HHsearch results for GI: 254780755 and protein with PDBid: 3npk_A
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=0 Score=419.80 Aligned_cols=234 Identities=23% Similarity=0.378 Sum_probs=207.4
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHCCCCH
Q ss_conf 607787589999999996798227999999999970898-578666655789999999875211--01122001101210
Q gi|254780755|r 22 RICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAAR 98 (322)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLiHDDI--~D~~~~RRg~~t~~ 98 (322)
.+.+.+|.+.++++|++.+||||+||++|++++++++++ .+.++.+|+++||+|+|||||||| ||+|++|||+||+|
T Consensus 19 ~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLiHDDI~~mD~s~~RRG~pt~h 98 (291)
T 3npk_A 19 KVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLH 98 (291)
T ss_dssp CCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 35566747999999998589853879999999998599736899999999999999999972870346874458987643
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 10011023431245788887642102431100012-------34567777775456554213221035789899864335
Q gi|254780755|r 99 LVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEAL-------SLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAV 171 (322)
Q Consensus 99 ~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~-------~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~ 171 (322)
.+||++.||++||+|++.+|..+++.......... +.....++.||..|+.+..+ ..++++|..|+.+|||+
T Consensus 99 ~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~-~~~~~~y~~i~~~KTa~ 177 (291)
T 3npk_A 99 KSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK-RLSLNELEFLHTHKTAR 177 (291)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf 43206799980729889898887764001468899999999988999999888999987505-78799999999998885
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCH
Q ss_conf 55544321000112222101579999973111689887641123670003840123454213653210011014311000
Q gi|254780755|r 172 LFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKN 251 (322)
Q Consensus 172 Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~ 251 (322)
||++||.+||+++|++++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||++| |||++++++.+.+..++
T Consensus 178 lf~~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~gd~~~~GK~~g~Di~kg--t~~~i~al~~a~~~~~~ 255 (291)
T 3npk_A 178 LIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKN--SFVNLLGLEQAIKTKEN 255 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------C--CHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC--CHHHHHHHHHHHHHHHH
T ss_conf 8989999999984799999999998999888887737998863388888599857636544--19999999973999999
Q ss_pred HHHHHCC
Q ss_conf 1343203
Q gi|254780755|r 252 FWKSTIN 258 (322)
Q Consensus 252 ~l~~~~~ 258 (322)
.+.+...
T Consensus 256 ll~~~~~ 262 (291)
T 3npk_A 256 LLNECEQ 262 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999998