HHsearch results for GI: 254780755 and protein with PDBid: 1v4e_A
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=0 Score=456.59 Aligned_cols=286 Identities=26% Similarity=0.411 Sum_probs=250.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998607787589999999996798227999999999970898-5786666557899999998752110
Q gi|254780755|r 7 LTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLLHDDVV 85 (322)
Q Consensus 7 ~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLiHDDI~ 85 (322)
....|+++|++.+.+.+. +.+.+.+.|.+..||||+||.+|+++++++|++ +++++.+|+|+|++|+|||||||||
T Consensus 8 ~~~~el~~v~~~i~~~l~---~~~~~~~~~~~~~~GKr~R~~l~l~~~~~~g~~~~~~~~~~AaaiEllH~asLihDDI~ 84 (299)
T 1v4e_A 8 QNSYELEKVKERIEQILS---QFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVI 84 (299)
T ss_dssp -CHHHHHHHHHHHHHHHH---HHSCHHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 349999999999999998---86569998676468862999999999998399963779999999999999999867843
Q ss_pred CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 11220011012101001102343124578888764210243110001234567777775456554213221035789899
Q gi|254780755|r 86 DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVI 165 (322)
Q Consensus 86 D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii 165 (322)
|+|++|||+||+|++||++.||++||+|++.++.+++..+++.....++.++..+++||++|+.+..+ ..++++|++|+
T Consensus 85 D~s~~RRG~pt~~~~~g~~~ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~t~~~y~~ii 163 (299)
T 1v4e_A 85 DGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYK-PITKEEYLRIV 163 (299)
T ss_dssp HTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf 59999888002466622258998244377776552000101788888887643003578788872279-99999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCC
Q ss_conf 86433555544321000112222101579999973111689887641123670003840123454213653210011014
Q gi|254780755|r 166 KSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRG 245 (322)
Q Consensus 166 ~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~ 245 (322)
.+|||+||++||.+|++++|... +.+++||+++|+||||+||++|++|++ .+|||+|+||++||+|||+++|++++
T Consensus 164 ~~KTa~lf~~~~~~gai~ag~~~---~~l~~~g~~lG~afQi~DD~lD~~g~~-~~GK~~g~Dl~~gk~T~pii~al~~~ 239 (299)
T 1v4e_A 164 EGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKF 239 (299)
T ss_dssp HHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTCC-SCCTTSSCCCTTTTCCHHHHHHHHHC
T ss_pred HHHHHHHHHCCHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHHHHHHHHC
T ss_conf 86210126310467777547616---689999999999999769989735288-64995100876797309999999859
Q ss_pred CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHH
Q ss_conf 311000134320368999899999999999749699999999999999999842---08999899999
Q gi|254780755|r 246 TKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLR---CLPDSSWKKSL 310 (322)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~---~lp~~~~k~~L 310 (322)
++.++. + .+ +++++++++++++|+++++++.++.+.++|..... .+|++..|..|
T Consensus 240 ~~~~~~-~----~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~l~~~~d~i~k~~l 297 (299)
T 1v4e_A 240 PEARQM-F----EN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFVDGIFKIKI 297 (299)
T ss_dssp HHHHHH-H----HT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC---------
T ss_pred HHHHHH-H----HH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599999-8----77-----7899999999984969999999999999988746688885289999985