HHsearch results for GI: 254780755 and protein with PDBid: 3kra_B

>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B*
Probab=100.00  E-value=0  Score=389.45  Aligned_cols=237  Identities=16%  Similarity=0.193  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999860778758-99999999967982279999999999708985786666557899999998752110
Q gi|254780755|r    7 LTLKDMEKVNFLILKRICSDVEM-IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVV   85 (322)
Q Consensus         7 ~~~~~l~~v~~~i~~~~~~~~~~-l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~   85 (322)
                      +...--++|++.|.+.+....|. +.++++|++.+||||+||.||+++++++|++.++++++|+++|++|+||||||||+
T Consensus         4 y~~~i~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~l~~~~~~gg~~~~~l~~AaaiEliH~asLIHDDI~   83 (274)
T 3kra_B            4 YWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP   83 (274)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999765768958899999999847886299999999999939799999899999999999999981776


Q ss_pred             -CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC----------CCHHHHHHH--HHHHHHHHHHHHHHC
Q ss_conf             -1122001101210100110234312457888876421024311----------000123456--777777545655421
Q gi|254780755|r   86 -DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQE----------ALEALSLVA--CTLAEGELRQLSLSK  152 (322)
Q Consensus        86 -D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~----------~~~~~~~~~--~~l~~Gq~~d~~~~~  152 (322)
                       |+++.|||+||+|.+||++.|||+||+|++.+|++++...++.          ++..+++++  .-++.||.+|+....
T Consensus        84 ddd~~~RRG~pt~h~~~G~~~AIl~GD~L~~~af~~la~~~~~~~~~~~~~~~~~i~~ls~~~~~~g~~~Gq~~d~~~~~  163 (274)
T 3kra_B           84 LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVD  163 (274)
T ss_dssp             CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf             56532248999855564839999999999988999998558841024589999999999987768888712589988406


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---------CC---CCC
Q ss_conf             322103578989986433555544321000112222101579999973111689887641123---------67---000
Q gi|254780755|r  153 NLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYR---------GE---VNE  220 (322)
Q Consensus       153 ~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~---------g~---~~~  220 (322)
                       ..++++.|..|+++|||+||++||.+||+++|++++.++.+++||+++|++|||.||..+|.         ++   .+.
T Consensus       164 -~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~afQi~DD~l~~~~~~~~~~~  242 (274)
T 3kra_B          164 -GNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEE  242 (274)
T ss_dssp             -TSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHH
T ss_conf             -7777899999998645399999999999981939999999999999958873224665350034016630466435998


Q ss_pred             CCCHHHHH--HHHCCCCCCCCHHHHC
Q ss_conf             38401234--5421365321001101
Q gi|254780755|r  221 MGKNIGED--FRNGKPTLPVILAFQR  244 (322)
Q Consensus       221 ~GK~~g~D--l~egk~Tlpii~al~~  244 (322)
                      +||+.|.|  +.+||.|+|++||-.+
T Consensus       243 lgk~~g~d~~l~~~~~t~p~l~a~~~  268 (274)
T 3kra_B          243 LGGFHGKNAELMSSLVAEPSLYAAHH  268 (274)
T ss_dssp             HTTSCSSHHHHTGGGGC---------
T ss_pred             HCCCCCCCHHHHCCCHHHHHHHHCCC
T ss_conf             18987861878658232899986065