RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780754|ref|YP_003065167.1| inorganic
polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
2.70A {Homo sapiens}
Length = 365
Score = 145 bits (366), Expect = 1e-35
Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 38/252 (15%)
Query: 34 SEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMN------EYCIENLVE-- 85
S + D I+ LGGDG +L + + P+ + GS+GFL + + ++E
Sbjct: 106 SNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGN 165
Query: 86 -------RLSVAVECTFHPLKMTV-------------FDYDNSICAENILAINEVSIIRK 125
RL V V K V D D A +NEV I R
Sbjct: 166 AAVVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRG 225
Query: 126 PGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLT 185
P + ++V +D + + + DG++VSTP GSTAY +A ++ +++T
Sbjct: 226 PSS----YLSNVDVYLDGHL-ITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMIT 280
Query: 186 PVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD---RLAIEPVSRINVTQSS-DI 241
P+ P + ++P V ++I + + + D R I I++T S +
Sbjct: 281 PICPHSL-SFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPL 339
Query: 242 TMRILSDSHRSW 253
+ D W
Sbjct: 340 PSICVRDPVSDW 351
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A*
Length = 272
Score = 136 bits (343), Expect = 5e-33
Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 21/264 (7%)
Query: 7 KIHFKASNAKKAQEAYDKFVKIYGNSTSE----EADVIVVLGGDGFMLQSFHQSKEY--D 60
K + +K+ + +G E E ++++ +GGDG L +FHQ +E +
Sbjct: 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDE 61
Query: 61 KPIYGMNCGSVGFLMNEY---CIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAI 117
G++ G +GF + + + + +PL T Y LA+
Sbjct: 62 IAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLAL 121
Query: 118 NEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPL 177
NE ++ G + V + + DGL +STP G+TAYN S G ++
Sbjct: 122 NESTVKSSGGP-------FVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHP 174
Query: 178 ESRHLLLTPVSPFKPRRWHGA----ILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRI 233
+ LT ++ R + + P ++ +Q + K + + V I
Sbjct: 175 SIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEI 234
Query: 234 NVTQSSDITMRILSDSHRSWSDRI 257
S+ + + R+
Sbjct: 235 RYEVSAK-KIHFARFRSFPFWRRV 257
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
structural genomics, NADP, PSI, protein structure
initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Length = 278
Score = 115 bits (288), Expect = 1e-26
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 23/244 (9%)
Query: 13 SNAKKAQEAYDKF---VKIYGNSTS--EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67
+ K+ +EA + V+++ + E D IV +GGDG +L+ + K PI+G+N
Sbjct: 40 GHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-RCPPIFGIN 98
Query: 68 CGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127
G VG L + E V ++ ++ F + ++LA+NE++++ +
Sbjct: 99 TGRVGLLTHAS-----PENFEVELKKAVEKFEVERFPRVSCSAMPDVLALNEIAVLSRKP 153
Query: 128 QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187
+ D V + + CDG +V+T IGST Y FSA GP++ +L P+
Sbjct: 154 AKMIDV-----ALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPI 208
Query: 188 SPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD-RLAIEPVSRINVTQSSDITMRIL 246
+PF W ++ + IE+ I AD + +++ I + +S +
Sbjct: 209 APF-RFGWKPYVVSMERKIEVIA-----EKAIVVADGQKSVDFDGEITIEKSEFPAVFFK 262
Query: 247 SDSH 250
++
Sbjct: 263 NEKR 266
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima}
Length = 258
Score = 96.5 bits (239), Expect = 5e-21
Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 18/250 (7%)
Query: 11 KASNAKKAQEAYDKFVKIYGNSTSE---EADVIVVLGGDGFMLQSFHQSKEYDKPIYGMN 67
K K + + + V +G + + AD+IVV+GGDG +L++ ++ + P+ G
Sbjct: 13 KEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAAD-GTPMVGFK 71
Query: 68 CGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127
G +GF + Y ++ + L F ++ + A+N+V++ R
Sbjct: 72 AGRLGF-LTSYTLDEIDRFLEDLRNWNFREETRWFIQIESELGNHL--ALNDVTLERDLS 128
Query: 128 QNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPV 187
++EV+V+ + DG+V+STP GSTAY+ S GPI+ E L ++P+
Sbjct: 129 GKM----VEIEVEVEHHSSMWF-FADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPI 183
Query: 188 SPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSDITMRILS 247
+P ++P++ + ++ QR + D + RI V + S +RIL
Sbjct: 184 APQF-FLTRSVVIPSNFKVVVES----QRDINMLVDGVLTGKTKRIEVKK-SRRYVRILR 237
Query: 248 DSHRSWSDRI 257
+ I
Sbjct: 238 PPEYDYVTVI 247
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
structural genomics, PSI, protein structure initiative;
2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
1u0r_A 1y3i_A* 1y3h_A
Length = 307
Score = 94.3 bits (233), Expect = 3e-20
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 13/228 (5%)
Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEY--CIENLVERLSVAVE 92
+ ++++VLGGDG L++ ++ P+ G+N G +GFL I+ ++E +
Sbjct: 74 DGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDY 133
Query: 93 CTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVC 152
L + V A+NEVS+ + P L V D + C
Sbjct: 134 RVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVLGV-----VVEIDGRPVSAFGC 188
Query: 153 DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212
DG++VSTP GSTAY FSA GP+L + +L+ P + + + I I++ E
Sbjct: 189 DGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRP-MVTSPEATIAIEI-E 246
Query: 213 HKQRPVIATAD---RLAIEPVSRINVTQSSDITMRILSDSHRSWSDRI 257
+ D + I SR+ VT+ +++ ++DR+
Sbjct: 247 ADGHDALVFCDGRREMLIPAGSRLEVTR-CVTSVKWARLDSAPFTDRL 293
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium LT2}
Length = 292
Score = 93.8 bits (232), Expect = 3e-20
Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 13/228 (5%)
Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEY--CIENLVERLSVAVE 92
++AD+ VV+GGDG ML + YD + G+N G++GFL + + +
Sbjct: 62 QQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRY 121
Query: 93 CTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVC 152
+ + AINEV + + + D+
Sbjct: 122 ISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMI-----EFEVYIDETFAFSQRS 176
Query: 153 DGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLE 212
DGL++STP GSTAY+ SA GPIL + L P+ P ++ + I ++
Sbjct: 177 DGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTL-SARPLVINSSSTIRLRF-S 234
Query: 213 HKQRPVIATAD---RLAIEPVSRINVTQSSDITMRILSDSHRSWSDRI 257
H++ + + D L I+ + + + D + ++ S+ + +
Sbjct: 235 HRRSDLEISCDSQIALPIQEGEDVLIRR-CDYHLNLIHPKDYSYFNTL 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.5 bits (92), Expect = 9e-04
Identities = 63/398 (15%), Positives = 99/398 (24%), Gaps = 205/398 (51%)
Query: 1 MDRNIQKIH----FKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDG-----F--- 48
R K F+A A ++ + GG G F
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNA--------QLV-----------AIFGGQGNTDDYFEEL 173
Query: 49 --------------------MLQSFHQSKEYDKPIY--GMN----------CGSVGFLMN 76
L ++ + ++ G+N +L
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-- 231
Query: 77 EYCIENLVERLSVAVEC-------------TFHPLKMTV--------------------- 102
LS+ + C T L T
Sbjct: 232 ----------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 103 ----------FDYDNSICAENIL------------------AINEVSI------------ 122
F + + A +L +I E S+
Sbjct: 282 AIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 123 IRKPGQNQLVQAAKLEVKVDDQV--RLPE-------LVCDG---LVVSTPIGSTAYNFS- 169
I Q Q+ Q ++ LP LV +G LVVS P S Y +
Sbjct: 341 ISNLTQEQV-Q------DYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSL-YGLNL 391
Query: 170 ------ALGPI----LPLESRHLLLT----PVS-PFKPRRWHGAIL--PNDVMIEIQVLE 212
A + +P R L + PV+ PF H +L +D + +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-----HSHLLVPASD-----LINK 441
Query: 213 H-KQRPVIATADRLAIEPVSRINVTQSSDITMRILSDS 249
+ V A + I PV + SD +R+LS S
Sbjct: 442 DLVKNNVSFNAKDIQI-PV--YDTFDGSD--LRVLSGS 474
Score = 39.2 bits (91), Expect = 0.001
Identities = 46/289 (15%), Positives = 84/289 (29%), Gaps = 110/289 (38%)
Query: 9 HFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSK-EYDKPIYGMN 67
F AS + ++F KI T +GF + E
Sbjct: 27 FFIASQLQ------EQFNKILPEPT------------EGFAADDEPTTPAEL-------- 60
Query: 68 CGS-VGFLMNEYCIENLVERLSV------AVECTFHPLKMTVFDYDNSI--CAENILAIN 118
G +G++ + + + V E + L+ N I A +L N
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LE------GNDIHALAAKLLQEN 112
Query: 119 EV------SIIR--------------KPGQNQLVQAAKLEVKVDDQVRL----------- 147
+ +I+ K + L +A + +L
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-----EGNAQLVAIFGGQGNTD 167
Query: 148 ---PELVCDGLVVSTPIGSTAYNFSALGPILPLESRHL--LLTPVSPFKPRRWHGAILPN 202
EL + T Y+ +G ++ + L L+ + G L
Sbjct: 168 DYFEELR--------DLYQT-YH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQG--L-- 213
Query: 203 DVMIEIQVLEHK-QRPVIATADRLAIEPVS--RINVTQ--SSDITMRIL 246
+++ + LE+ P D L P+S I V Q +T ++L
Sbjct: 214 NIL---EWLENPSNTP---DKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Score = 30.7 bits (69), Expect = 0.36
Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 65/243 (26%)
Query: 8 IHFKASNAKKAQEAYDKFV------------KIYGNSTSEEADVIVVLGGDGFMLQSFHQ 55
IHF K+ +E Y + KI+ +E + G +
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLL-----S 1727
Query: 56 SKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTF--HPLKMTVFDYDNSICAEN 113
+ ++ +P LM + E+L + + + TF H L +Y +
Sbjct: 1728 ATQFTQPALT--------LMEKAAFEDLKSKGLIPADATFAGHSLG----EYAALASLAD 1775
Query: 114 ILAINE-VSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALG 172
+++I V ++ G V + E+ + G++ P G A +FS
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNY---------GMIAINP-GRVAASFSQ-- 1823
Query: 173 PILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEI--QVLEHKQRPVIATADRLAIEPV 230
E+ ++ V K W ++EI +E++Q +A D A++ V
Sbjct: 1824 -----EALQYVVERVG--KRTGW---------LVEIVNYNVENQQ--YVAAGDLRALDTV 1865
Query: 231 SRI 233
+ +
Sbjct: 1866 TNV 1868
Score = 27.2 bits (60), Expect = 3.6
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 42/112 (37%)
Query: 81 ENLVERLSVA-VECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEV 139
+ + + L V +++ V+D + + +R + +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFD---GSD---------LRVLSGS-IS------- 476
Query: 140 KVDDQVRLPELVCDGLVVSTPIG-STAYNFSA-----LGP-----ILPLESR 180
+V D ++ P+ T F A GP + L R
Sbjct: 477 --------ERIV-D-CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.7 bits (68), Expect = 0.35
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 21/56 (37%)
Query: 219 IATADRLAIEPVS----------RINVTQSSDITMRILSDSHR--------SWSDR 256
IA ADRL EP S R+ Q D +++ R W+ R
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRL---QELDAASKVMEQEWREKAKKDLEEWNQR 126
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.6 bits (65), Expect = 0.69
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 119 EVSIIRKPGQNQLVQAAKLEVKVDDQVRLPEL 150
E ++K +QA+ L++ DD P L
Sbjct: 18 EKQALKK------LQAS-LKLYADDSA--PAL 40
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein,
metal-binding, oxygen binding; 4.00A {Megathura
crenulata}
Length = 491
Score = 28.3 bits (63), Expect = 1.8
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 23 DKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIEN 82
++K +S E A V+LGG M ++ + +D I
Sbjct: 311 KVYIKSGTDSDDEYAGSFVILGGAKEMPWAYERLYRFD-------------------ITE 351
Query: 83 LVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVD 142
V L++ + + + YD++ ++L I+R+P +E+ +
Sbjct: 352 TVHNLNLTDD-HVK-FRFDLKKYDHTELDASVLP--APIIVRRPNN---AVFDIIEIPIG 404
Query: 143 DQVRLPELV 151
V LP V
Sbjct: 405 KDVNLPPKV 413
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
riken structural genomics/proteomics initiative, RSGI;
2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Length = 582
Score = 27.6 bits (61), Expect = 3.2
Identities = 25/182 (13%), Positives = 48/182 (26%), Gaps = 17/182 (9%)
Query: 35 EEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEYCIENLVERLSVAVECT 94
EE + G H+ +Y+ I S F + +Y + R + +
Sbjct: 71 EELRRKALELG-------IHRMLDYNGIIEV---DSGSFQLMKYGSIEVSNREIIEFQHR 120
Query: 95 FHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDG 154
T D A A+ E+ I + +L
Sbjct: 121 IGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYA 180
Query: 155 LVVSTPIGSTAYNFSALGPILPLESRHLLLTPVS-------PFKPRRWHGAILPNDVMIE 207
+ + + + P+L ++ V P +P GA P +
Sbjct: 181 ARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALA 240
Query: 208 IQ 209
+
Sbjct: 241 VA 242
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 27.5 bits (60), Expect = 3.2
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 2/90 (2%)
Query: 169 SALGPILPLESRHLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIE 228
S L P R+ ++ V H + +++ +K+ +
Sbjct: 12 SGLVPRGSHMIRNRVMNSV--VNKYLLHNRSIMFKNDQDVERFFYKREIENRKKHKQPST 69
Query: 229 PVSRINVTQSSDITMRILSDSHRSWSDRIL 258
+ N+ + S M++ + R D+ +
Sbjct: 70 LNVKANLEKLSLDDMQVFRFNFRHQIDKKI 99
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase);
streptomycin; 3.10A {Streptomyces griseus} SCOP:
d.126.1.2
Length = 348
Score = 27.2 bits (59), Expect = 3.8
Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 6/112 (5%)
Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60
I + K+ +E + V V G
Sbjct: 44 SQEQIPSGAYPDRVLKETEEELHVLAAEL-----TKLGVTVRRPGPRDHSALIKTPDWET 98
Query: 61 KPIYGMNCGSVGFLMNEYCIE-NLVERLSVAVECTFHPLKMTVFDYDNSICA 111
+ + + IE + R + L + F + +
Sbjct: 99 DGFHDYCPRDGLLSVGQTIIETPMALRSRFLESLAYKDLLLEYFASGSRWLS 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 27.0 bits (60), Expect = 4.0
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 4 NIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEA 37
+ + +AQ+ + Y S+ A
Sbjct: 81 KLGLSQYGEGKNTEAQQTLQQVATQYPG--SDAA 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 27.3 bits (59), Expect = 4.2
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 4 NIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVI 40
+ ++ AQ+ + I G S SE+ +
Sbjct: 200 AQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAAL 236
>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein,
jelly roll, viral beta barrel, viral protein; 1.65A
{Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1
PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A
1w8x_A
Length = 394
Score = 27.0 bits (59), Expect = 4.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 60 DKPIYGMNCGSVGFLMN 76
DKPIY + G+VGF++N
Sbjct: 346 DKPIYTLQYGNVGFVVN 362
>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, unknown function; 1.20A {Bacillus subtilis}
SCOP: b.174.1.1
Length = 80
Score = 27.0 bits (59), Expect = 4.4
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 109 ICAENILAINEVSIIRKPGQNQLVQAAKLEVKVDDQVRLPEL 150
IC EN+L EVS ++ G + + + +E ++ + LPEL
Sbjct: 33 IC-ENLLLSKEVSFLKADGSVENFKLSDMEYEITNTEELPEL 73
>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A
{Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 26.8 bits (58), Expect = 5.6
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 35 EEADVIVVLGGDG---FMLQSFHQSKEYDKPIYGM 66
++ GGDG + + Q + D P G+
Sbjct: 81 FGVATVIAGGGDGTINEVSTALIQCEGDDIPALGI 115
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,198,284
Number of extensions: 99068
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 21
Length of query: 264
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 173
Effective length of database: 3,487,026
Effective search space: 603255498
Effective search space used: 603255498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)