HHsearch alignment for GI: 254780755 and conserved domain: cd00867

>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. The head-to-head (HH) IPPS catalyze t
Probab=100.00  E-value=0  Score=374.21  Aligned_cols=235  Identities=37%  Similarity=0.553  Sum_probs=217.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHH-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             79999999999708985786666557899999998752110112200110121010-01102343124578888764210
Q gi|254780755|r   45 LRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLV-WGNQTSVLVGDFLLSQAFCMVIE  123 (322)
Q Consensus        45 ~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~-~G~~~Ail~GD~l~~~a~~~l~~  123 (322)
T Consensus         1 ~Rp~l~~~~~~~~g~~~~~~~~~a~avElih~~slihDDi~D~~~~RRg~~t~~~~~~g~~~ail~gd~l~~~a~~~l~~   80 (236)
T cd00867           1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALAILAGDYLLARAFQLLAR   80 (236)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96599999999839888899999999999999999977533699777898656888605578999720999999999862


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             24311000123456777777545655421322103578989986433555544321000112222101579999973111
Q gi|254780755|r  124 TKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGI  203 (322)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~  203 (322)
T Consensus        81 ~~~~~~~~~~~~~~~~l~~Gq~~Dl~~~~~~~~t~~~~~~~~~~KTa~l~~~~~~~~a~~~~~~~~~~~~l~~~g~~lG~  160 (236)
T cd00867          81 LGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRALGL  160 (236)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             38789999999999999998899976047888999999999998869999999999999819899999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf             68988764112367000384012345421365321001101431100013432036899989999999999974969999
Q gi|254780755|r  204 AFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDT  283 (322)
Q Consensus       204 afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~  283 (322)
T Consensus       161 AfQi~DDllD~~~d~~~~gk-~~~D~~~gk~tlp~~~~--------------------------------------~~~~  201 (236)
T cd00867         161 AFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA--------------------------------------RERA  201 (236)
T ss_pred             HHHHHHHHHHCCCCHHHHCC-CHHHHHCCCCHHHHHHH--------------------------------------HHHH
T ss_conf             99999999884089677695-62568769720999999--------------------------------------9999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999842089998999999999999603
Q gi|254780755|r  284 EYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR  320 (322)
Q Consensus       284 ~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R  320 (322)
T Consensus       202 ~~~a~~~~~~~~~~~~~~~--~~~~~l~~l~~~i~~r  236 (236)
T cd00867         202 AEYAEEAYAALEALPPSLP--RARRALIALADFLYRR  236 (236)
T ss_pred             HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCC
T ss_conf             9999999999998666267--8689999999998629