HHsearch results for GI: 254780755 and protein with PDBid: 2her_A

>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00  E-value=0  Score=453.87  Aligned_cols=281  Identities=17%  Similarity=0.209  Sum_probs=239.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHH
Q ss_conf             999999999679822799999999997089----8578666655789999999875211011220011012101001102
Q gi|254780755|r   30 IPDVVKYLIFSGGKRLRPMLTLATALMLEY----RGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQT  105 (322)
Q Consensus        30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~----~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~  105 (322)
                      +.+++.|-+ .||||+||++|+++++++++    +.+.++.+|+|||++|+||||||||||+|++|||+||+|++||++.
T Consensus        60 ~~~~l~Y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~e~~~~la~~iEllH~asLIhDDI~D~s~~RRG~pt~h~~~G~~~  138 (368)
T 2her_A           60 YLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSN  138 (368)
T ss_dssp             HHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHH
T ss_pred             HHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHH
T ss_conf             999973678-9840052899999999838876688899999999999999999998532679998899704654454056


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHH-HHH
Q ss_conf             343124578888764210243-------11000123456777777545655421--32210357898998643355-554
Q gi|254780755|r  106 SVLVGDFLLSQAFCMVIETKS-------QEALEALSLVACTLAEGELRQLSLSK--NLDVTEEDYLHVIKSKTAVL-FSA  175 (322)
Q Consensus       106 Ail~GD~l~~~a~~~l~~~~~-------~~~~~~~~~~~~~l~~Gq~~d~~~~~--~~~~s~~~y~~ii~~KTa~L-f~~  175 (322)
                      |||+||+|++.++.++.+..+       .++++.+++++..+++||++|+.+..  +.+.++++|++|+++|||+| |.+
T Consensus       139 AI~~gd~L~~~a~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~t~e~Yl~ii~~KTa~l~f~~  218 (368)
T 2her_A          139 AINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYM  218 (368)
T ss_dssp             HHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             87579999999999998742356749999999998888778763089988745115688569999999999864168889


Q ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             4321000112--22210157999997311168988764112367000384012345421365321001101431100013
Q gi|254780755|r  176 ALEVSSLIAG--VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFW  253 (322)
Q Consensus       176 ~~~~ga~lag--~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l  253 (322)
                      |+.+|++++|  .+++..+.+.+||.++|+||||+||++|+++     |||.|+||++||+|||+++|++.++++++..+
T Consensus       219 ~~~~g~~lag~~~~~~~~~~l~~~g~~lGiaFQI~DD~lD~~~-----gk~~g~Di~egK~Tlpvi~ale~~~~~~k~~l  293 (368)
T 2her_A          219 PVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKI  293 (368)
T ss_dssp             HHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHH
T ss_conf             9999999715420237899999999999999991798752406-----99868377569708999999996999999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHCCCC
Q ss_conf             43203689998999999999997496999999999999999998420899989999----9999999960379
Q gi|254780755|r  254 KSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKS----LMEVVDFCLQRLN  322 (322)
Q Consensus       254 ~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~----L~~L~~~ii~R~~  322 (322)
                      .+++++   +.+.++++.+.+   +..+.+.+..+...+.+.+.++.+|+...++.    |..+++|+++|.+
T Consensus       294 ~~~~~k---~~~~vk~i~~~l---~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~l~~ll~kI~~~l~nr~~  360 (368)
T 2her_A          294 SENYGK---NSSLVKDCYNLL---KINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSRS  360 (368)
T ss_dssp             HHHTTT---CHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHCC---CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             998678---778999999998---0789999999999999999998664300799999999999999998611