HHsearch results for GI: 254780755 and protein with PDBid: 3m0g_A

>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00  E-value=0  Score=417.69  Aligned_cols=274  Identities=26%  Similarity=0.377  Sum_probs=228.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999860778-75899999999967982279999999999708985786666557899999998752
Q gi|254780755|r    4 LEDLTLKDMEKVNFLILKRICSD-VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHD   82 (322)
Q Consensus         4 l~~~~~~~l~~v~~~i~~~~~~~-~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHD   82 (322)
                      +.+.+.+--+.|+..+.+.+... .+.+.++..|.+ +||||+||.||+++++++|++.+.++++|+++|++|+||||||
T Consensus         3 l~~~l~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~asLIHD   81 (297)
T 3m0g_A            3 LSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYAA-QGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHD   81 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHH-SCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             799999999999999999864388088999998474-5751899999999998809698999999999999999999918


Q ss_pred             HHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHH----HHHHHHHHHHHHHHHHH-
Q ss_conf             110--112200110121010011023431245788887642102431----1000123----45677777754565542-
Q gi|254780755|r   83 DVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ----EALEALS----LVACTLAEGELRQLSLS-  151 (322)
Q Consensus        83 DI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~----~~~~~~~----~~~~~l~~Gq~~d~~~~-  151 (322)
                      |||  |+|++|||+||+|.+||++.|||+||++++.+++++++....    ++.....    .....++.||..+..+. 
T Consensus        82 DI~d~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~  161 (297)
T 3m0g_A           82 DMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAET  161 (297)
T ss_dssp             TSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             76468987444899646877085476775117877679998752012088899999999999999999977379888662


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             13221035789899864335555443210001122221015799999731116898876411236700038401234542
Q gi|254780755|r  152 KNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN  231 (322)
Q Consensus       152 ~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~e  231 (322)
                      .+.+.++++|++|+.+|||+||.++|.+|++++|.+.   +.+..||+++|+||||+||++|++|+++.+|||+|+|+++
T Consensus       162 ~~~~~~~~~~~~~~~~KTa~l~~~~~~~~~~~~~~~~---~~~~~~g~~lG~aFQi~DDlld~~gd~~~~GK~~g~Dl~e  238 (297)
T 3m0g_A          162 AAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADR---GPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEA  238 (297)
T ss_dssp             SSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHTTCC-------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHC
T ss_conf             2630789999998799999999999998998749978---9999877888889998889887317876409966559875


Q ss_pred             CCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             13653210011014311000134320368999899999999999749699999999999999999842089998999999
Q gi|254780755|r  232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLM  311 (322)
Q Consensus       232 gk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~  311 (322)
                      ||+|||++++++.                                      +++..+++.++|.+.++.+++  ..+.|.
T Consensus       239 gK~T~~~i~al~~--------------------------------------a~~~~~~l~~~a~~~l~~~~~--~~~~L~  278 (297)
T 3m0g_A          239 HKATFVSLLGLAG--------------------------------------AKSRAADLVAEAEAALAPYGE--AASTLR  278 (297)
T ss_dssp             --CCHHHHHCSSH--------------------------------------HHHHHHHHHHHHHHHTGGGGG--GGHHHH
T ss_pred             CCCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCH--HHHHHH
T ss_conf             9976999999999--------------------------------------999999999999997664773--689999


Q ss_pred             HHHHHHHCCC
Q ss_conf             9999996037
Q gi|254780755|r  312 EVVDFCLQRL  321 (322)
Q Consensus       312 ~L~~~ii~R~  321 (322)
                      ++++|+++|.
T Consensus       279 ~l~~~i~~R~  288 (297)
T 3m0g_A          279 ACARYVIERD  288 (297)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHHHC
T ss_conf             9999999970