HHsearch results for GI: 254780755 and protein with PDBid: 1wmw_A

>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8}
Probab=100.00  E-value=0  Score=497.54  Aligned_cols=307  Identities=24%  Similarity=0.291  Sum_probs=281.4

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             99999999860778758999999999679822799999999997089857866665578999999987521101122001
Q gi|254780755|r   13 EKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRR   92 (322)
Q Consensus        13 ~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RR   92 (322)
                      ..+++.+.+.+.+..|.+.++++|++.+||||+||.|++++++++|++.+.++++|+++||+|+||||||||||+|++||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGK~~R~~l~~~~~~~~~~~~~~~~~~A~a~EliH~asLihDDi~D~s~~RR   89 (330)
T 1wmw_A           10 QALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERR   89 (330)
T ss_dssp             HHHHHHHHHHTCCSSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEET
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999999862897168999999988569640999999999998199878999999999999999998757677999989


Q ss_pred             HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q ss_conf             10121010011023431245788887642102-----4311000123456777777545655421--3221035789899
Q gi|254780755|r   93 GKVAARLVWGNQTSVLVGDFLLSQAFCMVIET-----KSQEALEALSLVACTLAEGELRQLSLSK--NLDVTEEDYLHVI  165 (322)
Q Consensus        93 g~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~-----~~~~~~~~~~~~~~~l~~Gq~~d~~~~~--~~~~s~~~y~~ii  165 (322)
                      |+||+|.+||+++||++||||++++|.++++.     .++.++..++++..++++||.+|+.+..  +.+.++++|++++
T Consensus        90 G~pt~h~~~G~~~Ail~Gd~L~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i  169 (330)
T 1wmw_A           90 GRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMV  169 (330)
T ss_dssp             TEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHH
T ss_pred             CCCCHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             88049887176320105418888999999986523655399999998864223776342201012232232699999998


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
Q ss_conf             864335555-4432100011222210157999997311168988764112367000384012345421365321001101
Q gi|254780755|r  166 KSKTAVLFS-AALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQR  244 (322)
Q Consensus       166 ~~KTa~Lf~-~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~  244 (322)
                      ..||+++|. +|+.+|++++|.++.  +.+.+||+++|+||||+||++|++|++ .+|||+|+||++||+|||+++++++
T Consensus       170 ~~Kta~l~~~~~~~~ga~~ag~~~~--~~l~~~g~~lG~afQi~DDlld~~~~~-~~gK~~g~Dl~~gK~Tlpii~ale~  246 (330)
T 1wmw_A          170 AHKAAYYTAVAPLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVLNLEGGE-AYGKERAGDLYEGKRTLILLRFLEE  246 (330)
T ss_dssp             HHHTHHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHSCSC-CCSSSTTHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf             8727888998799988766011257--899999998778999757878753006-4089855076669840999999997


Q ss_pred             CCCCCCHHHHHHCCC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHH
Q ss_conf             431100013432036--89998999999999997496999999999999999998420----899989999999999996
Q gi|254780755|r  245 GTKREKNFWKSTIND--GKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRC----LPDSSWKKSLMEVVDFCL  318 (322)
Q Consensus       245 ~~~~~~~~l~~~~~~--~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~----lp~~~~k~~L~~L~~~ii  318 (322)
                      +++.++..+..++..  ...+.+++++++++++++|++++++.++++|.++|++.|+.    +|+++.++.|..|++|++
T Consensus       247 ~~~~~~~~l~~~~~~~~~~~~~~~i~~i~~~i~~~ga~~~~~~~~~~~~~~a~~~l~~~~~~~p~~~~~~~L~~l~~~~~  326 (330)
T 1wmw_A          247 APPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALV  326 (330)
T ss_dssp             SCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999972556689999999999999987929999999999999999999863023998499999999999998


Q ss_pred             CCCC
Q ss_conf             0379
Q gi|254780755|r  319 QRLN  322 (322)
Q Consensus       319 ~R~~  322 (322)
                      +|.+
T Consensus       327 ~R~~  330 (330)
T 1wmw_A          327 ERRA  330 (330)
T ss_dssp             HC--
T ss_pred             HCCC
T ss_conf             7879