HHsearch results for GI: 254780755 and protein with PDBid: 1v4e_A

>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00  E-value=0  Score=456.59  Aligned_cols=286  Identities=26%  Similarity=0.411  Sum_probs=250.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999998607787589999999996798227999999999970898-5786666557899999998752110
Q gi|254780755|r    7 LTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLLHDDVV   85 (322)
Q Consensus         7 ~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLiHDDI~   85 (322)
                      ....|+++|++.+.+.+.   +.+.+.+.|.+..||||+||.+|+++++++|++ +++++.+|+|+|++|+|||||||||
T Consensus         8 ~~~~el~~v~~~i~~~l~---~~~~~~~~~~~~~~GKr~R~~l~l~~~~~~g~~~~~~~~~~AaaiEllH~asLihDDI~   84 (299)
T 1v4e_A            8 QNSYELEKVKERIEQILS---QFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVI   84 (299)
T ss_dssp             -CHHHHHHHHHHHHHHHH---HHSCHHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             349999999999999998---86569998676468862999999999998399963779999999999999999867843


Q ss_pred             CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             11220011012101001102343124578888764210243110001234567777775456554213221035789899
Q gi|254780755|r   86 DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVI  165 (322)
Q Consensus        86 D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii  165 (322)
                      |+|++|||+||+|++||++.||++||+|++.++.+++..+++.....++.++..+++||++|+.+..+ ..++++|++|+
T Consensus        85 D~s~~RRG~pt~~~~~g~~~ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~t~~~y~~ii  163 (299)
T 1v4e_A           85 DGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYK-PITKEEYLRIV  163 (299)
T ss_dssp             HTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf             59999888002466622258998244377776552000101788888887643003578788872279-99999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCC
Q ss_conf             86433555544321000112222101579999973111689887641123670003840123454213653210011014
Q gi|254780755|r  166 KSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRG  245 (322)
Q Consensus       166 ~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~  245 (322)
                      .+|||+||++||.+|++++|...   +.+++||+++|+||||+||++|++|++ .+|||+|+||++||+|||+++|++++
T Consensus       164 ~~KTa~lf~~~~~~gai~ag~~~---~~l~~~g~~lG~afQi~DD~lD~~g~~-~~GK~~g~Dl~~gk~T~pii~al~~~  239 (299)
T 1v4e_A          164 EGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKF  239 (299)
T ss_dssp             HHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTCC-SCCTTSSCCCTTTTCCHHHHHHHHHC
T ss_pred             HHHHHHHHHCCHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHHHHHHHHC
T ss_conf             86210126310467777547616---689999999999999769989735288-64995100876797309999999859


Q ss_pred             CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHH
Q ss_conf             311000134320368999899999999999749699999999999999999842---08999899999
Q gi|254780755|r  246 TKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLR---CLPDSSWKKSL  310 (322)
Q Consensus       246 ~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~---~lp~~~~k~~L  310 (322)
                      ++.++. +    .+     +++++++++++++|+++++++.++.+.++|.....   .+|++..|..|
T Consensus       240 ~~~~~~-~----~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~l~~~~d~i~k~~l  297 (299)
T 1v4e_A          240 PEARQM-F----EN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFVDGIFKIKI  297 (299)
T ss_dssp             HHHHHH-H----HT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC---------
T ss_pred             HHHHHH-H----HH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             599999-8----77-----7899999999984969999999999999988746688885289999985