HHsearch results for GI: 254780755 and protein with PDBid: 1ezf_A
>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2
Probab=97.61 E-value=0.00094 Score=41.47 Aligned_cols=140 Identities=12% Similarity=0.036 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 45677777754565542132210357898998643355554432100011222210157999997311168988764112
Q gi|254780755|r 135 LVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDY 214 (322)
Q Consensus 135 ~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~ 214 (322)
.....+..|+. |.... .-.|++++.+-.++-.|....+.+.+-.. .+.+....+....++.++|+|+|+.|=+.|+
T Consensus 115 ~~~~~m~~~m~-d~~~~--~~~t~~dL~~Ycy~VAg~VG~~l~~l~~~-~~~~~~~~~~~~~~a~~lG~alQltNilRD~ 190 (340)
T 1ezf_A 115 DICRRMGIGMA-EFLDK--HVTSEQEWDKYCHYVAGLVGIGLSRLFSA-SEFEDPLVGEDTERANSMGLFLQKTNIIRDY 190 (340)
T ss_dssp HHHHHHHHHHH-HHHTS--CCCSHHHHHHHHHHHTHHHHHHHHHHHHH-HTSSCHHHHHCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHCCHH-HHCCC--CCCCHHHHHHHHHHCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79989725389-87367--67988999999987551699999999567-7765300688999999999999999899833
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 36700038401234542136532100110143110001343203689998999999999997496999999999999999
Q gi|254780755|r 215 RGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKA 294 (322)
Q Consensus 215 ~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A 294 (322)
..|+..|+.-||.-..-+.+-.. .++.. +.. .+.+. . ++......+..|.+.|
T Consensus 191 -----------~eD~~~gR~ylP~e~l~~~g~~~-----~dl~~-~~~-~~~~~---~------~~~~l~~~A~~~~~~a 243 (340)
T 1ezf_A 191 -----------LEDQQGGREFWPQEVWSRYVKKL-----GDFAK-PEN-IDLAV---Q------CLNELITNALHHIPDV 243 (340)
T ss_dssp -----------HHHHHHTCCCSCHHHHTTTCSSG-----GGGGS-GGG-HHHHH---H------HHHHHHHHHHTTHHHH
T ss_pred -----------HHHHHCCCEECCHHHHHHCCCCH-----HHHHC-CCC-CHHHH---H------HHHHHHHHHHHHHHHH
T ss_conf -----------99995896568889998839999-----98738-646-77899---9------9999999999999999
Q ss_pred HHHHHCCCCCH
Q ss_conf 99842089998
Q gi|254780755|r 295 KDSLRCLPDSS 305 (322)
Q Consensus 295 ~~~L~~lp~~~ 305 (322)
.+.+..+|+..
T Consensus 244 ~~~~~~lp~~~ 254 (340)
T 1ezf_A 244 ITYLSRLRNQS 254 (340)
T ss_dssp HHHHHTCCCHH
T ss_pred HHHHHHCCCHH
T ss_conf 99998789214