BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780754|ref|YP_003065167.1| inorganic
polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 550 bits (1417), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60
MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD
Sbjct: 1 MDRNIQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGGDGFMLQSFHQSKEYD 60
Query: 61 KPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEV 120
KPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEV
Sbjct: 61 KPIYGMNCGSVGFLMNEYCIENLVERLSVAVECTFHPLKMTVFDYDNSICAENILAINEV 120
Query: 121 SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR 180
SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR
Sbjct: 121 SIIRKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR 180
Query: 181 HLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSD 240
HLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSD
Sbjct: 181 HLLLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRINVTQSSD 240
Query: 241 ITMRILSDSHRSWSDRILTAQFSS 264
ITMRILSDSHRSWSDRILTAQFSS
Sbjct: 241 ITMRILSDSHRSWSDRILTAQFSS 264
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 28.5 bits (62), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 183 LLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRI 233
LL P+ PF + + P D M + +L H Q P + D +IE V+ I
Sbjct: 749 LLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWI 799
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 27.3 bits (59), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 5 IQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGG 45
+ K F A+ ++ + D FVKI N S+ + + ++GG
Sbjct: 376 VGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGG 416
>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1386
Score = 26.2 bits (56), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 35/120 (29%)
Query: 124 RKPGQNQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESRHLL 183
++ QN V L VKV D+VR +++ DG ST +G A + L +P
Sbjct: 768 QRSNQNTCVNQRPL-VKVGDEVRRNDIIADG--PSTDLGDLALGRNMLVAFMP------- 817
Query: 184 LTPVSPFKPRRWHG-----------AILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSR 232
WHG ++ DV I + E + V+A +L E ++R
Sbjct: 818 -----------WHGYNFEDSMLISERMVSEDVFTSIHIEEFE---VMARDTKLGPEEITR 863
>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 440
Score = 24.6 bits (52), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 144 QVRLPELVCDGLVVSTPIGSTAYNFSALGP 173
Q L E +C + + PIG+ FSA P
Sbjct: 366 QEMLRETICSNVRMGRPIGAVGLPFSARSP 395
>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 369
Score = 24.3 bits (51), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 91 VECTFHPLKMTVFDYDNSICAENILAINEVSIIRKPG 127
+ C F ++ + + + IC L ++E+++I +P
Sbjct: 246 LACFFKDIERYIVEANLLICRSGALTVSEIAVIGRPA 282
>gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 378
Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 146 RLPEL-----VCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189
RL EL GL V P + S + PILP+E H L+ +P
Sbjct: 204 RLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTP 252
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 22.7 bits (47), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 13/52 (25%)
Query: 129 NQLVQAAKLEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSALGPILPLESR 180
N++V K+ + +D+Q+ L E +C+ ++ GP+ PL +R
Sbjct: 95 NEIVSVKKITMSLDEQLDLFEDLCNDIL-------------GYGPLQPLIAR 133
>gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 396
Score = 22.7 bits (47), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 63 IYGMNCGSVGFLMNEYCI 80
I GM CG+ G + E C
Sbjct: 24 IEGMGCGATGSIQAEICF 41
>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 957
Score = 22.3 bits (46), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 104 DYDNSICAENILAINEVSI 122
DYD IC + +L + +I
Sbjct: 144 DYDRKICMKGVLGLESATI 162
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,405
Number of Sequences: 1233
Number of extensions: 6069
Number of successful extensions: 20
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 11
length of query: 264
length of database: 328,796
effective HSP length: 72
effective length of query: 192
effective length of database: 240,020
effective search space: 46083840
effective search space used: 46083840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)