HHsearch results for GI: 254780755 and protein with PDBid: 1wmw_A
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8}
Probab=100.00 E-value=0 Score=497.54 Aligned_cols=307 Identities=24% Similarity=0.291 Sum_probs=281.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999999860778758999999999679822799999999997089857866665578999999987521101122001
Q gi|254780755|r 13 EKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRR 92 (322)
Q Consensus 13 ~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RR 92 (322)
..+++.+.+.+.+..|.+.++++|++.+||||+||.|++++++++|++.+.++++|+++||+|+||||||||||+|++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGK~~R~~l~~~~~~~~~~~~~~~~~~A~a~EliH~asLihDDi~D~s~~RR 89 (330)
T 1wmw_A 10 QALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERR 89 (330)
T ss_dssp HHHHHHHHHHTCCSSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEET
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999862897168999999988569640999999999998199878999999999999999998757677999989
Q ss_pred HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q ss_conf 10121010011023431245788887642102-----4311000123456777777545655421--3221035789899
Q gi|254780755|r 93 GKVAARLVWGNQTSVLVGDFLLSQAFCMVIET-----KSQEALEALSLVACTLAEGELRQLSLSK--NLDVTEEDYLHVI 165 (322)
Q Consensus 93 g~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~-----~~~~~~~~~~~~~~~l~~Gq~~d~~~~~--~~~~s~~~y~~ii 165 (322)
|+||+|.+||+++||++||||++++|.++++. .++.++..++++..++++||.+|+.+.. +.+.++++|++++
T Consensus 90 G~pt~h~~~G~~~Ail~Gd~L~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i 169 (330)
T 1wmw_A 90 GRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMV 169 (330)
T ss_dssp TEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHH
T ss_pred CCCCHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 88049887176320105418888999999986523655399999998864223776342201012232232699999998
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
Q ss_conf 864335555-4432100011222210157999997311168988764112367000384012345421365321001101
Q gi|254780755|r 166 KSKTAVLFS-AALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQR 244 (322)
Q Consensus 166 ~~KTa~Lf~-~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~ 244 (322)
..||+++|. +|+.+|++++|.++. +.+.+||+++|+||||+||++|++|++ .+|||+|+||++||+|||+++++++
T Consensus 170 ~~Kta~l~~~~~~~~ga~~ag~~~~--~~l~~~g~~lG~afQi~DDlld~~~~~-~~gK~~g~Dl~~gK~Tlpii~ale~ 246 (330)
T 1wmw_A 170 AHKAAYYTAVAPLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVLNLEGGE-AYGKERAGDLYEGKRTLILLRFLEE 246 (330)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHSCSC-CCSSSTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf 8727888998799988766011257--899999998778999757878753006-4089855076669840999999997
Q ss_pred CCCCCCHHHHHHCCC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHH
Q ss_conf 431100013432036--89998999999999997496999999999999999998420----899989999999999996
Q gi|254780755|r 245 GTKREKNFWKSTIND--GKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRC----LPDSSWKKSLMEVVDFCL 318 (322)
Q Consensus 245 ~~~~~~~~l~~~~~~--~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~----lp~~~~k~~L~~L~~~ii 318 (322)
+++.++..+..++.. ...+.+++++++++++++|++++++.++++|.++|++.|+. +|+++.++.|..|++|++
T Consensus 247 ~~~~~~~~l~~~~~~~~~~~~~~~i~~i~~~i~~~ga~~~~~~~~~~~~~~a~~~l~~~~~~~p~~~~~~~L~~l~~~~~ 326 (330)
T 1wmw_A 247 APPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALV 326 (330)
T ss_dssp SCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999972556689999999999999987929999999999999999999863023998499999999999998
Q ss_pred CCCC
Q ss_conf 0379
Q gi|254780755|r 319 QRLN 322 (322)
Q Consensus 319 ~R~~ 322 (322)
+|.+
T Consensus 327 ~R~~ 330 (330)
T 1wmw_A 327 ERRA 330 (330)
T ss_dssp HC--
T ss_pred HCCC
T ss_conf 7879