HHsearch results for GI: 254780755 and protein with PDBid: 2her_A
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=0 Score=453.87 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=239.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHH
Q ss_conf 999999999679822799999999997089----8578666655789999999875211011220011012101001102
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEY----RGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQT 105 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~----~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~ 105 (322)
+.+++.|-+ .||||+||++|+++++++++ +.+.++.+|+|||++|+||||||||||+|++|||+||+|++||++.
T Consensus 60 ~~~~l~Y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~e~~~~la~~iEllH~asLIhDDI~D~s~~RRG~pt~h~~~G~~~ 138 (368)
T 2her_A 60 YLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSN 138 (368)
T ss_dssp HHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHH
T ss_pred HHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHH
T ss_conf 999973678-9840052899999999838876688899999999999999999998532679998899704654454056
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHH-HHH
Q ss_conf 343124578888764210243-------11000123456777777545655421--32210357898998643355-554
Q gi|254780755|r 106 SVLVGDFLLSQAFCMVIETKS-------QEALEALSLVACTLAEGELRQLSLSK--NLDVTEEDYLHVIKSKTAVL-FSA 175 (322)
Q Consensus 106 Ail~GD~l~~~a~~~l~~~~~-------~~~~~~~~~~~~~l~~Gq~~d~~~~~--~~~~s~~~y~~ii~~KTa~L-f~~ 175 (322)
|||+||+|++.++.++.+..+ .++++.+++++..+++||++|+.+.. +.+.++++|++|+++|||+| |.+
T Consensus 139 AI~~gd~L~~~a~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~t~e~Yl~ii~~KTa~l~f~~ 218 (368)
T 2her_A 139 AINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYM 218 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87579999999999998742356749999999998888778763089988745115688569999999999864168889
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 4321000112--22210157999997311168988764112367000384012345421365321001101431100013
Q gi|254780755|r 176 ALEVSSLIAG--VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFW 253 (322)
Q Consensus 176 ~~~~ga~lag--~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l 253 (322)
|+.+|++++| .+++..+.+.+||.++|+||||+||++|+++ |||.|+||++||+|||+++|++.++++++..+
T Consensus 219 ~~~~g~~lag~~~~~~~~~~l~~~g~~lGiaFQI~DD~lD~~~-----gk~~g~Di~egK~Tlpvi~ale~~~~~~k~~l 293 (368)
T 2her_A 219 PVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKI 293 (368)
T ss_dssp HHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHH
T ss_conf 9999999715420237899999999999999991798752406-----99868377569708999999996999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHCCCC
Q ss_conf 43203689998999999999997496999999999999999998420899989999----9999999960379
Q gi|254780755|r 254 KSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKS----LMEVVDFCLQRLN 322 (322)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~----L~~L~~~ii~R~~ 322 (322)
.+++++ +.+.++++.+.+ +..+.+.+..+...+.+.+.++.+|+...++. |..+++|+++|.+
T Consensus 294 ~~~~~k---~~~~vk~i~~~l---~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~l~~ll~kI~~~l~nr~~ 360 (368)
T 2her_A 294 SENYGK---NSSLVKDCYNLL---KINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSRS 360 (368)
T ss_dssp HHHTTT---CHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHCC---CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 998678---778999999998---0789999999999999999998664300799999999999999998611