HHsearch results for GI: 254780755 and protein with PDBid: 3dyh_A

>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00  E-value=0  Score=466.44  Aligned_cols=288  Identities=20%  Similarity=0.242  Sum_probs=252.7

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             99999999967982279999999999708985-----------------7866665578999999987521101122001
Q gi|254780755|r   30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-----------------DNHVLLACAIEFIHTATLLHDDVVDDSALRR   92 (322)
Q Consensus        30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-----------------~~~~~~a~~iEliH~asLiHDDI~D~~~~RR   92 (322)
                      +.+...|.+ .||||+||++|+++++++.+..                 ..+..+|+++|+||+||||||||||+|++||
T Consensus        58 ~~~~~~y~~-~GGKr~Rp~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~la~~iEllH~asLihDDImD~s~~RR  136 (390)
T 3dyh_A           58 LRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRR  136 (390)
T ss_dssp             HHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEET
T ss_pred             HHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             999996546-8854202399999999971668664310000001245689999999999999999998710357998879


Q ss_pred             HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHCC------------
Q ss_conf             101210100110234312457888876421024-------3110001234567777775456554213------------
Q gi|254780755|r   93 GKVAARLVWGNQTSVLVGDFLLSQAFCMVIETK-------SQEALEALSLVACTLAEGELRQLSLSKN------------  153 (322)
Q Consensus        93 g~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~-------~~~~~~~~~~~~~~l~~Gq~~d~~~~~~------------  153 (322)
                      |+||+|++||++.||++||++++.++..+....       ..++++.++++...++.||++|+.+..+            
T Consensus       137 G~pt~h~~~g~~~ai~~gD~ll~~a~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~  216 (390)
T 3dyh_A          137 GKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPT  216 (390)
T ss_dssp             TEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCC
T ss_pred             CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             99750313674888998229999999999985236671569999999999999998888864430102412347776302


Q ss_pred             ----CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             ----2210357898998643355-554432100011222-2101579999973111689887641123670003840123
Q gi|254780755|r  154 ----LDVTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQ-NSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE  227 (322)
Q Consensus       154 ----~~~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~-~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~  227 (322)
                          .++|+++|++|+++|||+| |.+|+.+|++++|.. ++..+.+.+||.++|+||||+||++|++|+++.+|| +|+
T Consensus       217 ~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~  295 (390)
T 3dyh_A          217 TTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGT  295 (390)
T ss_dssp             CSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CHH
T ss_conf             2343217999999999977669999999999897705117889988988899999999999998870089678697-456


Q ss_pred             HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC--CH
Q ss_conf             4542136532100110143110001343203689998999999999997496999999999999999998420899--98
Q gi|254780755|r  228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPD--SS  305 (322)
Q Consensus       228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~--~~  305 (322)
                      ||++||+|||+++|++.+++++++.+..++++.  +++.++++.+++.++++.+++.+.++.+.+.+.+.++.+|.  ..
T Consensus       296 Dl~egK~Tlp~i~al~~~~~~~r~~l~~~~~~~--d~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~  373 (390)
T 3dyh_A          296 DIQDAKCSWLAVTFLAKASSAQVAEFKANYGSG--DSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPG  373 (390)
T ss_dssp             TTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             787698339999999859999999999986799--879999999999985988999999999999999999847347857


Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             9999999999996037
Q gi|254780755|r  306 WKKSLMEVVDFCLQRL  321 (322)
Q Consensus       306 ~k~~L~~L~~~ii~R~  321 (322)
                      .++.|..+++++.+|.
T Consensus       374 ~~~~l~~ll~~i~kR~  389 (390)
T 3dyh_A          374 FAASVETLWGKTYKRQ  389 (390)
T ss_dssp             HHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999997689