HHsearch results for GI: 254780755 and protein with PDBid: 3n3d_A

>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis}
Probab=100.00  E-value=0  Score=515.32  Aligned_cols=313  Identities=27%  Similarity=0.421  Sum_probs=292.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999986077875899999999967982279999999999708985-786666557899999998752110
Q gi|254780755|r    7 LTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-DNHVLLACAIEFIHTATLLHDDVV   85 (322)
Q Consensus         7 ~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-~~~~~~a~~iEliH~asLiHDDI~   85 (322)
                      .+.++|.+|++.|.+.+.+.++.+.++++|++.+||||+||.+++++++++++.. +.+..+|+++||||+|||||||||
T Consensus        13 ~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI~   92 (335)
T 3n3d_A           13 QVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVI   92 (335)
T ss_dssp             TTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHTCTTCHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999870788668999999999589855899999999987699977889999999999999999846754


Q ss_pred             CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             11220011012101001102343124578888764210-24311000123456777777545655421322103578989
Q gi|254780755|r   86 DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIE-TKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHV  164 (322)
Q Consensus        86 D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~-~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~i  164 (322)
                      |+|++|||+||+|.+||++.|||+||||++.+|..+.. .....+.+.++.+...+++||..++.+..+.+.++++|+++
T Consensus        93 D~s~~RRg~p~~~~~~g~~~Ail~gd~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y~~~  172 (335)
T 3n3d_A           93 DDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNE  172 (335)
T ss_dssp             TTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             79987788533200000889999753999999984000000179999999988999877899987502778899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
Q ss_conf             98643355554432100011222210157999997311168988764112367000384012345421365321001101
Q gi|254780755|r  165 IKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQR  244 (322)
Q Consensus       165 i~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~  244 (322)
                      +..|||+||.++|.+|++++|++++..+.+++||+++|+||||+||++|++|+++.+|||+|+||++||+|||++++++.
T Consensus       173 i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlpil~ale~  252 (335)
T 3n3d_A          173 IAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSH  252 (335)
T ss_dssp             HHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSCCHHHHHHHHHTCCCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf             99868889999999877410242577799999877778898875676532488778698641356569527999999872


Q ss_pred             CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             431100013432036899989999999999974969999999999999999984208999899999999999960379
Q gi|254780755|r  245 GTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRLN  322 (322)
Q Consensus       245 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~~  322 (322)
                      ++++.++.+..   ....+++++++++++++++|++++++++++.|.++|++.|+.+|+++.|+.|.+|++|+++|.+
T Consensus       253 ~~~~~~~~l~~---~~~~~~~~i~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~vi~R~~  327 (335)
T 3n3d_A          253 APRDFHKLLKK---KQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLLRRDH  327 (335)
T ss_dssp             CHHHHHHHHSS---GGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             98999999974---6389999999999999987969999999999999999998679998899999999999986899