARLYQLQ--KEQKEREISQKRKSQIGTGERSEKIRTYNF 288 Query: 318 QPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352 P V D R N ++LDGDLD+ + + Sbjct: 289 -PQNRVTDHRINYTSYRLQEILDGDLDEIISKLIE 322 >d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Score = 81.2 bits (200), Expect = 1e-16 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 25/99 (25%) Query: 213 PVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHI----------------- 255 I I R+SG GGQ+VN +S + Sbjct: 7 GEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIAL 66 Query: 256 --------PTGVVVQCQQERSQHKNKAQAWNMLRAKLYE 286 +V+ + R Q +N A+ +R + E Sbjct: 67 THKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105 >d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118 Score = 29.3 bits (66), Expect = 0.57 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 25/92 (27%) Query: 289 LQKREEIANI---------GESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSP---- 335 LQ + + +I E K + R+I+ ++ QP+Q+ + ++ K P Sbjct: 21 LQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKET 80 Query: 336 ----SDVLDGDLDD------FMKATL--AIKK 355 +L G+ D +M + A+ K Sbjct: 81 IKGFQQILAGEYDHLPEQAFYMVGPIEEAVAK 112 >d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 108 Score = 27.7 bits (62), Expect = 1.4 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 17/74 (22%) Query: 289 LQKREEIANI---------GESSKTEIGWGRQIRSYVLQPYQMVKDLRTNIEKTSP---- 335 LQ+ +E+ +I E + + R+I ++ QP+ + + + K Sbjct: 18 LQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAET 77 Query: 336 ----SDVLDGDLDD 345 +L G+LD Sbjct: 78 IRGFQLILSGELDS 91 >d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces cerevisiae virus L-A [TaxId: 11008]} Length = 651 Score = 26.9 bits (59), Expect = 2.6 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%) Query: 100 EYKQFESLLSGEADSNDAYLEVHAGAGGTESQDWANMLLRMYTRWAEKRKFK 151 Y + + YL+V T ++ N +L M ++W + Sbjct: 182 SYPDWAQFSESFPSIDVPYLDVR---PLTVTE--VNFVLMMMSKWHRRTNLA 228 >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 Score = 26.4 bits (57), Expect = 4.1 Identities = 6/35 (17%), Positives = 14/35 (40%) Query: 36 WQNVIEAKMLMRERQHLDNAISFIKEIQDRLCDNL 70 + E++ L + +I++ D + D L Sbjct: 129 VLAETTLDLTTDEQEKLLQSRDYIQQRFDEIVDTL 163 >d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli [TaxId: 562]} Length = 449 Score = 25.1 bits (54), Expect = 8.3 Identities = 6/32 (18%), Positives = 12/32 (37%) Query: 41 EAKMLMRERQHLDNAISFIKEIQDRLCDNLIL 72 + E LD A+ E + + L++ Sbjct: 334 NPCGQIGETVDLDEAVQRALEFAKKEGNTLVI 365 >d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Score = 25.1 bits (54), Expect = 8.6 Identities = 4/29 (13%), Positives = 12/29 (41%), Gaps = 5/29 (17%) Query: 46 MRERQHLDNAISFIKEIQDRLCDNLILLE 74 +R++ + I+ Q + L ++ Sbjct: 9 IRQQ-----MEALIRRKQAEITQGLESID 32 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.316 0.132 0.385 Gapped Lambda K H 0.267 0.0695 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,301,135 Number of extensions: 58594 Number of successful extensions: 158 Number of sequences better than 10.0: 1 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 13 Length of query: 355 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 269 Effective length of database: 1,226,816 Effective search space: 330013504 Effective search space used: 330013504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (24.3 bits)