HHsearch alignment for GI: 254780755 and conserved domain: pfam00348

>pfam00348 polyprenyl_synt Polyprenyl synthetase.
Probab=100.00  E-value=0  Score=461.37  Aligned_cols=247  Identities=34%  Similarity=0.603  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHH
Q ss_conf             99999999967982279999999999708985786666557899999998752110112200110121010011023431
Q gi|254780755|r   30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLV  109 (322)
Q Consensus        30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~  109 (322)
T Consensus         1 l~~am~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEllH~aSLIHDDI~D~s~~RRG~pt~h~~~G~~~Ail~   80 (260)
T pfam00348         1 LLAAMLYYLLAGGKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDLMDNSDLRRGKPTCHKKFGEAGAILA   80 (260)
T ss_pred             CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHH
T ss_conf             97889988718934089999999999829988899999999999999999953324699877999860223111789997


Q ss_pred             HHHHHHHHHHHHHCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             245788887642102431----10001---23456777777545655421322103578989986433555544321000
Q gi|254780755|r  110 GDFLLSQAFCMVIETKSQ----EALEA---LSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSL  182 (322)
Q Consensus       110 GD~l~~~a~~~l~~~~~~----~~~~~---~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~  182 (322)
T Consensus        81 GD~L~~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~g~~gQ~~d~~~~-~~~~s~~~y~~~~~~KTa~Lf~~~~~~gai  159 (260)
T pfam00348        81 GDALLSRAFQLLALLGHVRPEPKYILISELANAVGAQGEVGQLMDLETE-GKDITLEEYLRIVSYKTAALFYASVQLGAI  159 (260)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5899999999998657998399999999999999999999999987567-889999999999999759999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCC
Q ss_conf             11222210157999997311168988764112367000384012345421365321001101431100013432036899
Q gi|254780755|r  183 IAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKI  262 (322)
Q Consensus       183 lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~  262 (322)
T Consensus       160 lag~~~~~~~~l~~~g~~lGiaFQi~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~i~ale~a~~~~r~~l~~~~~~~--  237 (260)
T pfam00348       160 VAGADEEDEKDLYDFGRDLGLAFQIQDDILDLTGDTEELGKPVGTDLQEGKSTLPVLLALEGAREEQRKLLREAYEQK--  237 (260)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC--
T ss_conf             819999999999999987368999899764144898770999554675690369999999869899999999998387--


Q ss_pred             CHHHHHHHHHHHHHCCH
Q ss_conf             98999999999997496
Q gi|254780755|r  263 SVENLKKAFIIMRENRA  279 (322)
Q Consensus       263 ~~~~~~~i~~ll~~~ga  279 (322)
T Consensus       238 ~~~~~~~~~~~~~~~~~  254 (260)
T pfam00348       238 LSEAAAQGVALTKALEA  254 (260)
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             78999999999999888