RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780754|ref|YP_003065167.1| inorganic
polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 107 bits (267), Expect = 1e-24
Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 23/249 (9%)
Query: 8 IHFKASNAKKAQEAYDKF---VKIYGNSTS--EEADVIVVLGGDGFMLQSFHQSKEYDKP 62
++ + K+ +EA + V+++ + E D IV +GGDG +L+ + K P
Sbjct: 6 VYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-RCPP 64
Query: 63 IYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSI 122
I+G+N G VG L + E V ++ ++ F + ++LA+NE+++
Sbjct: 65 IFGINTGRVGLLTHAS-----PENFEVELKKAVEKFEVERFPRVSCSAMPDVLALNEIAV 119
Query: 123 IRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHL 182
+ + + D V + + CDG +V+T IGST Y FSA GP++
Sbjct: 120 LSRKPAKMIDV-----ALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECF 174
Query: 183 LLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATAD-RLAIEPVSRINVTQSSDI 241
+L P++PF W ++ + IE+ I AD + +++ I + +S
Sbjct: 175 ILIPIAPF-RFGWKPYVVSMERKIEVIA-----EKAIVVADGQKSVDFDGEITIEKSEFP 228
Query: 242 TMRILSDSH 250
+ ++
Sbjct: 229 AVFFKNEKR 237
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 96.2 bits (238), Expect = 2e-21
Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 13/241 (5%)
Query: 22 YDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGMNCGSVGFLMNEY--C 79
+ V ++ ++++VLGGDG L++ ++ P+ G+N G +GFL
Sbjct: 57 VEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEA 116
Query: 80 IENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPGQNQLVQAAKLEV 139
I+ ++E + L + V A+NEVS+ + P L V
Sbjct: 117 IDAVLEHVVAQDYRVEDRLTLDVVVRQGGRIVNRGWALNEVSLEKGPRLGVL-----GVV 171
Query: 140 KVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSPFKPRRWHGAI 199
D + CDG++VSTP GSTAY FSA GP+L + +L+ P + +
Sbjct: 172 VEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRP-MV 230
Query: 200 LPNDVMIEIQVLEHKQRPVIATAD---RLAIEPVSRINVTQSSDITMRILSDSHRSWSDR 256
+ I I++ E + D + I SR+ VT+ +++ ++DR
Sbjct: 231 TSPEATIAIEI-EADGHDALVFCDGRREMLIPAGSRLEVTR-CVTSVKWARLDSAPFTDR 288
Query: 257 I 257
+
Sbjct: 289 L 289
>d1hx6a2 b.121.2.1 (A:245-384) Coat protein p3 {Bacteriophage prd1
[TaxId: 10658]}
Length = 140
Score = 27.4 bits (60), Expect = 1.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 60 DKPIYGMNCGSVGFLMN 76
DKPIY + G+VGF++N
Sbjct: 103 DKPIYTLQYGNVGFVVN 119
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 27.3 bits (60), Expect = 1.3
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 13 SNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFM-----LQSFHQSKEYDKPIYGMN 67
S+ + E + + K + + I+++GGD L + + + + G+
Sbjct: 140 SSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVP 199
Query: 68 CGSVGFLMNEYCIENL 83
L N++ +
Sbjct: 200 KTIDADLRNDHIEISF 215
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 26.5 bits (57), Expect = 2.5
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 27 KIYGNSTSEEADVIVVLGGDGFMLQSF-HQSKEYDKPIYGM-NCGSVGFLMNEYCIENLV 84
+ E DV++ GGDG + + +++ ++P G+ G+V I N +
Sbjct: 49 LEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDI 108
Query: 85 E 85
Sbjct: 109 M 109
>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate
amidinotransferase {Streptomyces griseus [TaxId: 1911]}
Length = 348
Score = 26.1 bits (56), Expect = 3.1
Identities = 8/82 (9%), Positives = 15/82 (18%), Gaps = 5/82 (6%)
Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60
I + K+ +E + V V G
Sbjct: 44 SQEQIPSGAYPDRVLKETEEELHVLAAEL-----TKLGVTVRRPGPRDHSALIKTPDWET 98
Query: 61 KPIYGMNCGSVGFLMNEYCIEN 82
+ + + IE
Sbjct: 99 DGFHDYCPRDGLLSVGQTIIET 120
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 25.0 bits (53), Expect = 6.3
Identities = 6/53 (11%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 7 KIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEY 59
++A + + A+ + + ++ V+++L F + +S +
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHF 55
>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermotoga maritima [TaxId: 2336]}
Length = 205
Score = 24.9 bits (53), Expect = 6.9
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 26 VKIYGNSTSEEADVIVVLGGD--GFML-------QSFHQSKEYDKPIYGMNCGSVGFLMN 76
VKI G + E+A V G D GF+ S ++ + F+
Sbjct: 4 VKICGITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNE 63
Query: 77 EYCIEN 82
E
Sbjct: 64 EPEKIL 69
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 24.9 bits (53), Expect = 8.1
Identities = 10/75 (13%), Positives = 20/75 (26%)
Query: 7 KIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYDKPIYGM 66
KI F NAKK +E + + + + G+ + + + +
Sbjct: 9 KIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPV 68
Query: 67 NCGSVGFLMNEYCIE 81
N
Sbjct: 69 LVEDTCLCFNALGGL 83
>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Transmissible
gastroenteritis virus [TaxId: 11149]}
Length = 299
Score = 24.8 bits (54), Expect = 8.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 68 CGSVGFLMNEYCIE 81
CGSVG+++ +
Sbjct: 144 CGSVGYVLENGILY 157
>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Human coronavirus 229E
[TaxId: 11137]}
Length = 300
Score = 24.4 bits (53), Expect = 9.9
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 68 CGSVGFLMNEYCIE 81
CGS G+ + +E
Sbjct: 144 CGSPGYNLKNGEVE 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,967
Number of extensions: 43865
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 16
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)