BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] (264 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 550 bits (1417), Expect = e-158, Method: Compositional matrix adjust. Identities = 264/264 (100%), Positives = 264/264 (100%) Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD Sbjct: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60 Query: 61 KPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEV 120 KPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEV Sbjct: 61 KPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEV 120 Query: 121 SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR 180 SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR Sbjct: 121 SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR 180 Query: 181 HLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSD 240 HLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSD Sbjct: 181 HLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSD 240 Query: 241 ITMRILSDSHRSWSDRILTAQFSS 264 ITMRILSDSHRSWSDRILTAQFSS Sbjct: 241 ITMRILSDSHRSWSDRILTAQFSS 264 >gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 947 Score = 28.5 bits (62), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 25/51 (49%) Query: 183 LLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRI 233 LL P+ PF + + P D M + +L H Q P + D +IE V+ I Sbjct: 749 LLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWI 799 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 27.3 bits (59), Expect = 0.25, Method: Compositional matrix adjust. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 5 IQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGG 45 + K F A+ ++ + D FVKI N S+ + + ++GG Sbjct: 376 VGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGG 416 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 26.2 bits (56), Expect = 0.54, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 35/120 (29%) Query: 124 RKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLL 183 ++ QN V L VKV D+VR +++ DG ST +G A + L +P Sbjct: 768 QRSNQNTCVNQRPL-VKVGDEVRRNDIIADG--PSTDLGDLALGRNMLVAFMP------- 817 Query: 184 LTPVSPFKPRRWHG-----------AILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSR 232 WHG ++ DV I + E + V+A +L E ++R Sbjct: 818 -----------WHGYNFEDSMLISERMVSEDVFTSIHIEEFE---VMARDTKLGPEEITR 863 >gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 24.6 bits (52), Expect = 1.6, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 144 QVRLPELVCDGLVVSTPIGSTAYNFSALGP 173 Q L E +C + + PIG+ FSA P Sbjct: 366 QEMLRETICSNVRMGRPIGAVGLPFSARSP 395 >gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 369 Score = 24.3 bits (51), Expect = 2.2, Method: Compositional matrix adjust. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 91 VECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127 + C F ++ + + + IC L ++E+++I +P Sbjct: 246 LACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPA 282 >gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 378 Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Query: 146 RLPEL-----VCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189 RL EL GL V P + S + PILP+E H L+ +P Sbjct: 204 RLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTP 252 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 22.7 bits (47), Expect = 6.1, Method: Compositional matrix adjust. Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 13/52 (25%) Query: 129 NQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR 180 N++V K+ + +D+Q+ L E +C+ ++ GP+ PL +R Sbjct: 95 NEIVSVKKITMSLDEQLDLFEDLCNDIL-------------GYGPLQPLIAR 133 >gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 22.7 bits (47), Expect = 7.5, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 10/18 (55%) Query: 63 IYGMNCGSVGFLMNEYCI 80 I GM CG+ G + E C Sbjct: 24 IEGMGCGATGSIQAEICF 41 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 22.3 bits (46), Expect = 8.5, Method: Compositional matrix adjust. Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 104 DYDNSICAENILAINEVSI 122 DYD IC + +L + +I Sbjct: 144 DYDRKICMKGVLGLESATI 162 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.135 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,405 Number of Sequences: 1233 Number of extensions: 6069 Number of successful extensions: 20 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 11 length of query: 264 length of database: 328,796 effective HSP length: 72 effective length of query: 192 effective length of database: 240,020 effective search space: 46083840 effective search space used: 46083840 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)