HHsearch alignment for GI: 254780755 and conserved domain: cd00385

>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=100.00  E-value=1.6e-36  Score=244.15  Aligned_cols=225  Identities=34%  Similarity=0.454  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHH---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             666557899999998752110112200110121010---01102343124578888764210243110001234567777
Q gi|254780755|r   65 VLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLV---WGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLA  141 (322)
Q Consensus        65 ~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~---~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~  141 (322)
T Consensus        13 ~~~~~~~~~~~~~~~i~DDi~D~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (243)
T cd00385          13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL   92 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999999715669999886385999987048399999999999999999986478999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             77545655421322103578989986433555544321000112222101579999973111689887641123670003
Q gi|254780755|r  142 EGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEM  221 (322)
Q Consensus       142 ~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~  221 (322)
T Consensus        93 ~g~~~d~~~~~~~~~s~~~y~~~~~~kta~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~ql~nDl~d~~~d~~~~  172 (243)
T cd00385          93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG  172 (243)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999998657999999999997422899999999999999809999999999999999999999999562468480248


Q ss_pred             CCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             84012345421365321001101431100013432036899989999999999974969999999999999999984208
Q gi|254780755|r  222 GKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCL  301 (322)
Q Consensus       222 GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~l  301 (322)
T Consensus       173 ---------~g~~t~p~~~~~~~~~~~~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~~~~l~~~  223 (243)
T cd00385         173 ---------EGKCTLPVLYALEYGVPAEDLL--------------------LVEKSGSLEEALEELAKLAEEALKELNEL  223 (243)
T ss_pred             ---------CCCCCHHHHHHHHHCCHHHHHH--------------------HHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------9986699999988488376655--------------------40135869999999999999999999999


Q ss_pred             CCC--HHHHHHHHHHHHHH
Q ss_conf             999--89999999999996
Q gi|254780755|r  302 PDS--SWKKSLMEVVDFCL  318 (322)
Q Consensus       302 p~~--~~k~~L~~L~~~ii  318 (322)
T Consensus       224 ~~~~~~~~~~~~~~~~~~~  242 (243)
T cd00385         224 ILSLPDVPRALLALALNLY  242 (243)
T ss_pred             HCCCCCCCHHHHHHHHCCC
T ss_conf             7788889999999986025