HHsearch alignment for GI: 254780755 and conserved domain: cd00867
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. The head-to-head (HH) IPPS catalyze t
Probab=100.00 E-value=0 Score=374.21 Aligned_cols=235 Identities=37% Similarity=0.553 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHH-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79999999999708985786666557899999998752110112200110121010-01102343124578888764210
Q gi|254780755|r 45 LRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLV-WGNQTSVLVGDFLLSQAFCMVIE 123 (322)
Q Consensus 45 ~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~-~G~~~Ail~GD~l~~~a~~~l~~ 123 (322)
T Consensus 1 ~Rp~l~~~~~~~~g~~~~~~~~~a~avElih~~slihDDi~D~~~~RRg~~t~~~~~~g~~~ail~gd~l~~~a~~~l~~ 80 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALAILAGDYLLARAFQLLAR 80 (236)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96599999999839888899999999999999999977533699777898656888605578999720999999999862
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 24311000123456777777545655421322103578989986433555544321000112222101579999973111
Q gi|254780755|r 124 TKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGI 203 (322)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~ 203 (322)
T Consensus 81 ~~~~~~~~~~~~~~~~l~~Gq~~Dl~~~~~~~~t~~~~~~~~~~KTa~l~~~~~~~~a~~~~~~~~~~~~l~~~g~~lG~ 160 (236)
T cd00867 81 LGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRALGL 160 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 38789999999999999998899976047888999999999998869999999999999819899999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf 68988764112367000384012345421365321001101431100013432036899989999999999974969999
Q gi|254780755|r 204 AFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDT 283 (322)
Q Consensus 204 afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~ 283 (322)
T Consensus 161 AfQi~DDllD~~~d~~~~gk-~~~D~~~gk~tlp~~~~--------------------------------------~~~~ 201 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA--------------------------------------RERA 201 (236)
T ss_pred HHHHHHHHHHCCCCHHHHCC-CHHHHHCCCCHHHHHHH--------------------------------------HHHH
T ss_conf 99999999884089677695-62568769720999999--------------------------------------9999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999842089998999999999999603
Q gi|254780755|r 284 EYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR 320 (322)
Q Consensus 284 ~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R 320 (322)
T Consensus 202 ~~~a~~~~~~~~~~~~~~~--~~~~~l~~l~~~i~~r 236 (236)
T cd00867 202 AEYAEEAYAALEALPPSLP--RARRALIALADFLYRR 236 (236)
T ss_pred HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCC
T ss_conf 9999999999998666267--8689999999998629