HHsearch results for GI: 254780755 and protein with PDBid: 3p8r_A
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=432.46 Aligned_cols=274 Identities=27% Similarity=0.401 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998607---787589999999996798227999999999970898578666655789999999875211
Q gi|254780755|r 8 TLKDMEKVNFLILKRIC---SDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV 84 (322)
Q Consensus 8 ~~~~l~~v~~~i~~~~~---~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI 84 (322)
+.....++++.|.+.+. ...+++.++++|.+.+||||+||.|++++++++|++.+.++++|+++|++|+||||||||
T Consensus 13 l~~~~~~~~~~l~~~l~~~~~~~~~l~ea~~y~l~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~asLIHDDi 92 (302)
T 3p8r_A 13 LSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDL 92 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999986278998539999998852880049999999999980998466689999999999999984167
Q ss_pred HC--HHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHH------HHHHHHHHHHHHHC
Q ss_conf 01--1220011012101001102343124578888764210243110001----234567------77777545655421
Q gi|254780755|r 85 VD--DSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEA----LSLVAC------TLAEGELRQLSLSK 152 (322)
Q Consensus 85 ~D--~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~----~~~~~~------~l~~Gq~~d~~~~~ 152 (322)
+| ++++|||+||+|.+||++.|||+||+|++.+++++++.+....... +..... .++.||..+....
T Consensus 93 ~D~d~~~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 171 (302)
T 3p8r_A 93 PAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAE- 171 (302)
T ss_dssp HHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTT-
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 3456321015888610024839999997899988999987336542117889999999999999999999999986223-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 3221035789899864335555443210001122-221015799999731116898876411236700038401234542
Q gi|254780755|r 153 NLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGV-QNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231 (322)
Q Consensus 153 ~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~-~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~e 231 (322)
+..+++++|+.|+..|||+||+++|.+|++++|. +++..+.+.+||+++|+||||+||++|++|+++.+|||.|+|+++
T Consensus 172 ~~~~s~~~y~~~~~~KT~~l~~~~~~~~~~l~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~g~~~~~GK~~g~Dl~~ 251 (302)
T 3p8r_A 172 NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQEL 251 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHC
T ss_conf 67899999999999999899999999888750577567899999988998867889758766028867749973038775
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 13653210011014311000134320368999899999999999749699999999999999999842089998999999
Q gi|254780755|r 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLM 311 (322)
Q Consensus 232 gk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~ 311 (322)
||+|||++++++. +.+..+++.++|+..++.+|... +.|.
T Consensus 252 gK~Tlp~i~a~e~--------------------------------------a~~~~~~~l~~a~~~l~~~~~~~--~~L~ 291 (302)
T 3p8r_A 252 NKSTYPALLGLEG--------------------------------------AQQKAHTLLQEALLALEAIPYNT--EHLE 291 (302)
T ss_dssp -CCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHTTCSSCT--HHHH
T ss_pred CCCHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCCCH--HHHH
T ss_conf 9852999999997--------------------------------------69999999999999887589658--9999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999960379
Q gi|254780755|r 312 EVVDFCLQRLN 322 (322)
Q Consensus 312 ~L~~~ii~R~~ 322 (322)
++++|+++|.|
T Consensus 292 ~l~~~i~~R~~ 302 (302)
T 3p8r_A 292 EFARYVVERKN 302 (302)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987679