HHsearch results for GI: 254780755 and protein with PDBid: 2j1p_A
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A*
Probab=100.00 E-value=0 Score=403.87 Aligned_cols=264 Identities=28% Similarity=0.434 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999860778758-9999999996798227999999999970898578666655789999999875211
Q gi|254780755|r 6 DLTLKDMEKVNFLILKRICSDVEM-IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV 84 (322)
Q Consensus 6 ~~~~~~l~~v~~~i~~~~~~~~~~-l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI 84 (322)
.++.++...|++.|.+.+....|. +.++++|.+.+||||+||.|++++++++|++++.++.+|+++|++|+||||||||
T Consensus 15 s~~~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~GGKrlRp~L~~~~~~~~g~~~~~~~~~a~aiEllH~asLIHDDI 94 (293)
T 2j1p_A 15 SYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDL 94 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999975576785679999998983787528899999999980998788999999999999999988277
Q ss_pred H--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHH--HHHHHHHHHHHHHHC
Q ss_conf 0--112200110121010011023431245788887642102431100--------0123456--777777545655421
Q gi|254780755|r 85 V--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEAL--------EALSLVA--CTLAEGELRQLSLSK 152 (322)
Q Consensus 85 ~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~--------~~~~~~~--~~l~~Gq~~d~~~~~ 152 (322)
+ |+|.+|||+||+|++||++.||++||++++.++.+++...+..+. ..+++.+ ..++.||..++....
T Consensus 95 ~d~D~s~~RRG~pt~h~~~g~~~Ail~GD~l~~~a~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (293)
T 2j1p_A 95 PCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEG 174 (293)
T ss_dssp TTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44678887787265888728404356432899999999876135545789999999999999999999999999887641
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf --322103578989986433555544321000112222101579999973111689887641123670003840123454
Q gi|254780755|r 153 --NLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFR 230 (322)
Q Consensus 153 --~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~ 230 (322)
..+.++++|..|+.+|||+||+++|.+||+++|++++.++.+++||.++|+||||+||++|++|+
T Consensus 175 ~~~~~~~~~~~~~i~~~KTa~l~~~~~~~gaila~~~~~~~~~l~~~G~~lGiAFQI~DDilD~~~d------------- 241 (293)
T 2j1p_A 175 LDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS------------- 241 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC-------------
T ss_conf 1345678999999999988999999999989772999999999999985700344334044441069-------------
Q ss_pred HCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 21365321001101431100013432036899989999999999974969999999999999999984208999899999
Q gi|254780755|r 231 NGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSL 310 (322)
Q Consensus 231 egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L 310 (322)
+|.|+|.+++++ .++..++++.++|++.|..++ ++.+..|
T Consensus 242 -~k~T~p~l~~l~--------------------------------------~a~~~~~~l~~~a~~~l~~~~-~~~~~~L 281 (293)
T 2j1p_A 242 -SKLTYPKLMGLE--------------------------------------KSREFAEKLNTEARDQLLGFD-SDKVAPL 281 (293)
T ss_dssp --CCCHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHTTTSC-TTTTHHH
T ss_pred -CCHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_conf -722689896499--------------------------------------999999999999999877389-1789999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999960379
Q gi|254780755|r 311 MEVVDFCLQRLN 322 (322)
Q Consensus 311 ~~L~~~ii~R~~ 322 (322)
.+|++|+++|.|
T Consensus 282 ~~l~~~i~~R~~ 293 (293)
T 2j1p_A 282 LALANYIANRQN 293 (293)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999987789