HHsearch results for GI: 254780755 and protein with PDBid: 3m0g_A
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=0 Score=417.69 Aligned_cols=274 Identities=26% Similarity=0.377 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999860778-75899999999967982279999999999708985786666557899999998752
Q gi|254780755|r 4 LEDLTLKDMEKVNFLILKRICSD-VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHD 82 (322)
Q Consensus 4 l~~~~~~~l~~v~~~i~~~~~~~-~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHD 82 (322)
+.+.+.+--+.|+..+.+.+... .+.+.++..|.+ +||||+||.||+++++++|++.+.++++|+++|++|+||||||
T Consensus 3 l~~~l~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~asLIHD 81 (297)
T 3m0g_A 3 LSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYAA-QGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHD 81 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHH-SCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799999999999999999864388088999998474-5751899999999998809698999999999999999999918
Q ss_pred HHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHH----HHHHHHHHHHHHHHHHH-
Q ss_conf 110--112200110121010011023431245788887642102431----1000123----45677777754565542-
Q gi|254780755|r 83 DVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ----EALEALS----LVACTLAEGELRQLSLS- 151 (322)
Q Consensus 83 DI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~----~~~~~~~----~~~~~l~~Gq~~d~~~~- 151 (322)
||| |+|++|||+||+|.+||++.|||+||++++.+++++++.... ++..... .....++.||..+..+.
T Consensus 82 DI~d~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~ 161 (297)
T 3m0g_A 82 DMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAET 161 (297)
T ss_dssp TSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76468987444899646877085476775117877679998752012088899999999999999999977379888662
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 13221035789899864335555443210001122221015799999731116898876411236700038401234542
Q gi|254780755|r 152 KNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231 (322)
Q Consensus 152 ~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~e 231 (322)
.+.+.++++|++|+.+|||+||.++|.+|++++|.+. +.+..||+++|+||||+||++|++|+++.+|||+|+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~KTa~l~~~~~~~~~~~~~~~~---~~~~~~g~~lG~aFQi~DDlld~~gd~~~~GK~~g~Dl~e 238 (297)
T 3m0g_A 162 AAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADR---GPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEA 238 (297)
T ss_dssp SSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHTTCC-------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHC
T ss_conf 2630789999998799999999999998998749978---9999877888889998889887317876409966559875
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 13653210011014311000134320368999899999999999749699999999999999999842089998999999
Q gi|254780755|r 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLM 311 (322)
Q Consensus 232 gk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~ 311 (322)
||+|||++++++. +++..+++.++|.+.++.+++ ..+.|.
T Consensus 239 gK~T~~~i~al~~--------------------------------------a~~~~~~l~~~a~~~l~~~~~--~~~~L~ 278 (297)
T 3m0g_A 239 HKATFVSLLGLAG--------------------------------------AKSRAADLVAEAEAALAPYGE--AASTLR 278 (297)
T ss_dssp --CCHHHHHCSSH--------------------------------------HHHHHHHHHHHHHHHTGGGGG--GGHHHH
T ss_pred CCCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCH--HHHHHH
T ss_conf 9976999999999--------------------------------------999999999999997664773--689999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999996037
Q gi|254780755|r 312 EVVDFCLQRL 321 (322)
Q Consensus 312 ~L~~~ii~R~ 321 (322)
++++|+++|.
T Consensus 279 ~l~~~i~~R~ 288 (297)
T 3m0g_A 279 ACARYVIERD 288 (297)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHC
T ss_conf 9999999970