HHsearch results for GI: 254780755 and protein with PDBid: 2zco_A
>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
Probab=97.43 E-value=0.0062 Score=36.42 Aligned_cols=135 Identities=11% Similarity=0.051 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 45677777754565542132210357898998643355554432100011222210157999997311168988764112
Q gi|254780755|r 135 LVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDY 214 (322)
Q Consensus 135 ~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~ 214 (322)
+...+++.|...|+.... -.|+++...-.+.-.|+...+.+. ++++.+. +....++.++|+|+|+.|=+.|+
T Consensus 108 ~~~~~li~g~~~Dl~~~~--~~t~~dL~~Y~~~vAg~VG~l~~~---il~~~~~---~~~~~~A~~lG~AlQltNiLRDi 179 (293)
T 2zco_A 108 QSFYNLIDTVYKDQHFTM--FETDAELFGYCYGVAGTVGEVLTP---ILSDHET---HQTYDVARRLGESLQLINILRDV 179 (293)
T ss_dssp HHHHHHHHHHHHGGGCCC--CSSHHHHHHHHHHHTHHHHHHHHH---HHCSSCC---HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHCCCHHHHHHHH---HHCCCCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689999999998624356--899999999987130219999999---9615220---02799999999999999999715
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 36700038401234542136532100110143110001343203689998999999999997496999999999999999
Q gi|254780755|r 215 RGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKA 294 (322)
Q Consensus 215 ~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A 294 (322)
+.|+..|++-+|.-..-+..-. ... + .. +..++ .+..+ +.+....++.|..+|
T Consensus 180 -----------~eD~~~gR~YlP~e~l~~~gv~-~~~-l---~~-~~~~~-~~~~~---------~~~~~~~a~~~~~~a 232 (293)
T 2zco_A 180 -----------GEDFENERIYFSKQRLKQYEVD-IAE-V---YQ-NGVNN-HYIDL---------WEYYAAIAEKDFRDV 232 (293)
T ss_dssp -----------HHHHHTTCCCSCHHHHHHTTCC-HHH-H---HH-HCCCH-HHHHH---------HHHHHHHHHHHHHHH
T ss_pred -----------HHHHHCCCEECCHHHHHHCCCC-HHH-H---HC-CCCHH-HHHHH---------HHHHHHHHHHHHHHH
T ss_conf -----------9899779842889999885999-999-8---55-76205-89998---------999999999999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9984208999
Q gi|254780755|r 295 KDSLRCLPDS 304 (322)
Q Consensus 295 ~~~L~~lp~~ 304 (322)
...+..+|..
T Consensus 233 ~~~~~~lp~~ 242 (293)
T 2zco_A 233 MDQIKVFSIE 242 (293)
T ss_dssp HHTGGGSCTT
T ss_pred HHHHHHCCHH
T ss_conf 9868758998