HHsearch results for GI: 254780755 and protein with PDBid: 3n3d_A
>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis}
Probab=100.00 E-value=0 Score=515.32 Aligned_cols=313 Identities=27% Similarity=0.421 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999986077875899999999967982279999999999708985-786666557899999998752110
Q gi|254780755|r 7 LTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-DNHVLLACAIEFIHTATLLHDDVV 85 (322)
Q Consensus 7 ~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-~~~~~~a~~iEliH~asLiHDDI~ 85 (322)
.+.++|.+|++.|.+.+.+.++.+.++++|++.+||||+||.+++++++++++.. +.+..+|+++||||+|||||||||
T Consensus 13 ~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI~ 92 (335)
T 3n3d_A 13 QVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVI 92 (335)
T ss_dssp TTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHTCTTCHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999870788668999999999589855899999999987699977889999999999999999846754
Q ss_pred CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 11220011012101001102343124578888764210-24311000123456777777545655421322103578989
Q gi|254780755|r 86 DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIE-TKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHV 164 (322)
Q Consensus 86 D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~-~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~i 164 (322)
|+|++|||+||+|.+||++.|||+||||++.+|..+.. .....+.+.++.+...+++||..++.+..+.+.++++|+++
T Consensus 93 D~s~~RRg~p~~~~~~g~~~Ail~gd~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y~~~ 172 (335)
T 3n3d_A 93 DDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNE 172 (335)
T ss_dssp TTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHH
T ss_pred CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 79987788533200000889999753999999984000000179999999988999877899987502778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
Q ss_conf 98643355554432100011222210157999997311168988764112367000384012345421365321001101
Q gi|254780755|r 165 IKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQR 244 (322)
Q Consensus 165 i~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~ 244 (322)
+..|||+||.++|.+|++++|++++..+.+++||+++|+||||+||++|++|+++.+|||+|+||++||+|||++++++.
T Consensus 173 i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlpil~ale~ 252 (335)
T 3n3d_A 173 IAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSH 252 (335)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSCCHHHHHHHHHTCCCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf 99868889999999877410242577799999877778898875676532488778698641356569527999999872
Q ss_pred CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 431100013432036899989999999999974969999999999999999984208999899999999999960379
Q gi|254780755|r 245 GTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRLN 322 (322)
Q Consensus 245 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~~ 322 (322)
++++.++.+.. ....+++++++++++++++|++++++++++.|.++|++.|+.+|+++.|+.|.+|++|+++|.+
T Consensus 253 ~~~~~~~~l~~---~~~~~~~~i~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~vi~R~~ 327 (335)
T 3n3d_A 253 APRDFHKLLKK---KQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLLRRDH 327 (335)
T ss_dssp CHHHHHHHHSS---GGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98999999974---6389999999999999987969999999999999999998679998899999999999986899