HHsearch results for GI: 254780755 and protein with PDBid: 3npk_A

>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00  E-value=0  Score=419.80  Aligned_cols=234  Identities=23%  Similarity=0.378  Sum_probs=207.4

Q ss_pred             HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHCCCCH
Q ss_conf             607787589999999996798227999999999970898-578666655789999999875211--01122001101210
Q gi|254780755|r   22 RICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAAR   98 (322)
Q Consensus        22 ~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLiHDDI--~D~~~~RRg~~t~~   98 (322)
                      .+.+.+|.+.++++|++.+||||+||++|++++++++++ .+.++.+|+++||+|+||||||||  ||+|++|||+||+|
T Consensus        19 ~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLiHDDI~~mD~s~~RRG~pt~h   98 (291)
T 3npk_A           19 KVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLH   98 (291)
T ss_dssp             CCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             35566747999999998589853879999999998599736899999999999999999972870346874458987643


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             10011023431245788887642102431100012-------34567777775456554213221035789899864335
Q gi|254780755|r   99 LVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEAL-------SLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAV  171 (322)
Q Consensus        99 ~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~-------~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~  171 (322)
                      .+||++.||++||+|++.+|..+++..........       +.....++.||..|+.+..+ ..++++|..|+.+|||+
T Consensus        99 ~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~-~~~~~~y~~i~~~KTa~  177 (291)
T 3npk_A           99 KSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK-RLSLNELEFLHTHKTAR  177 (291)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHH
T ss_pred             CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf             43206799980729889898887764001468899999999988999999888999987505-78799999999998885


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCH
Q ss_conf             55544321000112222101579999973111689887641123670003840123454213653210011014311000
Q gi|254780755|r  172 LFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKN  251 (322)
Q Consensus       172 Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~  251 (322)
                      ||++||.+||+++|++++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||++|  |||++++++.+.+..++
T Consensus       178 lf~~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~gd~~~~GK~~g~Di~kg--t~~~i~al~~a~~~~~~  255 (291)
T 3npk_A          178 LIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKN--SFVNLLGLEQAIKTKEN  255 (291)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------C--CHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC--CHHHHHHHHHHHHHHHH
T ss_conf             8989999999984799999999998999888887737998863388888599857636544--19999999973999999


Q ss_pred             HHHHHCC
Q ss_conf             1343203
Q gi|254780755|r  252 FWKSTIN  258 (322)
Q Consensus       252 ~l~~~~~  258 (322)
                      .+.+...
T Consensus       256 ll~~~~~  262 (291)
T 3npk_A          256 LLNECEQ  262 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999998