Query gi|254780755|ref|YP_003065168.1| octaprenyl-diphosphate synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 322
No_of_seqs 173 out of 4641
Neff 7.9
Searched_HMMs 23785
Date Tue May 31 15:55:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780755.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 0 0 571.8 25.1 321 2-322 25-345 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 0 0 566.1 28.4 320 2-321 12-332 (341)
3 3lmd_A Geranylgeranyl pyrophos 100.0 0 0 553.9 26.6 318 2-322 34-352 (360)
4 1wy0_A Geranylgeranyl pyrophos 100.0 0 0 539.1 25.0 320 2-321 5-341 (342)
5 3nf2_A Putative polyprenyl syn 100.0 0 0 523.1 24.6 318 3-321 4-343 (352)
6 3aqb_B Component B of hexapren 100.0 0 0 518.3 26.0 317 4-321 6-324 (325)
7 3n3d_A Geranylgeranyl pyrophos 100.0 0 0 515.3 26.8 313 7-322 13-327 (335)
8 3lk5_A Geranylgeranyl pyrophos 100.0 0 0 501.3 25.9 321 1-321 18-372 (380)
9 1wmw_A Geranylgeranyl diphosph 100.0 0 0 497.5 26.7 307 13-322 10-330 (330)
10 2q80_A Geranylgeranyl pyrophos 100.0 0 0 503.3 20.3 289 26-320 9-299 (301)
11 2e8v_A Geranylgeranyl pyrophos 100.0 0 0 499.6 17.0 309 13-322 8-338 (340)
12 2qis_A Farnesyl pyrophosphate 100.0 0 0 479.0 24.3 312 6-321 32-373 (374)
13 1uby_A FPS, farnesyl diphospha 100.0 0 0 477.5 22.6 288 30-321 59-366 (367)
14 2ihi_A Pyrophosphate synthase; 100.0 0 0 478.1 20.9 313 6-321 38-395 (395)
15 1yhl_A Farnesyl pyrophosphate 100.0 0 0 466.1 22.3 288 30-321 36-361 (362)
16 3dyh_A Farnesyl pyrophosphate 100.0 0 0 466.4 20.7 288 30-321 58-389 (390)
17 2h8o_A Geranyltranstransferase 100.0 0 0 453.7 23.5 281 1-322 36-335 (335)
18 1v4e_A Octoprenyl-diphosphate 100.0 0 0 456.6 17.2 286 7-310 8-297 (299)
19 1rtr_A Geranyltranstransferase 100.0 0 0 451.2 19.8 276 8-322 6-293 (301)
20 1rqj_A Geranyltranstransferase 100.0 0 0 448.9 21.5 279 4-321 3-298 (299)
21 3ipi_A Geranyltranstransferase 100.0 0 0 449.6 20.9 272 10-319 9-281 (295)
22 2her_A Fragment, farnesyl pyro 100.0 0 0 453.9 14.4 281 30-322 60-360 (368)
23 3pde_A Farnesyl-diphosphate sy 100.0 0 0 437.1 21.6 281 3-322 7-301 (309)
24 3lsn_A Geranyltranstransferase 100.0 0 0 436.0 21.6 280 3-322 2-296 (304)
25 3p8r_A Geranyltranstransferase 100.0 0 0 432.5 23.7 274 8-322 13-302 (302)
26 2ftz_A Geranyltranstransferase 100.0 0 0 434.8 21.6 271 7-320 10-284 (284)
27 3p8l_A Geranyltranstransferase 100.0 0 0 435.7 16.9 245 3-248 9-265 (302)
28 2azj_A Geranylgeranyl pyrophos 100.0 0 0 435.5 15.9 261 3-273 10-275 (289)
29 3lom_A Geranyltranstransferase 100.0 0 0 419.8 20.2 279 4-322 9-303 (313)
30 3m0g_A Farnesyl diphosphate sy 100.0 0 0 417.7 20.3 274 4-321 3-288 (297)
31 3npk_A Geranyltranstransferase 100.0 0 0 419.8 14.7 234 22-258 19-262 (291)
32 2j1p_A Geranylgeranyl pyrophos 100.0 0 0 403.9 21.6 264 6-322 15-293 (293)
33 3llw_A Geranyltranstransferase 100.0 0 0 391.4 16.9 253 2-258 6-277 (311)
34 3kra_B Geranyl diphosphate syn 100.0 0 0 389.5 12.7 237 7-244 4-268 (274)
35 1ezf_A Farnesyl-diphosphate fa 97.6 0.00094 3.9E-08 41.5 11.0 140 135-305 115-254 (340)
36 2zco_A Dehydrosqualene synthas 97.4 0.0062 2.6E-07 36.4 15.1 135 135-304 108-242 (293)
37 3kb9_A EPI-isozizaene synthase 90.9 0.76 3.2E-05 23.6 16.8 162 49-215 90-267 (382)
38 1ps1_A Pentalenene synthase; a 88.6 1.1 4.8E-05 22.5 13.1 160 49-215 50-225 (337)
39 3aqb_A Component A of hexapren 71.7 4.7 0.0002 18.8 5.0 68 59-142 41-108 (147)
40 1yyq_A Trichodiene synthase; t 58.7 8.3 0.00035 17.2 9.2 128 41-177 59-193 (374)
41 3bny_A Aristolochene synthase; 58.2 8.5 0.00036 17.2 7.4 159 47-215 58-225 (320)
42 1di1_A Aristolochene synthase; 46.8 13 0.00054 16.0 9.2 59 155-215 151-211 (300)
43 2c1x_A UDP-glucose flavonoid 3 27.9 26 0.0011 14.2 8.2 93 225-321 356-454 (456)
44 3m00_A Aristolochene synthase; 22.7 33 0.0014 13.6 14.3 168 44-215 266-452 (550)
45 1s7z_A Gene 0.3 protein; all h 21.9 34 0.0014 13.5 2.0 45 66-114 11-55 (117)
46 3hbf_A Flavonoid 3-O-glucosylt 20.4 36 0.0015 13.3 7.4 89 227-319 360-454 (454)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=0 Score=571.80 Aligned_cols=321 Identities=47% Similarity=0.733 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999999999998607787589999999996798227999999999970898578666655789999999875
Q gi|254780755|r 2 KMLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLH 81 (322)
Q Consensus 2 ~~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiH 81 (322)
..+..++..+|..|++.|.+.+.++.|++.++++|++.+||||+||+||+++++++|++.+.++++|+++|+||+|||||
T Consensus 25 ~~~~~~~~~d~~~v~~~i~~~l~s~~~~i~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~aiEliH~asLiH 104 (345)
T 3oyr_A 25 DRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLH 104 (345)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999876882779999999874898517399999999981998789999999999999999986
Q ss_pred HHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 21101122001101210100110234312457888876421024311000123456777777545655421322103578
Q gi|254780755|r 82 DDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDY 161 (322)
Q Consensus 82 DDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y 161 (322)
|||||+|+.|||+||+|.+||+++||++||||++++|..+++..+..+++.++++...+++||+.|.....+...++++|
T Consensus 105 DDi~D~~~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~y 184 (345)
T 3oyr_A 105 DDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVY 184 (345)
T ss_dssp TTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH
T ss_conf 87778875667998857366842888999999999887544111068899999999999731068877622777668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 98998643355554432100011222210157999997311168988764112367000384012345421365321001
Q gi|254780755|r 162 LHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILA 241 (322)
Q Consensus 162 ~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~a 241 (322)
++|+.+|||+||+++|.+|++++|++++..+.+.+||+++|+||||+||++|++|+++.+|||.|+||++||+|||++++
T Consensus 185 l~ii~~KTa~L~~~~~~~ga~~~~~~~~~~~~l~~~G~~lG~AFQI~DDllD~~~~~~~~GK~~g~Dl~egk~Tlp~i~a 264 (345)
T 3oyr_A 185 LEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLA 264 (345)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHCCCCCHHHHHH
T ss_conf 99999987489999998799883799999999998889999999998765413434676277754235249722999999
Q ss_pred HHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 10143110001343203689998999999999997496999999999999999998420899989999999999996037
Q gi|254780755|r 242 FQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 242 l~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
+++.++.+++.+..+++++..+++++++++++++++|++++++++++.|.++|+++|+.||+++.|+.|.+|++|+++|.
T Consensus 265 le~~~~~~~~~l~~~~~~~~~~~~~~~~i~~lv~~~g~i~~a~~~a~~~~~~A~~~L~~lp~s~~k~~L~~L~~~~~~Rk 344 (345)
T 3oyr_A 265 IARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREALEELADFAVSRR 344 (345)
T ss_dssp HHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHHHHHHHHHHHHC-
T ss_pred HHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98699999999999873767999999999999998698999999999999999999866999889999999999998748
Q ss_pred C
Q ss_conf 9
Q gi|254780755|r 322 N 322 (322)
Q Consensus 322 ~ 322 (322)
|
T Consensus 345 s 345 (345)
T 3oyr_A 345 A 345 (345)
T ss_dssp -
T ss_pred C
T ss_conf 9
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=0 Score=566.14 Aligned_cols=320 Identities=45% Similarity=0.717 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4799999999999999999860778-758999999999679822799999999997089857866665578999999987
Q gi|254780755|r 2 KMLEDLTLKDMEKVNFLILKRICSD-VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLL 80 (322)
Q Consensus 2 ~~l~~~~~~~l~~v~~~i~~~~~~~-~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLi 80 (322)
..+.+++.+++++|+..|.+.+.++ .|.+++++.|++.+||||+||+||+++++++|++.+.++++|+++|++|+||||
T Consensus 12 ~~l~~~l~~~l~~v~~~i~~~l~s~~~~~i~~~~~~~~~~gGKr~Rp~l~ll~~~~~~~~~~~~~~~A~aiEliH~asLI 91 (341)
T 3mzv_A 12 DRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLL 91 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999844477167999999998189962889999999998399707799999999999999998
Q ss_pred HHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 52110112200110121010011023431245788887642102431100012345677777754565542132210357
Q gi|254780755|r 81 HDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEED 160 (322)
Q Consensus 81 HDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~ 160 (322)
||||||+|++|||+||+|.+||+++|||+||||++.+|..+++.++.++.+.+++++..+++||..|+.+..+...++++
T Consensus 92 HDDI~D~~~~RRG~pt~~~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~ 171 (341)
T 3mzv_A 92 HDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDI 171 (341)
T ss_dssp HHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHH
T ss_pred CCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHH
T ss_conf 18766678655699975330682499998899999999864213654799999998677606007998750267998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 89899864335555443210001122221015799999731116898876411236700038401234542136532100
Q gi|254780755|r 161 YLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVIL 240 (322)
Q Consensus 161 y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~ 240 (322)
|++|+.+|||+||++||.+||+++|++++..+.+..||+++|+||||+||++|++|+++.+|||+|+|+++||+|||+++
T Consensus 172 yl~~i~~KTa~L~~~~~~~ga~l~~~~~~~~~~l~~~G~~lG~AFQI~DD~ld~~~d~~~~GK~~g~Dl~egk~Tlpli~ 251 (341)
T 3mzv_A 172 YLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIK 251 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHCCCCHHHHHH
T ss_conf 99999999999999999984101179989999999999999999998888765307866638552758656984199999
Q ss_pred HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 11014311000134320368999899999999999749699999999999999999842089998999999999999603
Q gi|254780755|r 241 AFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR 320 (322)
Q Consensus 241 al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R 320 (322)
|+++.++.++..+..+++++..++++++++++++.++|++++|+..++.|.++|++.|+.||+++.|+.|.+|++|+++|
T Consensus 252 al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~lp~s~~k~~L~~L~~~v~~R 331 (341)
T 3mzv_A 252 AVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHPLRQMLDDLADYVVER 331 (341)
T ss_dssp HHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTGG
T ss_pred HHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99869999899999998668999999999999999869899999999999999999986699978999999999999881
Q ss_pred C
Q ss_conf 7
Q gi|254780755|r 321 L 321 (322)
Q Consensus 321 ~ 321 (322)
.
T Consensus 332 ~ 332 (341)
T 3mzv_A 332 V 332 (341)
T ss_dssp G
T ss_pred C
T ss_conf 8
No 3
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
Probab=100.00 E-value=0 Score=553.88 Aligned_cols=318 Identities=29% Similarity=0.448 Sum_probs=300.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999999999998607787589999999996798227999999999970898-57866665578999999987
Q gi|254780755|r 2 KMLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLL 80 (322)
Q Consensus 2 ~~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLi 80 (322)
..+...+.+++++|++.|.+.+.+..|.+.+++.|++.+||||+||+||++++++++++ .+.++++|+++||+|+||||
T Consensus 34 ~~l~~~i~~~l~~ve~~l~~~l~~~~~~l~~~~~~~~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLi 113 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLY 113 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999998826884479999999870896169999999999982999358899999999999999999
Q ss_pred HHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 52110112200110121010011023431245788887642102431100012345677777754565542132210357
Q gi|254780755|r 81 HDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEED 160 (322)
Q Consensus 81 HDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~ 160 (322)
||||||+|++|||+||+|.+||+..||++||||+++++.+++..+. .....+++++.++++||++|+.+..+. .+.++
T Consensus 114 HDDI~D~s~~RRG~pt~~~~~g~~~ail~GD~l~~~a~~~~~~~~~-~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~e~ 191 (360)
T 3lmd_A 114 HDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT-DTVAHFAETFGELVTGQMRETVGPRDT-DPIEH 191 (360)
T ss_dssp HHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHCCTTS-CHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHH
T ss_conf 5686889999999875133357425334064878999999860240-355888887689887778987465666-87999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 89899864335555443210001122221015799999731116898876411236700038401234542136532100
Q gi|254780755|r 161 YLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVIL 240 (322)
Q Consensus 161 y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~ 240 (322)
|++|+++|||+||++||.+|++++|++++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||++||+|||+++
T Consensus 192 y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGK~Tlpvi~ 271 (360)
T 3lmd_A 192 YTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLY 271 (360)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCCCHHHHH
T ss_conf 99999999999999999999998298999999999999999999998778653128854419964469876997579999
Q ss_pred HHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 11014311000134320368999899999999999749699999999999999999842089998999999999999603
Q gi|254780755|r 241 AFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR 320 (322)
Q Consensus 241 al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R 320 (322)
|+++.++ +++.+.+++.++..+++++++++++++++|++++++..++.|.++|++.|+.||+++.|+.|..|++|+++|
T Consensus 272 al~~~~~-~~~~l~~~~~~~~~~~~~i~~i~~ll~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~r~~L~~L~~~v~~R 350 (360)
T 3lmd_A 272 ALREDTP-VGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEALRNLATFTVKR 350 (360)
T ss_dssp HHHCCSH-HHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9985989-999999998187899999999999999859799999999999999999985699978999999999999997
Q ss_pred CC
Q ss_conf 79
Q gi|254780755|r 321 LN 322 (322)
Q Consensus 321 ~~ 322 (322)
+.
T Consensus 351 i~ 352 (360)
T 3lmd_A 351 VG 352 (360)
T ss_dssp TS
T ss_pred CC
T ss_conf 87
No 4
>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3}
Probab=100.00 E-value=0 Score=539.12 Aligned_cols=320 Identities=29% Similarity=0.439 Sum_probs=300.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 479999999999999999986077875-8999999999679822799999999997089857866665578999999987
Q gi|254780755|r 2 KMLEDLTLKDMEKVNFLILKRICSDVE-MIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLL 80 (322)
Q Consensus 2 ~~l~~~~~~~l~~v~~~i~~~~~~~~~-~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLi 80 (322)
..+.+.+.+++..|+..+.+.+....| .+.++++|++.+||||+||.+|+++++++|++++.++++|+++||+|+||||
T Consensus 5 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLI 84 (342)
T 1wy0_A 5 EELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLV 84 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998647678289999999886467454899999999998399868899999999999999998
Q ss_pred HHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 521101122001101210100110234312457888876421024311-----000123456777777545655421322
Q gi|254780755|r 81 HDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQE-----ALEALSLVACTLAEGELRQLSLSKNLD 155 (322)
Q Consensus 81 HDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~-----~~~~~~~~~~~l~~Gq~~d~~~~~~~~ 155 (322)
||||+|+|..|||+||+|.+||+..||++||+|++.++.++++.+++. +...++.+..++++||.+|+.+..+..
T Consensus 85 HDDi~D~~~~RRg~~t~~~~~g~~~ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~ 164 (342)
T 1wy0_A 85 HDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKST 164 (342)
T ss_dssp HHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 58877689876899885310057899888999999999999860477466678899886788898762656654014689
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10357898998643355554432100011222210157999997311168988764112367000384012345421365
Q gi|254780755|r 156 VTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPT 235 (322)
Q Consensus 156 ~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~T 235 (322)
.++++|++|+++|||+||++||.+|++++|++++..+.+++||.++|+||||+||++|++|+++.+|||+|+||++||+|
T Consensus 165 ~~~~~y~~ii~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~g~Dl~~gk~T 244 (342)
T 1wy0_A 165 VTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKT 244 (342)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCH
T ss_conf 99999999999999999999999999983999999999999999999999985564102388776099756410027630
Q ss_pred CCCCHHHHCCCCCCCHHHHHHCCCCC-----------CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 32100110143110001343203689-----------9989999999999974969999999999999999984208999
Q gi|254780755|r 236 LPVILAFQRGTKREKNFWKSTINDGK-----------ISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDS 304 (322)
Q Consensus 236 lpii~al~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~ 304 (322)
||+++|++++++.+++.+.+++++.. .+.+++.+++++++++|++++|+++++.|.++|++.|+.||++
T Consensus 245 lp~i~al~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~ 324 (342)
T 1wy0_A 245 LIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKS 324 (342)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998599999999999873533116654323311589999999999986979999999999999999998669997
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999999996037
Q gi|254780755|r 305 SWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 305 ~~k~~L~~L~~~ii~R~ 321 (322)
+.|+.|..|++|+++|.
T Consensus 325 ~~k~~L~~l~~~i~~R~ 341 (342)
T 1wy0_A 325 KARMDLELLAKFIVERE 341 (342)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 89999999999998688
No 5
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=0 Score=523.11 Aligned_cols=318 Identities=25% Similarity=0.348 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7999999999999999998607787589999999996-----------79822799999999997089857866665578
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIF-----------SGGKRLRPMLTLATALMLEYRGDNHVLLACAI 71 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~-----------~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~i 71 (322)
.+..++......|++.+.+.+.+.+|.+.+++.|++. .||||+||.||+++++++|+++++++++|+++
T Consensus 4 d~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGKr~Rp~l~l~~~~~~g~~~~~~~~~A~ai 83 (352)
T 3nf2_A 4 DVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAV 83 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89999999999999999999854582489999976101222047276789735999999999998198857899999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998752110112200110121010011023431245788887642102431---100012345677777754565
Q gi|254780755|r 72 EFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ---EALEALSLVACTLAEGELRQL 148 (322)
Q Consensus 72 EliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~---~~~~~~~~~~~~l~~Gq~~d~ 148 (322)
||+|+||||||||||+|++|||+||+|.+||++.|||+||+|++.+|.++++.+.. .....++.+...+++||.+|+
T Consensus 84 EllH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~gq~~d~ 163 (352)
T 3nf2_A 84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDI 163 (352)
T ss_dssp HHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999958776799777988060334587999997224899999999864653104677767765031225306999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 54213221035789899864335555443210001122221015799999731116898876411236700038401234
Q gi|254780755|r 149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGED 228 (322)
Q Consensus 149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~D 228 (322)
.+..+...++++|++|+.+|||+||++||.+|++++|++++.++.+.+||+++|+||||+||++|++|+++.+|||+|+|
T Consensus 164 ~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~DDilD~~~~~~~~GK~~g~D 243 (352)
T 3nf2_A 164 SYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSD 243 (352)
T ss_dssp HHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
T ss_conf 87760235699999999867899999999987754126599999999999999999986343442038836759813650
Q ss_pred HHHCCCCCCCCHHHHCCCCCCCHHHHHHCCC-------CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5421365321001101431100013432036-------899989999999999974969999999999999999984208
Q gi|254780755|r 229 FRNGKPTLPVILAFQRGTKREKNFWKSTIND-------GKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCL 301 (322)
Q Consensus 229 l~egk~Tlpii~al~~~~~~~~~~l~~~~~~-------~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~l 301 (322)
|++||+|||+++|++..++.+++ +.+++.+ .+.+++++.++++++.++|++++++.+++.|.++|++.|+.+
T Consensus 244 l~egK~Tlpvi~al~~~~~~~k~-l~~il~~~~~~~~~~~~~~~~i~~~~~li~~~gai~~~~~~a~~~~~~A~~~L~~l 322 (352)
T 3nf2_A 244 LRQRKKSLPVVAALAAGGAASER-LGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAV 322 (352)
T ss_dssp HHTTCCCHHHHHHHHHCSHHHHH-HHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCCCCHHHHHHHHHHCCHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 52495369999999819888899-99998511123343448999999999999987989999999999999999998459
Q ss_pred C-CCHHHHHHHHHHHHHHCCC
Q ss_conf 9-9989999999999996037
Q gi|254780755|r 302 P-DSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 302 p-~~~~k~~L~~L~~~ii~R~ 321 (322)
| +++.|+.|..|++|+++|.
T Consensus 323 ~~~~~~k~~L~~L~~~~v~R~ 343 (352)
T 3nf2_A 323 DMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp CCCHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHC
T ss_conf 999799999999999998809
No 6
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=0 Score=518.32 Aligned_cols=317 Identities=27% Similarity=0.438 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999860778758999999999679822799999999997089857866665578999999987521
Q gi|254780755|r 4 LEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDD 83 (322)
Q Consensus 4 l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDD 83 (322)
++.++.+++.+|++.|.+.+.++.+.+.++.+|++.+||||+||++++++++++|++.+.++++|+++|++|+|||||||
T Consensus 6 ~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEllH~asLIhDD 85 (325)
T 3aqb_B 6 YKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDD 85 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999875578578999999998389851869999999988299878999999999999999998588
Q ss_pred HHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 10112200110121010011023431245788887642102431100012345677777754565542132210357898
Q gi|254780755|r 84 VVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLH 163 (322)
Q Consensus 84 I~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ 163 (322)
|+|+|+.|||+||+|.+||+..||++||++++.++..+....+..+.+.++.+...++.||+.++....+.+.++++|++
T Consensus 86 I~D~~~~RRg~pt~h~~~G~~~ail~Gd~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y~~ 165 (325)
T 3aqb_B 86 YIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLR 165 (325)
T ss_dssp HHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 88899887899876653146899983467888777753213346899999998765411418998886078889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99864335555443210001122221015799999731116898876411236700038401234542136532100110
Q gi|254780755|r 164 VIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQ 243 (322)
Q Consensus 164 ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~ 243 (322)
|++.|||+||+++|.+|++++|.+++..+.+++||.++|+||||+||++|++|+++.+|||+|+||++||+|||++++++
T Consensus 166 ii~~KT~~l~~~~~~~~ail~~~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~~~~GK~~g~Di~egK~T~p~i~al~ 245 (325)
T 3aqb_B 166 RINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIA 245 (325)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 99999999999999999997699756563599999999999983441320358865519870208776996689999999
Q ss_pred CCCCCCCHHHHHHCCCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 14311000134320368--9998999999999997496999999999999999998420899989999999999996037
Q gi|254780755|r 244 RGTKREKNFWKSTINDG--KISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 244 ~~~~~~~~~l~~~~~~~--~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
++++.+++.+.+++++. ..+.+.++.+..++++++ +++++.++..|.++|+++|+.||+++.|..|++|++|+++|.
T Consensus 246 ~~~~~~~~~l~~il~~~~~~~~~e~~~~~~~~~~~~~-i~~a~~~~~~~~~~A~~~l~~lp~~~~k~~L~~l~~~i~~R~ 324 (325)
T 3aqb_B 246 NLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYG-IEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKMLKRV 324 (325)
T ss_dssp HHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTTT
T ss_pred HCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6889779999999850546995999999999997080-999999999999999999866999789999999999997588
No 7
>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis}
Probab=100.00 E-value=0 Score=515.32 Aligned_cols=313 Identities=27% Similarity=0.421 Sum_probs=292.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999986077875899999999967982279999999999708985-786666557899999998752110
Q gi|254780755|r 7 LTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-DNHVLLACAIEFIHTATLLHDDVV 85 (322)
Q Consensus 7 ~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-~~~~~~a~~iEliH~asLiHDDI~ 85 (322)
.+.++|.+|++.|.+.+.+.++.+.++++|++.+||||+||.+++++++++++.. +.+..+|+++||||+|||||||||
T Consensus 13 ~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI~ 92 (335)
T 3n3d_A 13 QVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDDVI 92 (335)
T ss_dssp TTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHTCTTCHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999870788668999999999589855899999999987699977889999999999999999846754
Q ss_pred CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 11220011012101001102343124578888764210-24311000123456777777545655421322103578989
Q gi|254780755|r 86 DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIE-TKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHV 164 (322)
Q Consensus 86 D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~-~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~i 164 (322)
|+|++|||+||+|.+||++.|||+||||++.+|..+.. .....+.+.++.+...+++||..++.+..+.+.++++|+++
T Consensus 93 D~s~~RRg~p~~~~~~g~~~Ail~gd~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y~~~ 172 (335)
T 3n3d_A 93 DDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNE 172 (335)
T ss_dssp TTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHH
T ss_pred CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 79987788533200000889999753999999984000000179999999988999877899987502778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
Q ss_conf 98643355554432100011222210157999997311168988764112367000384012345421365321001101
Q gi|254780755|r 165 IKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQR 244 (322)
Q Consensus 165 i~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~ 244 (322)
+..|||+||.++|.+|++++|++++..+.+++||+++|+||||+||++|++|+++.+|||+|+||++||+|||++++++.
T Consensus 173 i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlpil~ale~ 252 (335)
T 3n3d_A 173 IAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSH 252 (335)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSCCHHHHHHHHHTCCCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf 99868889999999877410242577799999877778898875676532488778698641356569527999999872
Q ss_pred CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 431100013432036899989999999999974969999999999999999984208999899999999999960379
Q gi|254780755|r 245 GTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRLN 322 (322)
Q Consensus 245 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~~ 322 (322)
++++.++.+.. ....+++++++++++++++|++++++++++.|.++|++.|+.+|+++.|+.|.+|++|+++|.+
T Consensus 253 ~~~~~~~~l~~---~~~~~~~~i~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~vi~R~~ 327 (335)
T 3n3d_A 253 APRDFHKLLKK---KQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLLRRDH 327 (335)
T ss_dssp CHHHHHHHHSS---GGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98999999974---6389999999999999987969999999999999999998679998899999999999986899
No 8
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=100.00 E-value=0 Score=501.33 Aligned_cols=321 Identities=25% Similarity=0.312 Sum_probs=287.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH---HHHHHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHH
Q ss_conf 947999999999999999998607787589999---99999679822799999999997089------857866665578
Q gi|254780755|r 1 MKMLEDLTLKDMEKVNFLILKRICSDVEMIPDV---VKYLIFSGGKRLRPMLTLATALMLEY------RGDNHVLLACAI 71 (322)
Q Consensus 1 ~~~l~~~~~~~l~~v~~~i~~~~~~~~~~l~~~---~~~~~~~gGKr~Rp~l~~l~~~~~~~------~~~~~~~~a~~i 71 (322)
+..+.+.+.+++.++.....+.+.+..+++.+. ++|++.+||||+||+||+++++++++ +.+.++++|+++
T Consensus 18 l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~A~ai 97 (380)
T 3lk5_A 18 LDKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASL 97 (380)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999988764113612999999999860178450619999999998288766652379999999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCCHHH----------------CCCHHHHHHHHHHHHHHHHHHHCCCCC-----CCC
Q ss_conf 99999998752110112200110121010----------------011023431245788887642102431-----100
Q gi|254780755|r 72 EFIHTATLLHDDVVDDSALRRGKVAARLV----------------WGNQTSVLVGDFLLSQAFCMVIETKSQ-----EAL 130 (322)
Q Consensus 72 EliH~asLiHDDI~D~~~~RRg~~t~~~~----------------~G~~~Ail~GD~l~~~a~~~l~~~~~~-----~~~ 130 (322)
|++|+||||||||||+|++|||+||+|.+ ||+..||++||++++.+++++++.+.+ ++.
T Consensus 98 EllH~asLIHDDI~D~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~g~~~ail~GD~l~~~a~~ll~~~~~~~~~~~~~~ 177 (380)
T 3lk5_A 98 EFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTR 177 (380)
T ss_dssp HHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999727701599876898637652206799861453077770889999988999999998653167789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 0123456777777545655421322103578989986433-555544321000112222101579999973111689887
Q gi|254780755|r 131 EALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTA-VLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVD 209 (322)
Q Consensus 131 ~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa-~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~D 209 (322)
..++.+..+++.||++|+.+......+.+.|+.++.+||+ ++|++||.+|++++|++++..+.+.+||+++|+||||+|
T Consensus 178 ~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiaFQI~D 257 (380)
T 3lk5_A 178 DAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988888885005688875124310389999999988746999999998876534999999999999999999999988
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCC--CCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 6411236700038401234542136532100110143110001343203--68999899999999999749699999999
Q gi|254780755|r 210 DVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTIN--DGKISVENLKKAFIIMRENRALVDTEYRA 287 (322)
Q Consensus 210 D~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~--~~~~~~~~~~~i~~ll~~~gai~~~~~~~ 287 (322)
|++|++|++..+|||+|+||++||+|||++++++.+++.+++.+..+.. ++..+++++++++++++++|++++++..+
T Consensus 258 D~lD~~g~~~~~GK~~~~Dl~egK~Tlp~i~ale~a~~~~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~ga~~~~~~~~ 337 (380)
T 3lk5_A 258 DLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRI 337 (380)
T ss_dssp HHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 88763089854699743787579721999999985875139999999972578999999999999999879799999999
Q ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf 999999999842089-9989999999999996037
Q gi|254780755|r 288 YSYGQKAKDSLRCLP-DSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 288 ~~~~~~A~~~L~~lp-~~~~k~~L~~L~~~ii~R~ 321 (322)
..|.++|++.|+.+| +++.|+.|..|++++++|.
T Consensus 338 ~~~~~~A~~~L~~l~~~~~~k~~L~~L~~~~~~R~ 372 (380)
T 3lk5_A 338 SQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999997559989799999999999999778
No 9
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8}
Probab=100.00 E-value=0 Score=497.54 Aligned_cols=307 Identities=24% Similarity=0.291 Sum_probs=281.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999999860778758999999999679822799999999997089857866665578999999987521101122001
Q gi|254780755|r 13 EKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRR 92 (322)
Q Consensus 13 ~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RR 92 (322)
..+++.+.+.+.+..|.+.++++|++.+||||+||.|++++++++|++.+.++++|+++||+|+||||||||||+|++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGK~~R~~l~~~~~~~~~~~~~~~~~~A~a~EliH~asLihDDi~D~s~~RR 89 (330)
T 1wmw_A 10 QALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERR 89 (330)
T ss_dssp HHHHHHHHHHTCCSSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEET
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999862897168999999988569640999999999998199878999999999999999998757677999989
Q ss_pred HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q ss_conf 10121010011023431245788887642102-----4311000123456777777545655421--3221035789899
Q gi|254780755|r 93 GKVAARLVWGNQTSVLVGDFLLSQAFCMVIET-----KSQEALEALSLVACTLAEGELRQLSLSK--NLDVTEEDYLHVI 165 (322)
Q Consensus 93 g~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~-----~~~~~~~~~~~~~~~l~~Gq~~d~~~~~--~~~~s~~~y~~ii 165 (322)
|+||+|.+||+++||++||||++++|.++++. .++.++..++++..++++||.+|+.+.. +.+.++++|++++
T Consensus 90 G~pt~h~~~G~~~Ail~Gd~L~a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i 169 (330)
T 1wmw_A 90 GRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMV 169 (330)
T ss_dssp TEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHH
T ss_pred CCCCHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 88049887176320105418888999999986523655399999998864223776342201012232232699999998
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHC
Q ss_conf 864335555-4432100011222210157999997311168988764112367000384012345421365321001101
Q gi|254780755|r 166 KSKTAVLFS-AALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQR 244 (322)
Q Consensus 166 ~~KTa~Lf~-~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~ 244 (322)
..||+++|. +|+.+|++++|.++. +.+.+||+++|+||||+||++|++|++ .+|||+|+||++||+|||+++++++
T Consensus 170 ~~Kta~l~~~~~~~~ga~~ag~~~~--~~l~~~g~~lG~afQi~DDlld~~~~~-~~gK~~g~Dl~~gK~Tlpii~ale~ 246 (330)
T 1wmw_A 170 AHKAAYYTAVAPLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVLNLEGGE-AYGKERAGDLYEGKRTLILLRFLEE 246 (330)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHSCSC-CCSSSTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf 8727888998799988766011257--899999998778999757878753006-4089855076669840999999997
Q ss_pred CCCCCCHHHHHHCCC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHH
Q ss_conf 431100013432036--89998999999999997496999999999999999998420----899989999999999996
Q gi|254780755|r 245 GTKREKNFWKSTIND--GKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRC----LPDSSWKKSLMEVVDFCL 318 (322)
Q Consensus 245 ~~~~~~~~l~~~~~~--~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~----lp~~~~k~~L~~L~~~ii 318 (322)
+++.++..+..++.. ...+.+++++++++++++|++++++.++++|.++|++.|+. +|+++.++.|..|++|++
T Consensus 247 ~~~~~~~~l~~~~~~~~~~~~~~~i~~i~~~i~~~ga~~~~~~~~~~~~~~a~~~l~~~~~~~p~~~~~~~L~~l~~~~~ 326 (330)
T 1wmw_A 247 APPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALV 326 (330)
T ss_dssp SCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999972556689999999999999987929999999999999999999863023998499999999999998
Q ss_pred CCCC
Q ss_conf 0379
Q gi|254780755|r 319 QRLN 322 (322)
Q Consensus 319 ~R~~ 322 (322)
+|.+
T Consensus 327 ~R~~ 330 (330)
T 1wmw_A 327 ERRA 330 (330)
T ss_dssp HC--
T ss_pred HCCC
T ss_conf 7879
No 10
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=0 Score=503.28 Aligned_cols=289 Identities=21% Similarity=0.277 Sum_probs=268.4
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHH
Q ss_conf 87589999999996798227999999999970898578666655789999999875211011220011012101001102
Q gi|254780755|r 26 DVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQT 105 (322)
Q Consensus 26 ~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~ 105 (322)
....+.++++|++.+||||+||.|++++++++|++.+.+..+|+++|++|+||||||||||+|++|||+||+|++||++.
T Consensus 9 ~~~~l~e~~~y~~~~gGKr~Rp~L~~~~~~~~~~~~~~~~~~a~aiEllH~asLIHDDI~D~s~~RRG~pt~h~~~G~~~ 88 (301)
T 2q80_A 9 VQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPS 88 (301)
T ss_dssp HHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHH
T ss_conf 02799999999985899629999999999881998899999999999999999982764679988899997120057388
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34312457888876421024311000123456777777545655421322-10357898998643355554432100011
Q gi|254780755|r 106 SVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLD-VTEEDYLHVIKSKTAVLFSAALEVSSLIA 184 (322)
Q Consensus 106 Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~-~s~~~y~~ii~~KTa~Lf~~~~~~ga~la 184 (322)
|||+||||+++++..+++.+++++++.+++++.++++||.+|+.+..+.. .++++|++|+.+|||+||++||.+|++++
T Consensus 89 Ail~Gd~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf~~~~~~ga~~~ 168 (301)
T 2q80_A 89 VINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFS 168 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998899988887641012489999999999998705045877640256676999999998726999999988877642
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCH
Q ss_conf 22221015799999731116898876411236700038401234542136532100110143110001343203689998
Q gi|254780755|r 185 GVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISV 264 (322)
Q Consensus 185 g~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~ 264 (322)
|.++ .+.+||+++|+||||+||++|++|+++.+|||+|+||++||+|||+++|++..+ ++..+..++.+...++
T Consensus 169 ~~~e----~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~g~Dl~~gk~Tlpvi~al~~~~--~~~~l~~~l~~~~~~~ 242 (301)
T 2q80_A 169 DYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRP--ESTQVQNILRQRTENI 242 (301)
T ss_dssp CCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHST--TCCHHHHHHHHTCCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCC--CHHHHHHHHHCCCCCH
T ss_conf 3568----999999999999986588786018853348871118776983099999988298--3799999985667998
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHCC
Q ss_conf 99999999999749699999999999999999842089998999999-999999603
Q gi|254780755|r 265 ENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLM-EVVDFCLQR 320 (322)
Q Consensus 265 ~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~-~L~~~ii~R 320 (322)
+.+++++++++++|++++++.++..|.++|++.|+.+|.++.++.|. .|+.++..|
T Consensus 243 ~~~~~i~~~l~~~ga~~~~~~~~~~~~~~A~~~l~~l~~~~~~~~L~~~l~~~~~~r 299 (301)
T 2q80_A 243 DIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEE 299 (301)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999999998695999999999999999999970999989999999999999854
No 11
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=0 Score=499.60 Aligned_cols=309 Identities=20% Similarity=0.296 Sum_probs=271.3
Q ss_pred HHHHHHHHHHC---CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 99999999860---778758999999999679822799999999997089857866665578999999987521101122
Q gi|254780755|r 13 EKVNFLILKRI---CSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSA 89 (322)
Q Consensus 13 ~~v~~~i~~~~---~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~ 89 (322)
++|+..+.+.. .+..+.+.++++|++.+||||+||.|++++++++|++.++++.+|+++|++|+||||||||||+|+
T Consensus 8 ~~i~~~~~~~~~~~~~~~~~l~~~~~y~~~~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~aiEllH~asLihDDI~D~~~ 87 (340)
T 2e8v_A 8 AKIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDNAP 87 (340)
T ss_dssp HHHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999985076678634089999999998289951999999999988399889999999999999999998777777999
Q ss_pred HHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHH
Q ss_conf 00110121010011023431245788887642102431-----1000123456777777545655421---322103578
Q gi|254780755|r 90 LRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ-----EALEALSLVACTLAEGELRQLSLSK---NLDVTEEDY 161 (322)
Q Consensus 90 ~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~-----~~~~~~~~~~~~l~~Gq~~d~~~~~---~~~~s~~~y 161 (322)
+|||+||+|++||++.|||+||||++++++++++..++ .++..+++++..+++||++|+.+.. +...++++|
T Consensus 88 ~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~t~e~Y 167 (340)
T 2e8v_A 88 LRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMY 167 (340)
T ss_dssp EETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHH
T ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHH
T ss_conf 86887079987596066763458999999988760772178999999986501444235320334331025676779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 98998643355554432100011222210157999997311168988764112367000384012345421365321001
Q gi|254780755|r 162 LHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILA 241 (322)
Q Consensus 162 ~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~a 241 (322)
++|+.+|||+||++||.+|++++|.++ ..+.+.+||.++|+||||+||++|++|+++.+|||+|+||++||+|||+++|
T Consensus 168 ~~ii~~KTa~Lf~~a~~~ga~lag~~~-~~~~l~~~g~~lGiaFQI~DD~lD~~~d~~~~GK~~~~Dl~egK~Tlpvi~a 246 (340)
T 2e8v_A 168 LNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHA 246 (340)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHCCCCCCHHHHCCCCCHHHHHH
T ss_conf 999998879999999999998613303-3168999999999998033256550398533499765288769642999999
Q ss_pred HHCCCC----CCCHHHHHHCCCCCCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHH-----HHHCCC-CCHHHHHH
Q ss_conf 101431----1000134320368999899999999999-749699999999999999999-----842089-99899999
Q gi|254780755|r 242 FQRGTK----REKNFWKSTINDGKISVENLKKAFIIMR-ENRALVDTEYRAYSYGQKAKD-----SLRCLP-DSSWKKSL 310 (322)
Q Consensus 242 l~~~~~----~~~~~l~~~~~~~~~~~~~~~~i~~ll~-~~gai~~~~~~~~~~~~~A~~-----~L~~lp-~~~~k~~L 310 (322)
++.++. +++..+.+++.++..+.+...++++.+. ++|++++++..+.++.+.+.+ .|..++ .+..+..|
T Consensus 247 l~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~i~~l~~~~gal~~a~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~l 326 (340)
T 2e8v_A 247 LNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNL 326 (340)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC-------------------
T ss_pred HHHCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98666513759999999998478999899999999998861699999999999999855471888889876136999999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999960379
Q gi|254780755|r 311 MEVVDFCLQRLN 322 (322)
Q Consensus 311 ~~L~~~ii~R~~ 322 (322)
.+++.|+++|++
T Consensus 327 ~~~~~~li~r~~ 338 (340)
T 2e8v_A 327 HDELLYIIDHLS 338 (340)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999885
No 12
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* 3n1w_F* 3n3l_F* 2f94_F* ...
Probab=100.00 E-value=0 Score=479.02 Aligned_cols=312 Identities=18% Similarity=0.191 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHHHHHCCC---CCHH-------HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-------HHHHHHH
Q ss_conf 99999999999999986077---8758-------99999999967982279999999999708985-------7866665
Q gi|254780755|r 6 DLTLKDMEKVNFLILKRICS---DVEM-------IPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-------DNHVLLA 68 (322)
Q Consensus 6 ~~~~~~l~~v~~~i~~~~~~---~~~~-------l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-------~~~~~~a 68 (322)
.....++..+-+.|.+.+.. .+|. +.+++.|-+ .||||+||++|++++++++++. +.++.+|
T Consensus 32 ~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~Y~~-~GGKr~R~llv~~~~~~l~~~~~~~~e~~~~a~~~a 110 (374)
T 2qis_A 32 AQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVG 110 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999987641269870579999999985757-883107599999999986486568867899999999
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCH-HHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHHH
Q ss_conf 578999999987521101122001101210100110-234312457888876421024-----31100012345677777
Q gi|254780755|r 69 CAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQ-TSVLVGDFLLSQAFCMVIETK-----SQEALEALSLVACTLAE 142 (322)
Q Consensus 69 ~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~-~Ail~GD~l~~~a~~~l~~~~-----~~~~~~~~~~~~~~l~~ 142 (322)
+|||+||+||||||||||+|++|||+||+|++||++ .||+.||+|++.++.++.... ..++++.+++++..+++
T Consensus 111 ~~iEllH~asLvhDDImD~s~~RRG~pt~~~~~G~~~~Ai~~gd~L~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~~ 190 (374)
T 2qis_A 111 WCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEI 190 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986763699888998353457885388995199999999999998423563799999999999999987
Q ss_pred HHHHHHHHHCCCC-----CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 7545655421322-----10357898998643355-55443210001122221-01579999973111689887641123
Q gi|254780755|r 143 GELRQLSLSKNLD-----VTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQNS-VRQALKSYGMNLGIAFQLVDDVLDYR 215 (322)
Q Consensus 143 Gq~~d~~~~~~~~-----~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~~~-~~~~l~~fG~~lG~afQI~DD~ld~~ 215 (322)
||++|+.+..+.. .++++|++|+.+|||+| |.+|+.+|++++|.+.+ ..+.+.+||.++|+||||+||+||++
T Consensus 191 GQ~lDl~~~~~~~~d~~~~t~~~Y~~ii~~KTa~l~~~~~~~~~~~~ag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~ 270 (374)
T 2qis_A 191 GQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp HHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 59999883125666643167999999999986688999999988640110188899888789999999895123555401
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 67000384012345421365321001101431100013432036899989999999999974969999999999999999
Q gi|254780755|r 216 GEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAK 295 (322)
Q Consensus 216 g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~ 295 (322)
|+++.+|| +|+||++||+|||+++|++++++++++.|.++++++ +++.++++.++++++|+.+++.+.++.+.+++.
T Consensus 271 gd~~~~GK-~g~Di~egK~Tlpvi~ale~a~~e~r~~L~~~~g~~--d~e~v~~vk~l~~~~g~~~~~~~~~~~~~~~a~ 347 (374)
T 2qis_A 271 GDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK--EAEKVARVKALYEELDLPAVFLQYEEDSYSHIM 347 (374)
T ss_dssp SCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCC-CCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89566488-665776694119999999829999999999986799--989999999999987889999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98420899989999999999996037
Q gi|254780755|r 296 DSLRCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 296 ~~L~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
..|+.+|.+..++.|..|++++++|.
T Consensus 348 ~~i~~l~~~~~~~~L~~l~~~i~~R~ 373 (374)
T 2qis_A 348 ALIEQYAAPLPPAVFLGLARKIYKRR 373 (374)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHC---
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99981899267999999999997088
No 13
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=0 Score=477.48 Aligned_cols=288 Identities=20% Similarity=0.244 Sum_probs=254.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCC
Q ss_conf 999999999679822799999999997089857-------8666655789999999875211011220011012101001
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGD-------NHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWG 102 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~-------~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G 102 (322)
+.++..|.+ .||||+||++|++++++++++.. .++++|+++|+||+||||||||||+|++|||+||+|++||
T Consensus 59 l~~~l~y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~~~~~~a~~~a~aiEliH~asLvhDDI~D~s~~RRG~pt~h~~~g 137 (367)
T 1uby_A 59 LKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKKEG 137 (367)
T ss_dssp HHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTT
T ss_pred HHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 999984656-8863266999999999857997666678999999999999999999998264407887789833101120
Q ss_pred CHHHHHHHHHHHHHHHHHH-HCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHH
Q ss_conf 1023431245788887642-1024-----31100012345677777754565542132-----21035789899864335
Q gi|254780755|r 103 NQTSVLVGDFLLSQAFCMV-IETK-----SQEALEALSLVACTLAEGELRQLSLSKNL-----DVTEEDYLHVIKSKTAV 171 (322)
Q Consensus 103 ~~~Ail~GD~l~~~a~~~l-~~~~-----~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~-----~~s~~~y~~ii~~KTa~ 171 (322)
++.||+.||+|++.++..+ .... ..++++.+++++.++++||++|+.+.... ..++++|++|+++|||+
T Consensus 138 ~~~ail~gd~ll~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~t~~~y~~ii~~KTa~ 217 (367)
T 1uby_A 138 VGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAF 217 (367)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 43888711348999999999872546558999999999988888999999997312444454327899999999998888
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCC
Q ss_conf 5--55443210001122221015799999731116898876411236700038401234542136532100110143110
Q gi|254780755|r 172 L--FSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKRE 249 (322)
Q Consensus 172 L--f~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~ 249 (322)
| |..+|..++++++.+++..+.+..||.++|+||||+||++|++|+++.+|| +|+||++||+|||++++++.+++++
T Consensus 218 ls~~~~~~~~~~~~g~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~gk-~g~Di~egK~Tlpvi~al~~~~~~~ 296 (367)
T 1uby_A 218 YSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQ 296 (367)
T ss_dssp HHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCCHHHCCCHHHHHHHHHHHCCHHH
T ss_conf 888999998733222220377877765530005767731467660289666198-5537657952599999998499999
Q ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 001343203689998999999999997496999999999999999998420899989999999999996037
Q gi|254780755|r 250 KNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
++.+..+++++ +++++++++++++++|+.+++++.++.+.+++.+.++.+|++..|+.|..|++++++|.
T Consensus 297 r~~l~~~~~~~--~~~~i~~v~~li~~~g~~~~~~~~~~~~~~~a~~~i~~~~~~~~k~~L~~L~~~i~~R~ 366 (367)
T 1uby_A 297 RQLLEDNYGRK--EPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQ 366 (367)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHHHHHCCCC
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999986799--99999999999998795999999999999999999870798189999999999997587
No 14
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3mys_A*
Probab=100.00 E-value=0 Score=478.14 Aligned_cols=313 Identities=19% Similarity=0.222 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHH--H---HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHH
Q ss_conf 999999999999999860778758--9---9999999967982279999999999708985------7866665578999
Q gi|254780755|r 6 DLTLKDMEKVNFLILKRICSDVEM--I---PDVVKYLIFSGGKRLRPMLTLATALMLEYRG------DNHVLLACAIEFI 74 (322)
Q Consensus 6 ~~~~~~l~~v~~~i~~~~~~~~~~--l---~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~------~~~~~~a~~iEli 74 (322)
+.+.+....+...+.+..-.+.+. + .+.+.++..+||||+||++|+++++++++.. +.++.+|+|+|++
T Consensus 38 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~y~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~a~aiEll 117 (395)
T 2ihi_A 38 NMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEIL 117 (395)
T ss_dssp TTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999998755777426789999999998667888400649999999998189988840399999999999999
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHH--HHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999875211011220011012101001102343124578--8887642102-----43110001234567777775456
Q gi|254780755|r 75 HTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLL--SQAFCMVIET-----KSQEALEALSLVACTLAEGELRQ 147 (322)
Q Consensus 75 H~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~--~~a~~~l~~~-----~~~~~~~~~~~~~~~l~~Gq~~d 147 (322)
|+||||||||||+|++|||+||+|++||++.||++||+++ +.++.++... ...++++.++++...+|+||++|
T Consensus 118 H~asLIHDDI~D~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~GQ~lD 197 (395)
T 2ihi_A 118 QAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLD 197 (395)
T ss_dssp HHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999985741488988997114116781588883519999999999998732581669999999999999999999999
Q ss_pred HHHHCC------------------------CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 554213------------------------2210357898998643355-554432100011222--2101579999973
Q gi|254780755|r 148 LSLSKN------------------------LDVTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQ--NSVRQALKSYGMN 200 (322)
Q Consensus 148 ~~~~~~------------------------~~~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~--~~~~~~l~~fG~~ 200 (322)
+.+..+ ..+++++|++|+.+|||+| |.+|+.+|++++|.+ ++..+.+++||++
T Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~ag~~~d~~~~~~l~~~g~~ 277 (395)
T 2ihi_A 198 TNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISML 277 (395)
T ss_dssp HHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99886012046666520011210000122243899999999997548999999999999860463008999999999999
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf 11168988764112367000384012345421365321001101431100013432036899989999999999974969
Q gi|254780755|r 201 LGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRAL 280 (322)
Q Consensus 201 lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai 280 (322)
+|+||||+||++|++|+++.+|| +|+||++||+|||+++|++.++++++..+.+++++. +++.++.+.+++.++|+.
T Consensus 278 lGiaFQI~DD~lD~~gd~~~~GK-~g~Di~egK~Tlp~i~al~~~~~~~r~~L~~~~~~~--d~~~~~~i~~l~~~~g~~ 354 (395)
T 2ihi_A 278 MGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN--NLACVKVIDSLYEQYKIR 354 (395)
T ss_dssp HHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-C--CHHHHHHHHHC----CHH
T ss_pred HHHHHHHHHHHHHCCCCHHHCCC-CCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHH
T ss_conf 99999986687761089533597-115776796169999999969999999999986799--979999999999976929
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999998420899989999999999996037
Q gi|254780755|r 281 VDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 281 ~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
+++...++.+.+++.+.++.+|+...+..|..+++.+.+|+
T Consensus 355 ~~~~~~~~~~~~~a~~~i~~l~~~~l~~ll~~lle~i~k~~ 395 (395)
T 2ihi_A 355 KHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999997873683899999999999871589
No 15
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=0 Score=466.05 Aligned_cols=288 Identities=18% Similarity=0.226 Sum_probs=251.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCH
Q ss_conf 99999999967982279999999999708985-----------7866665578999999987521101122001101210
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-----------DNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAAR 98 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-----------~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~ 98 (322)
+.+...|.+ +||||+||++++++++++++.. ..+..+|++||++|+||||||||||+|++|||+||+|
T Consensus 36 ~~~~~~y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~iEllH~asLihDDI~D~s~~RRG~pt~h 114 (362)
T 1yhl_A 36 LRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWY 114 (362)
T ss_dssp HHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGG
T ss_pred HHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 999996457-8853102799999999963643455432567789999999999999999999732267998889998742
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHCC----------------CC
Q ss_conf 100110234312457888876421024-------3110001234567777775456554213----------------22
Q gi|254780755|r 99 LVWGNQTSVLVGDFLLSQAFCMVIETK-------SQEALEALSLVACTLAEGELRQLSLSKN----------------LD 155 (322)
Q Consensus 99 ~~~G~~~Ail~GD~l~~~a~~~l~~~~-------~~~~~~~~~~~~~~l~~Gq~~d~~~~~~----------------~~ 155 (322)
++||++.||++||+|++.++..+.... ..++++.++++...++.||++|+.+... .+
T Consensus 115 ~~~G~~~ai~~gD~l~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~d~e~~~~~~~~~~~ 194 (362)
T 1yhl_A 115 RFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAE 194 (362)
T ss_dssp GSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCHH
T ss_conf 30681899996639999999999987524684558999999999999999998704124404631118988630256200
Q ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 10357898998643355-55443210001122221-01579999973111689887641123670003840123454213
Q gi|254780755|r 156 VTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQNS-VRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGK 233 (322)
Q Consensus 156 ~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~~~-~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk 233 (322)
+|+++|++|+.+|||+| |.+|+.+|++++|.+++ ..+.++.||.++|+||||+||++|++|+++.+|| +|+||++||
T Consensus 195 ~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~~g~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~~d~~~~GK-~g~Dl~egK 273 (362)
T 1yhl_A 195 FTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAK 273 (362)
T ss_dssp CSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CHHHHHCCC
T ss_conf 5899999999998746789999987787713631889988876787999999999998870079788687-446787697
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHH
Q ss_conf 653210011014311000134320368999899999999999749699999999999999999842089--998999999
Q gi|254780755|r 234 PTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLP--DSSWKKSLM 311 (322)
Q Consensus 234 ~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp--~~~~k~~L~ 311 (322)
+|||+++|++.+++++++.+.++++++ ++++++.+.+++.++|+.+++...++++.+++.+.++.++ ++..++.|.
T Consensus 274 ~Tlp~i~al~~~~~~~~~~l~~~~~~~--d~~~v~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 351 (362)
T 1yhl_A 274 CSWLAVTFLGKANAAQVAEFKANYGDK--DPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVA 351 (362)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 359999999809999999999986899--989999999999986979999999999999999999867578768999999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999996037
Q gi|254780755|r 312 EVVDFCLQRL 321 (322)
Q Consensus 312 ~L~~~ii~R~ 321 (322)
.+++++.+|.
T Consensus 352 ~~~~~i~kR~ 361 (362)
T 1yhl_A 352 VVWEKTHKRK 361 (362)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHCCC
T ss_conf 9999997488
No 16
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=0 Score=466.44 Aligned_cols=288 Identities=20% Similarity=0.242 Sum_probs=252.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 99999999967982279999999999708985-----------------7866665578999999987521101122001
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-----------------DNHVLLACAIEFIHTATLLHDDVVDDSALRR 92 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-----------------~~~~~~a~~iEliH~asLiHDDI~D~~~~RR 92 (322)
+.+...|.+ .||||+||++|+++++++.+.. ..+..+|+++|+||+||||||||||+|++||
T Consensus 58 ~~~~~~y~~-~GGKr~Rp~lv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~la~~iEllH~asLihDDImD~s~~RR 136 (390)
T 3dyh_A 58 LRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRR 136 (390)
T ss_dssp HHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEET
T ss_pred HHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999996546-8854202399999999971668664310000001245689999999999999999998710357998879
Q ss_pred HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHCC------------
Q ss_conf 101210100110234312457888876421024-------3110001234567777775456554213------------
Q gi|254780755|r 93 GKVAARLVWGNQTSVLVGDFLLSQAFCMVIETK-------SQEALEALSLVACTLAEGELRQLSLSKN------------ 153 (322)
Q Consensus 93 g~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~-------~~~~~~~~~~~~~~l~~Gq~~d~~~~~~------------ 153 (322)
|+||+|++||++.||++||++++.++..+.... ..++++.++++...++.||++|+.+..+
T Consensus 137 G~pt~h~~~g~~~ai~~gD~ll~~a~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~ 216 (390)
T 3dyh_A 137 GKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPT 216 (390)
T ss_dssp TEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCC
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 99750313674888998229999999999985236671569999999999999998888864430102412347776302
Q ss_pred ----CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf ----2210357898998643355-554432100011222-2101579999973111689887641123670003840123
Q gi|254780755|r 154 ----LDVTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQ-NSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE 227 (322)
Q Consensus 154 ----~~~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~-~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~ 227 (322)
.++|+++|++|+++|||+| |.+|+.+|++++|.. ++..+.+.+||.++|+||||+||++|++|+++.+|| +|+
T Consensus 217 ~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~ 295 (390)
T 3dyh_A 217 TTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGT 295 (390)
T ss_dssp CSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-CHH
T ss_conf 2343217999999999977669999999999897705117889988988899999999999998870089678697-456
Q ss_pred HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC--CH
Q ss_conf 4542136532100110143110001343203689998999999999997496999999999999999998420899--98
Q gi|254780755|r 228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPD--SS 305 (322)
Q Consensus 228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~--~~ 305 (322)
||++||+|||+++|++.+++++++.+..++++. +++.++++.+++.++++.+++.+.++.+.+.+.+.++.+|. ..
T Consensus 296 Dl~egK~Tlp~i~al~~~~~~~r~~l~~~~~~~--d~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 373 (390)
T 3dyh_A 296 DIQDAKCSWLAVTFLAKASSAQVAEFKANYGSG--DSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPG 373 (390)
T ss_dssp TTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCC--CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 787698339999999859999999999986799--879999999999985988999999999999999999847347857
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 9999999999996037
Q gi|254780755|r 306 WKKSLMEVVDFCLQRL 321 (322)
Q Consensus 306 ~k~~L~~L~~~ii~R~ 321 (322)
.++.|..+++++.+|.
T Consensus 374 ~~~~l~~ll~~i~kR~ 389 (390)
T 3dyh_A 374 FAASVETLWGKTYKRQ 389 (390)
T ss_dssp HHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999997689
No 17
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=0 Score=453.67 Aligned_cols=281 Identities=26% Similarity=0.408 Sum_probs=244.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 94799999999999999999860778--------7589999999996798227999999999970898578666655789
Q gi|254780755|r 1 MKMLEDLTLKDMEKVNFLILKRICSD--------VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIE 72 (322)
Q Consensus 1 ~~~l~~~~~~~l~~v~~~i~~~~~~~--------~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iE 72 (322)
|..+...+++...+|++.+.+.+... ++.+.++++|.+.+||||+||+||+++++++|++.+.++++|+++|
T Consensus 36 ~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~~~p~~l~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~AaaiE 115 (335)
T 2h8o_A 36 MTNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALE 115 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 76799999999999999999866752344445798789999999862684109999999999982998789999999999
Q ss_pred HHHHHHHHHHHHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH---------HH
Q ss_conf 9999998752110--112200110121010011023431245788887642102431100012345677---------77
Q gi|254780755|r 73 FIHTATLLHDDVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACT---------LA 141 (322)
Q Consensus 73 liH~asLiHDDI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~---------l~ 141 (322)
|||+||||||||+ |+|++|||+||+|++||+++|||+||+|++.+|++++..++..........+.. ++
T Consensus 116 liH~aSLIHDDI~~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~i~~l~~~~~~~g~~ 195 (335)
T 2h8o_A 116 CLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMA 195 (335)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999779876887633389865030518599999999999988899885122046788899999999999998886
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 77545655421322103578989986433555544321000112222101579999973111689887641123670003
Q gi|254780755|r 142 EGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEM 221 (322)
Q Consensus 142 ~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~ 221 (322)
.||..+.. ..+...++++|++|+++|||+||++||.+|++++|++++..+.+.+||+++|+||||+||++|++|+++.+
T Consensus 196 ~~~~~~~~-~~~~~~~~~~~~~i~~~KTg~L~~~a~~~ga~l~~~~~~~~~~l~~~g~~lGlAFQI~DDilD~~gd~~~~ 274 (335)
T 2h8o_A 196 GGQALDLA-AEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATM 274 (335)
T ss_dssp HHHHHHHH-HHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHH-HCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 46888876-30454248999876202477989989998898804616799999999986302677555766511898886
Q ss_pred CCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 84012345421365321001101431100013432036899989999999999974969999999999999999984208
Q gi|254780755|r 222 GKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCL 301 (322)
Q Consensus 222 GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~l 301 (322)
|||+|+|+++||+|||++++++ .+++.++++.++|++.|+.+
T Consensus 275 GK~~g~Dl~~gK~T~~~l~gle--------------------------------------~a~~~~~~~~~~a~~~l~~~ 316 (335)
T 2h8o_A 275 GKATGKDAARGKGTLVALRGEA--------------------------------------WAREKLQEQVAEASELLAPY 316 (335)
T ss_dssp -----------CCCHHHHHCHH--------------------------------------HHHHHHHHHHHHHHHHTGGG
T ss_pred CCCHHHHHHCCCCCHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHC
T ss_conf 9862278875985399999899--------------------------------------99999999999999988756
Q ss_pred CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999999999960379
Q gi|254780755|r 302 PDSSWKKSLMEVVDFCLQRLN 322 (322)
Q Consensus 302 p~~~~k~~L~~L~~~ii~R~~ 322 (322)
+.. .+.|.++++|+++|.|
T Consensus 317 ~~~--~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 317 GEK--AAILIAAARFIAERKS 335 (335)
T ss_dssp GGG--GHHHHHHHHHHHC---
T ss_pred CHH--HHHHHHHHHHHHHCCC
T ss_conf 735--8999999999987679
No 18
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=0 Score=456.59 Aligned_cols=286 Identities=26% Similarity=0.411 Sum_probs=250.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998607787589999999996798227999999999970898-5786666557899999998752110
Q gi|254780755|r 7 LTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLLHDDVV 85 (322)
Q Consensus 7 ~~~~~l~~v~~~i~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLiHDDI~ 85 (322)
....|+++|++.+.+.+. +.+.+.+.|.+..||||+||.+|+++++++|++ +++++.+|+|+|++|+|||||||||
T Consensus 8 ~~~~el~~v~~~i~~~l~---~~~~~~~~~~~~~~GKr~R~~l~l~~~~~~g~~~~~~~~~~AaaiEllH~asLihDDI~ 84 (299)
T 1v4e_A 8 QNSYELEKVKERIEQILS---QFFPEQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVI 84 (299)
T ss_dssp -CHHHHHHHHHHHHHHHH---HHSCHHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 349999999999999998---86569998676468862999999999998399963779999999999999999867843
Q ss_pred CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 11220011012101001102343124578888764210243110001234567777775456554213221035789899
Q gi|254780755|r 86 DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVI 165 (322)
Q Consensus 86 D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii 165 (322)
|+|++|||+||+|++||++.||++||+|++.++.+++..+++.....++.++..+++||++|+.+..+ ..++++|++|+
T Consensus 85 D~s~~RRG~pt~~~~~g~~~ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~t~~~y~~ii 163 (299)
T 1v4e_A 85 DGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYK-PITKEEYLRIV 163 (299)
T ss_dssp HTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHH
T ss_conf 59999888002466622258998244377776552000101788888887643003578788872279-99999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCC
Q ss_conf 86433555544321000112222101579999973111689887641123670003840123454213653210011014
Q gi|254780755|r 166 KSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRG 245 (322)
Q Consensus 166 ~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~ 245 (322)
.+|||+||++||.+|++++|... +.+++||+++|+||||+||++|++|++ .+|||+|+||++||+|||+++|++++
T Consensus 164 ~~KTa~lf~~~~~~gai~ag~~~---~~l~~~g~~lG~afQi~DD~lD~~g~~-~~GK~~g~Dl~~gk~T~pii~al~~~ 239 (299)
T 1v4e_A 164 EGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKF 239 (299)
T ss_dssp HHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTCC-SCCTTSSCCCTTTTCCHHHHHHHHHC
T ss_pred HHHHHHHHHCCHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHCCCCHHHHHHHHHHC
T ss_conf 86210126310467777547616---689999999999999769989735288-64995100876797309999999859
Q ss_pred CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHH
Q ss_conf 311000134320368999899999999999749699999999999999999842---08999899999
Q gi|254780755|r 246 TKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLR---CLPDSSWKKSL 310 (322)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~---~lp~~~~k~~L 310 (322)
++.++. + .+ +++++++++++++|+++++++.++.+.++|..... .+|++..|..|
T Consensus 240 ~~~~~~-~----~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~l~~~~d~i~k~~l 297 (299)
T 1v4e_A 240 PEARQM-F----EN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFVDGIFKIKI 297 (299)
T ss_dssp HHHHHH-H----HT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC---------
T ss_pred HHHHHH-H----HH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599999-8----77-----7899999999984969999999999999988746688885289999985
No 19
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=0 Score=451.21 Aligned_cols=276 Identities=29% Similarity=0.411 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999860778--75899999999967982279999999999708985786666557899999998752110
Q gi|254780755|r 8 TLKDMEKVNFLILKRICSD--VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVV 85 (322)
Q Consensus 8 ~~~~l~~v~~~i~~~~~~~--~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~ 85 (322)
+.+.+++|++.|...+... ++.+.+++.|++.+||||+||.||+++++++|++.+.++++|+++||+|+||||||||+
T Consensus 6 ~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~y~l~~GGKr~Rp~L~l~~~~~~~~~~~~~~~~A~aiEllH~asLIhDDI~ 85 (301)
T 1rtr_A 6 MNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLP 85 (301)
T ss_dssp HHHHHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999861135887899999988739974786999999998849975889999999999999999972773
Q ss_pred C--HHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH--------HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1--122001101210100110234312457888876421024311000--------123456777777545655421322
Q gi|254780755|r 86 D--DSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALE--------ALSLVACTLAEGELRQLSLSKNLD 155 (322)
Q Consensus 86 D--~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~--------~~~~~~~~l~~Gq~~d~~~~~~~~ 155 (322)
| ++..|||+||+|.+||++.||++||++++.++.+++...+..... .++.....+++||++|+.+.. ..
T Consensus 86 D~d~~~~RRg~~~~~~~~g~~~ail~gd~l~~~a~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~GQ~lDl~~~~-~~ 164 (301)
T 1rtr_A 86 AMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEG-QP 164 (301)
T ss_dssp TTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-SC
T ss_pred CCCCCCCCCCCCCHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC
T ss_conf 35877422456547887521312653771788999999853430278999999999998659999876999998248-99
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 10357898998643355554432100011222210157999997311168988764112367000384012345421365
Q gi|254780755|r 156 VTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPT 235 (322)
Q Consensus 156 ~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~T 235 (322)
+++++|+.|+++|||+||++|+.+||+++|++++..+.+.+||.++|+||||+||++|++|+++.+|||+|+||++||+|
T Consensus 165 ~~~~~y~~i~~~KT~~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~~~~GK~~g~Dl~egK~T 244 (301)
T 1rtr_A 165 IDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKST 244 (301)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHCCCHHHHHHCCCCC
T ss_conf 99999999999999999999999999871573777999999998722101223088773488888599842387759862
Q ss_pred CCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 32100110143110001343203689998999999999997496999999999999999998420899989999999999
Q gi|254780755|r 236 LPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVD 315 (322)
Q Consensus 236 lpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~ 315 (322)
||++++++. +.+.+..+.+++.+.|..+++....+.|.++++
T Consensus 245 l~~i~a~~~--------------------------------------a~~~~~~~~~~a~~~l~~~~~~~~~~~l~el~~ 286 (301)
T 1rtr_A 245 YVSLLGKDG--------------------------------------AEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVD 286 (301)
T ss_dssp HHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHH
T ss_pred HHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999--------------------------------------999999999999999986757255999999999
Q ss_pred HHHCCCC
Q ss_conf 9960379
Q gi|254780755|r 316 FCLQRLN 322 (322)
Q Consensus 316 ~ii~R~~ 322 (322)
|+++|-|
T Consensus 287 ~i~~R~~ 293 (301)
T 1rtr_A 287 LFYSRDH 293 (301)
T ss_dssp HHHCC--
T ss_pred HHHHHHC
T ss_conf 9996426
No 20
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=0 Score=448.91 Aligned_cols=279 Identities=28% Similarity=0.433 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999986077---8758999999999679822799999999997089857866665578999999987
Q gi|254780755|r 4 LEDLTLKDMEKVNFLILKRICS---DVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLL 80 (322)
Q Consensus 4 l~~~~~~~l~~v~~~i~~~~~~---~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLi 80 (322)
+.+.+....++|++.+.+.+.. ..+++.++++|.+.+||||+||++++++++++|++.+.++++|+++|++|+||||
T Consensus 3 ~~~~l~~~~~~i~~~l~~~~~~~~~~~~~l~e~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEllH~asLI 82 (299)
T 1rqj_A 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 49999999999999999987626788807999999987179751889999999988099867899999999999999999
Q ss_pred HHHHHC--HHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----CHHHH-----HHHHHHHHHHHHHH
Q ss_conf 521101--1220011012101001102343124578888764210243110-----00123-----45677777754565
Q gi|254780755|r 81 HDDVVD--DSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEA-----LEALS-----LVACTLAEGELRQL 148 (322)
Q Consensus 81 HDDI~D--~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~-----~~~~~-----~~~~~l~~Gq~~d~ 148 (322)
||||+| ++++|||+||+|++||++.||++||++++.++..++..+++.+ +..+. ..+..+++||.+|+
T Consensus 83 hDDI~D~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~lDl 162 (299)
T 1rqj_A 83 HDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDL 162 (299)
T ss_dssp HHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 80560245221003698501131620666651177889999998578953337899999999999875999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 5421322103578989986433555544321000112-222101579999973111689887641123670003840123
Q gi|254780755|r 149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAG-VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE 227 (322)
Q Consensus 149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~ 227 (322)
.+..+ ..++++|++|+++|||+||.+++.+|++++| .+++..+.+++||.++|+||||+||++|++|+++.+|||.|+
T Consensus 163 ~~~~~-~~~~~~y~~i~~~KTa~l~~~~~~~~a~~~~~~~~~~~~~~~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~g~ 241 (299)
T 1rqj_A 163 DAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGA 241 (299)
T ss_dssp HTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTH
T ss_pred HHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHCCCHHH
T ss_conf 81178-99999999999999999999999988998454056899999998899999998510877622888660996514
Q ss_pred HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC-CHH
Q ss_conf 4542136532100110143110001343203689998999999999997496999999999999999998420899-989
Q gi|254780755|r 228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPD-SSW 306 (322)
Q Consensus 228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~-~~~ 306 (322)
|+++||+|||+++++++ ++...+++.+++++.|+.+++ +..
T Consensus 242 Dl~egk~Tlp~i~ale~--------------------------------------a~~~~~~l~~~a~~~l~~l~~~~~~ 283 (299)
T 1rqj_A 242 DQQLGKSTYPALLGLEQ--------------------------------------ARKKARDLIDDARQSLKQLAEQSLD 283 (299)
T ss_dssp HHHHTCCCHHHHHCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHCCCCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 87759853999999998--------------------------------------5999999999999999861223421
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999996037
Q gi|254780755|r 307 KKSLMEVVDFCLQRL 321 (322)
Q Consensus 307 k~~L~~L~~~ii~R~ 321 (322)
++.|..+++|+++|.
T Consensus 284 ~~~L~~l~~~i~~R~ 298 (299)
T 1rqj_A 284 TSALEALADYIIQRN 298 (299)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 899999999998678
No 21
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=0 Score=449.63 Aligned_cols=272 Identities=25% Similarity=0.408 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 999999999998607-7875899999999967982279999999999708985786666557899999998752110112
Q gi|254780755|r 10 KDMEKVNFLILKRIC-SDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDS 88 (322)
Q Consensus 10 ~~l~~v~~~i~~~~~-~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~ 88 (322)
+++..|++.|.+.+. .++|.+.+++.|++.+||||+||.+|+++++++|++.++++++|+++|+||+||||||||||+|
T Consensus 9 ~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~AaavEliH~asLIHDDi~D~~ 88 (295)
T 3ipi_A 9 EEYRYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDLLDQG 88 (295)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999874214876899999998728955187999999999809998999999999999999999977757898
Q ss_pred HHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 20011012101001102343124578888764210243110001234567777775456554213221035789899864
Q gi|254780755|r 89 ALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSK 168 (322)
Q Consensus 89 ~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~K 168 (322)
..|||+||+|.+||++.||++||||++++|..+++.+. .....++++...+++||.+|+.+.. ...++++|++|+.+|
T Consensus 89 ~~RRG~pt~~~~~G~~~Ail~Gd~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~gq~~d~~~~~-~~~~~~~y~~i~~~K 166 (295)
T 3ipi_A 89 LVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGE-KVIQDFGKAGMDMAEGEVLDLKLED-ESFGENDYFKCIYKK 166 (295)
T ss_dssp TSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCH-HHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHH
T ss_pred CCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHCCC-CCCCHHHHHHHHHHH
T ss_conf 55445785477618299999469999999886320251-6799999999999666258874146-678899999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCC
Q ss_conf 33555544321000112222101579999973111689887641123670003840123454213653210011014311
Q gi|254780755|r 169 TAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKR 248 (322)
Q Consensus 169 Ta~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~ 248 (322)
||+||++||.+|++++|++++..+.+++||+++|+||||+||++|++| |+.|.|+++||.|+|++++++...+
T Consensus 167 T~~lf~~a~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~------~~~GkDl~~gk~Tlp~i~~~~~~~~- 239 (295)
T 3ipi_A 167 TASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLE------VVEGKESKFTSETLPHIYMKSTSKE- 239 (295)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHC-------CCHHHHHTTTSCHH-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCCHHHCCCCCHHHHHHHHCCCH-
T ss_conf 999999999999997379999999999999999999999999998548------9878705148723999998760879-
Q ss_pred CCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 00013432036899989999999999974969999999999999999984208999899999999999960
Q gi|254780755|r 249 EKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQ 319 (322)
Q Consensus 249 ~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~ 319 (322)
+ +++++.+.+..+.++|++.|+.||+++.++.|.+|++|+..
T Consensus 240 ----------------~-------------~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~L~~l~d~i~~ 281 (295)
T 3ipi_A 240 ----------------E-------------ALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITV 281 (295)
T ss_dssp ----------------H-------------HHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTG
T ss_pred ----------------H-------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf ----------------9-------------99999999999999999998637898699999999999999
No 22
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=0 Score=453.87 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=239.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHH
Q ss_conf 999999999679822799999999997089----8578666655789999999875211011220011012101001102
Q gi|254780755|r 30 IPDVVKYLIFSGGKRLRPMLTLATALMLEY----RGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQT 105 (322)
Q Consensus 30 l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~----~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~ 105 (322)
+.+++.|-+ .||||+||++|+++++++++ +.+.++.+|+|||++|+||||||||||+|++|||+||+|++||++.
T Consensus 60 ~~~~l~Y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~e~~~~la~~iEllH~asLIhDDI~D~s~~RRG~pt~h~~~G~~~ 138 (368)
T 2her_A 60 YLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSN 138 (368)
T ss_dssp HHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHH
T ss_pred HHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHH
T ss_conf 999973678-9840052899999999838876688899999999999999999998532679998899704654454056
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHH-HHH
Q ss_conf 343124578888764210243-------11000123456777777545655421--32210357898998643355-554
Q gi|254780755|r 106 SVLVGDFLLSQAFCMVIETKS-------QEALEALSLVACTLAEGELRQLSLSK--NLDVTEEDYLHVIKSKTAVL-FSA 175 (322)
Q Consensus 106 Ail~GD~l~~~a~~~l~~~~~-------~~~~~~~~~~~~~l~~Gq~~d~~~~~--~~~~s~~~y~~ii~~KTa~L-f~~ 175 (322)
|||+||+|++.++.++.+..+ .++++.+++++..+++||++|+.+.. +.+.++++|++|+++|||+| |.+
T Consensus 139 AI~~gd~L~~~a~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~t~e~Yl~ii~~KTa~l~f~~ 218 (368)
T 2her_A 139 AINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYM 218 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87579999999999998742356749999999998888778763089988745115688569999999999864168889
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 4321000112--22210157999997311168988764112367000384012345421365321001101431100013
Q gi|254780755|r 176 ALEVSSLIAG--VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFW 253 (322)
Q Consensus 176 ~~~~ga~lag--~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l 253 (322)
|+.+|++++| .+++..+.+.+||.++|+||||+||++|+++ |||.|+||++||+|||+++|++.++++++..+
T Consensus 219 ~~~~g~~lag~~~~~~~~~~l~~~g~~lGiaFQI~DD~lD~~~-----gk~~g~Di~egK~Tlpvi~ale~~~~~~k~~l 293 (368)
T 2her_A 219 PVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKI 293 (368)
T ss_dssp HHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHH
T ss_conf 9999999715420237899999999999999991798752406-----99868377569708999999996999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHCCCC
Q ss_conf 43203689998999999999997496999999999999999998420899989999----9999999960379
Q gi|254780755|r 254 KSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKS----LMEVVDFCLQRLN 322 (322)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~----L~~L~~~ii~R~~ 322 (322)
.+++++ +.+.++++.+.+ +..+.+.+..+...+.+.+.++.+|+...++. |..+++|+++|.+
T Consensus 294 ~~~~~k---~~~~vk~i~~~l---~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~l~~ll~kI~~~l~nr~~ 360 (368)
T 2her_A 294 SENYGK---NSSLVKDCYNLL---KINEHYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSRS 360 (368)
T ss_dssp HHHTTT---CHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHCC---CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 998678---778999999998---0789999999999999999998664300799999999999999998611
No 23
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=0 Score=437.09 Aligned_cols=281 Identities=27% Similarity=0.403 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999860778--7589999999996798227999999999970898--578666655789999999
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRICSD--VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR--GDNHVLLACAIEFIHTAT 78 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~~~--~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~--~~~~~~~a~~iEliH~as 78 (322)
.|..+..+....|++.|.+.+.++ ++.+.++++|.+.+||||+||.|++++++++|++ +++++++|+++|++|+||
T Consensus 7 ~l~~f~~~~~~~i~~~l~~~l~~~~~~~~l~~a~~y~l~~GGKriRp~L~l~~~~~~g~~~~~~~~~~~A~avEllH~as 86 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYS 86 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998751699678999999887179440869999999998099977188999999999999999
Q ss_pred HHHHHH--HCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH-----HHHHHHHH--HHHHHHHHHH
Q ss_conf 875211--01122001101210100110234312457888876421024311000-----12345677--7777545655
Q gi|254780755|r 79 LLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALE-----ALSLVACT--LAEGELRQLS 149 (322)
Q Consensus 79 LiHDDI--~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~-----~~~~~~~~--l~~Gq~~d~~ 149 (322)
|||||| ||+|++|||+||+|++||++.||++||++++.++.++++.+.+.... .+..+... +..||..+..
T Consensus 87 LIHDDI~~~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~ 166 (309)
T 3pde_A 87 LIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQ 166 (309)
T ss_dssp HHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99858050366555577777134416099998888888789999975010137788999999999999999845201110
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 42132210357898998643355554432100011222210157999997311168988764112367000384012345
Q gi|254780755|r 150 LSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDF 229 (322)
Q Consensus 150 ~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl 229 (322)
.. +...++++|+.|++.|||+||++||.+|++++|.+++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||
T Consensus 167 ~~-~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl 245 (309)
T 3pde_A 167 SE-HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDA 245 (309)
T ss_dssp TT-TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------C
T ss_pred HH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
T ss_conf 01-01113999999999888888899999999981661888999998777656678858988762389788699823156
Q ss_pred HHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 42136532100110143110001343203689998999999999997496999999999999999998420899989999
Q gi|254780755|r 230 RNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKS 309 (322)
Q Consensus 230 ~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~ 309 (322)
++||+|||++++++ .+++....+.+++++.|..+|.++.++.
T Consensus 246 ~~gK~Tlp~i~~l~--------------------------------------~a~~~~~~~~~~a~~~l~~~~~~~~~~~ 287 (309)
T 3pde_A 246 DEAKNTYPGKLGLI--------------------------------------GANQALIDTIHSGQAALQGLPTSTQRDD 287 (309)
T ss_dssp TTTSSSHHHHHCHH--------------------------------------HHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HCCCCCHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 72966299999999--------------------------------------9999999999999999985899758999
Q ss_pred HHHHHHH-HHCCCC
Q ss_conf 9999999-960379
Q gi|254780755|r 310 LMEVVDF-CLQRLN 322 (322)
Q Consensus 310 L~~L~~~-ii~R~~ 322 (322)
|..++++ +++|.|
T Consensus 288 L~~~~~~~~~eR~n 301 (309)
T 3pde_A 288 LAAFFSYFDTERVN 301 (309)
T ss_dssp HHGGGGGSCTTTTC
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999986
No 24
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A*
Probab=100.00 E-value=0 Score=435.96 Aligned_cols=280 Identities=26% Similarity=0.434 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999986077875---899999999967982279999999999708985786666557899999998
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRICSDVE---MIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATL 79 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~~~~~---~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asL 79 (322)
.|..+....-++|+..+.+.+....| .+.++++|.+.+||||+||.+++++++++|+++++++.+|+++||+|+|||
T Consensus 2 ~l~~~~~~~~~~id~~l~~~~~~~~~~~~~l~e~~~y~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~aiEllH~asL 81 (304)
T 3lsn_A 2 SLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSL 81 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 86899999999999999986055897357899999988449820599999999999849998999999999999999999
Q ss_pred HHHHHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-----CHHHHHHHHHHHHHHHHH---H-
Q ss_conf 752110--11220011012101001102343124578888764210243110-----001234567777775456---5-
Q gi|254780755|r 80 LHDDVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEA-----LEALSLVACTLAEGELRQ---L- 148 (322)
Q Consensus 80 iHDDI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~-----~~~~~~~~~~l~~Gq~~d---~- 148 (322)
|||||+ |+|++|||+||+|.+||++.||++||+|++.+|.++++...... +..+........+++..+ .
T Consensus 82 iHDDI~~~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (304)
T 3lsn_A 82 VHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAID 161 (304)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96177556777778987775444451999998799999799985042322017999999878999998899998768888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 5421322103578989986433555544321000112-222101579999973111689887641123670003840123
Q gi|254780755|r 149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAG-VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE 227 (322)
Q Consensus 149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag-~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~ 227 (322)
....+...+.++|++|++.|||+||.++|.+|++++| .+++..+.+.+||+++|+||||+||++|++|+++.+|||+|+
T Consensus 162 ~~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~g~~~~~GK~~g~ 241 (304)
T 3lsn_A 162 LGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGA 241 (304)
T ss_dssp HHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHH
T ss_conf 75210245569999999999899999999999998565406799999999999999999999987622896551986767
Q ss_pred HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 45421365321001101431100013432036899989999999999974969999999999999999984208999899
Q gi|254780755|r 228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWK 307 (322)
Q Consensus 228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k 307 (322)
||++||+|||++++++. +++.++++.++|++.+..++. ..
T Consensus 242 Dl~~gK~Tlp~i~al~~--------------------------------------a~~~~~~~~~~a~~~l~~~~~--~~ 281 (304)
T 3lsn_A 242 DIARDKPTYPALLGLAA--------------------------------------AKEYALELRDQALHALRPFDA--AA 281 (304)
T ss_dssp ------CCHHHHHCHHH--------------------------------------HHHHHHHHHHHHHHHTTTSCG--GG
T ss_pred HHHCCCCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCC--CH
T ss_conf 97769767999999998--------------------------------------899999999999987464780--17
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999999960379
Q gi|254780755|r 308 KSLMEVVDFCLQRLN 322 (322)
Q Consensus 308 ~~L~~L~~~ii~R~~ 322 (322)
+.|.+|++|+++|.|
T Consensus 282 ~~L~el~~~i~~Rk~ 296 (304)
T 3lsn_A 282 EPLRELARYIVERRS 296 (304)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999744
No 25
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=432.46 Aligned_cols=274 Identities=27% Similarity=0.401 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998607---787589999999996798227999999999970898578666655789999999875211
Q gi|254780755|r 8 TLKDMEKVNFLILKRIC---SDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV 84 (322)
Q Consensus 8 ~~~~l~~v~~~i~~~~~---~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI 84 (322)
+.....++++.|.+.+. ...+++.++++|.+.+||||+||.|++++++++|++.+.++++|+++|++|+||||||||
T Consensus 13 l~~~~~~~~~~l~~~l~~~~~~~~~l~ea~~y~l~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~asLIHDDi 92 (302)
T 3p8r_A 13 LSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDL 92 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999986278998539999998852880049999999999980998466689999999999999984167
Q ss_pred HC--HHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHH------HHHHHHHHHHHHHC
Q ss_conf 01--1220011012101001102343124578888764210243110001----234567------77777545655421
Q gi|254780755|r 85 VD--DSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEA----LSLVAC------TLAEGELRQLSLSK 152 (322)
Q Consensus 85 ~D--~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~----~~~~~~------~l~~Gq~~d~~~~~ 152 (322)
+| ++++|||+||+|.+||++.|||+||+|++.+++++++.+....... +..... .++.||..+....
T Consensus 93 ~D~d~~~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 171 (302)
T 3p8r_A 93 PAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAE- 171 (302)
T ss_dssp HHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTT-
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 3456321015888610024839999997899988999987336542117889999999999999999999999986223-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 3221035789899864335555443210001122-221015799999731116898876411236700038401234542
Q gi|254780755|r 153 NLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGV-QNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231 (322)
Q Consensus 153 ~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~-~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~e 231 (322)
+..+++++|+.|+..|||+||+++|.+|++++|. +++..+.+.+||+++|+||||+||++|++|+++.+|||.|+|+++
T Consensus 172 ~~~~s~~~y~~~~~~KT~~l~~~~~~~~~~l~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~g~~~~~GK~~g~Dl~~ 251 (302)
T 3p8r_A 172 NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQEL 251 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHC
T ss_conf 67899999999999999899999999888750577567899999988998867889758766028867749973038775
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 13653210011014311000134320368999899999999999749699999999999999999842089998999999
Q gi|254780755|r 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLM 311 (322)
Q Consensus 232 gk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~ 311 (322)
||+|||++++++. +.+..+++.++|+..++.+|... +.|.
T Consensus 252 gK~Tlp~i~a~e~--------------------------------------a~~~~~~~l~~a~~~l~~~~~~~--~~L~ 291 (302)
T 3p8r_A 252 NKSTYPALLGLEG--------------------------------------AQQKAHTLLQEALLALEAIPYNT--EHLE 291 (302)
T ss_dssp -CCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHTTCSSCT--HHHH
T ss_pred CCCHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCCCH--HHHH
T ss_conf 9852999999997--------------------------------------69999999999999887589658--9999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999960379
Q gi|254780755|r 312 EVVDFCLQRLN 322 (322)
Q Consensus 312 ~L~~~ii~R~~ 322 (322)
++++|+++|.|
T Consensus 292 ~l~~~i~~R~~ 302 (302)
T 3p8r_A 292 EFARYVVERKN 302 (302)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987679
No 26
>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8}
Probab=100.00 E-value=0 Score=434.79 Aligned_cols=271 Identities=24% Similarity=0.366 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 9999999999999986077875-89999999996798227999999999970898578666655789999999875211-
Q gi|254780755|r 7 LTLKDMEKVNFLILKRICSDVE-MIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV- 84 (322)
Q Consensus 7 ~~~~~l~~v~~~i~~~~~~~~~-~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI- 84 (322)
-..-.++.|++.|.+.+.+..+ .+.++++|.+..||||+||.||+++++++|++.+.++++|+++|++|+||||||||
T Consensus 10 ~~~~~~~~v~~~l~e~~~~~~~~~~~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~AaaiEllH~asLIHDDI~ 89 (284)
T 2ftz_A 10 HHHMKXEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLP 89 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 33405999999999870568965799999988816998087999999999809887899999999999999999977885
Q ss_pred -HCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHH
Q ss_conf -01122001101210100110234312457888876421024311000123456777777545655421-3221035789
Q gi|254780755|r 85 -VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSK-NLDVTEEDYL 162 (322)
Q Consensus 85 -~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~-~~~~s~~~y~ 162 (322)
||++..|||+||+|++||++.||++||+|++.+|..++..+++..++.++.....++.||..|..+.. ....+++.|.
T Consensus 90 d~D~~~~RRg~pt~h~~~g~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 2ftz_A 90 PIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVE 169 (284)
T ss_dssp TTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 35687566998430421031779997799999987621012451368999999999999999999987510201189999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHH
Q ss_conf 89986433555544321000112222101579999973111689887641123670003840123454213653210011
Q gi|254780755|r 163 HVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAF 242 (322)
Q Consensus 163 ~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al 242 (322)
.++.+|||+||++||.+|++++|.++ +.+..||+++|+||||+||++|++|+++.+|||+|+|+ +|.|||+++++
T Consensus 170 ~~~~~KT~~lf~~~~~~gail~g~~~---~~l~~~g~~lG~aFQI~DDilD~~gd~~~~GK~~g~D~--~k~Tl~~~~~~ 244 (284)
T 2ftz_A 170 RMYAFXTGALFAFCFSAPFILXGXDH---TXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDT--EXVTLVXXVGI 244 (284)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHCCHHHHCCCCCHHHHCCCCCCCC--CCCCHHHHHHH
T ss_conf 99998899999889999999808978---79998750668875210633102589898697968779--98656899999
Q ss_pred HCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 014311000134320368999899999999999749699999999999999999842089998999999999999603
Q gi|254780755|r 243 QRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQR 320 (322)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~L~~~ii~R 320 (322)
+.+++..+.+.++++..++.++..+.++.|.+|++|+++|
T Consensus 245 --------------------------------------~~a~~~~~~~~~~~l~~l~~~~~~~~~~~L~eL~~~i~~R 284 (284)
T 2ftz_A 245 --------------------------------------QXAREMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf --------------------------------------9999999999999999887679878999999999999759
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=0 Score=435.67 Aligned_cols=245 Identities=29% Similarity=0.472 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999998607--7875899999999967982279999999999708985-786666557899999998
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRIC--SDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRG-DNHVLLACAIEFIHTATL 79 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~--~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~-~~~~~~a~~iEliH~asL 79 (322)
.+.+..++.+..|++.|.+.+. ++++.+.+++.|.+.+||||+||.||+++++++|++. +..+++|+++||+|+|||
T Consensus 9 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~~~~y~l~~gGKr~Rp~L~l~~~~~~g~~~~~~~~~~A~avEllH~asL 88 (302)
T 3p8l_A 9 SLTNFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSL 88 (302)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 19999999999999999999873488778999999887089630869999999998399951778999999999999999
Q ss_pred HHHHHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 752110--11220011012101001102343124578888764210243-----110001234567--777775456554
Q gi|254780755|r 80 LHDDVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKS-----QEALEALSLVAC--TLAEGELRQLSL 150 (322)
Q Consensus 80 iHDDI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~-----~~~~~~~~~~~~--~l~~Gq~~d~~~ 150 (322)
|||||+ |+++.|||+||+|.+||++.||++||+|++.++++++.... ..++..++.+.. .++.||..|+..
T Consensus 89 IHDDI~d~D~~~~RRg~pt~~~~~G~~~Ail~GD~l~~~a~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gq~~d~~~ 168 (302)
T 3p8l_A 89 IHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEG 168 (302)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97886135777543568860102488999981148799999999870378179999999999998899999998999870
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 21322103578989986433555544321000112222101579999973111689887641123670003840123454
Q gi|254780755|r 151 SKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFR 230 (322)
Q Consensus 151 ~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~ 230 (322)
. +...++++|++|+++|||+||++||.+|++++|++++..+.+++||+++|+||||+||++|++|+++.+|||+|+|++
T Consensus 169 ~-~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~~~~~~~GK~~g~Dl~ 247 (302)
T 3p8l_A 169 E-KVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEA 247 (302)
T ss_dssp T-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred H-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHH
T ss_conf 0-457989999999997799999999973130048857889999999999888864159878534898785997206988
Q ss_pred HCCCCCCCCHHHHCCCCC
Q ss_conf 213653210011014311
Q gi|254780755|r 231 NGKPTLPVILAFQRGTKR 248 (322)
Q Consensus 231 egk~Tlpii~al~~~~~~ 248 (322)
+||+|||++++++.+.+.
T Consensus 248 ~gK~Tlp~i~~l~~a~~~ 265 (302)
T 3p8l_A 248 LNKSTYPALLGIAGAKDA 265 (302)
T ss_dssp ---CCHHHHHCHHHHHHH
T ss_pred CCCCCHHHHHHHHHCHHH
T ss_conf 599849999999867799
No 28
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=0 Score=435.45 Aligned_cols=261 Identities=23% Similarity=0.329 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999998607787-589999999996798227999999999970898578666655789999999875
Q gi|254780755|r 3 MLEDLTLKDMEKVNFLILKRICSDV-EMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLH 81 (322)
Q Consensus 3 ~l~~~~~~~l~~v~~~i~~~~~~~~-~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiH 81 (322)
.+.++..+..+.|++.|.+.+.+.. +.+.+++.|++ +||||+||.||+++++++|++.+.++++|+++|++|+|||||
T Consensus 10 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~l~~~~~y~~-~gGKr~Rp~L~l~~~~~~g~~~~~~~~~A~aiEllH~asLih 88 (289)
T 2azj_A 10 SIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYIL-KDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLAL 88 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHH-SCCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999999863379756999999786-587648999999999982998889999999999999999972
Q ss_pred HHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 21101122001101210100110234312457888876421024311000123456777777545655421322103578
Q gi|254780755|r 82 DDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDY 161 (322)
Q Consensus 82 DDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y 161 (322)
|||||+|++|||+||+|.+||++.||++||||++.++++++...++.+++.+++++..+++||.+|+. ++++|
T Consensus 89 DDi~D~~~~RRg~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~-------~~~~y 161 (289)
T 2azj_A 89 CDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALRDMY-------DNSDY 161 (289)
T ss_dssp HHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-------TTSCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-------CHHHH
T ss_conf 78778887788965526578958999998999976577765214422589999887777641455216-------68899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC----CCCCCHHHHHHHHCCCCCC
Q ss_conf 989986433555544321000112222101579999973111689887641123670----0038401234542136532
Q gi|254780755|r 162 LHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEV----NEMGKNIGEDFRNGKPTLP 237 (322)
Q Consensus 162 ~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~----~~~GK~~g~Dl~egk~Tlp 237 (322)
++|+++|||+||++||.+|+++++.+ +..+.+.+||.++|+||||+||++|++|++ +.+|||+|+|+++||.|+|
T Consensus 162 ~~~i~~KTg~Lf~~~~~~ga~~~~~~-~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~~~~~gK~~g~Dl~egK~T~p 240 (289)
T 2azj_A 162 IRTIELKTGSLFKLSTVLSAYASKHY-NTKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYYREGKLEEY 240 (289)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHH
T ss_conf 99999998899999987689863881-02268999987767899999998873377222210028862057875863699
Q ss_pred CCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 100110143110001343203689998999999999
Q gi|254780755|r 238 VILAFQRGTKREKNFWKSTINDGKISVENLKKAFII 273 (322)
Q Consensus 238 ii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~l 273 (322)
++++++..+...++.+..... .....+++..+.++
T Consensus 241 ~~~~~~~~~~~~~e~l~~~~~-~~~~~~~i~~l~e~ 275 (289)
T 2azj_A 241 VRSVYLEYKQKYDELISNIPF-QSKYLSEIRSLPEF 275 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTSCC-CGGGHHHHHTHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHC-CCCCHHHHHHHHHH
T ss_conf 999999777999999984330-65318999999999
No 29
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=0 Score=419.82 Aligned_cols=279 Identities=27% Similarity=0.371 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999860---778758999999999679822799999999997089857866665578999999987
Q gi|254780755|r 4 LEDLTLKDMEKVNFLILKRI---CSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLL 80 (322)
Q Consensus 4 l~~~~~~~l~~v~~~i~~~~---~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLi 80 (322)
..+.+.+..++++..+.+.+ ....|.+.+++.|.+.+||||+||.+++++++++|++.+.++.+|+|+|++|+||||
T Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~y~~~~GGKr~Rp~l~l~~~~~~~~~~~~~~~~A~aiEllH~asLI 88 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLI 88 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999987635798478999999887079641999999999998598888999999999999999997
Q ss_pred HHHH--HCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC--------CCCHHHH--HHHHHHHHHHHHHH
Q ss_conf 5211--0112200110121010011023431245788887642102431--------1000123--45677777754565
Q gi|254780755|r 81 HDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ--------EALEALS--LVACTLAEGELRQL 148 (322)
Q Consensus 81 HDDI--~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~--------~~~~~~~--~~~~~l~~Gq~~d~ 148 (322)
|||| ||+|++|||+||+|.+||+..||++||++++.++..+...... .....+. .....+++||..|+
T Consensus 89 HDDI~~mD~s~~RRG~pt~h~~~g~~~Ai~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~~d~ 168 (313)
T 3lom_A 89 HDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDL 168 (313)
T ss_dssp HHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 47740358764456797577886548889875568899988753310122538889999999999730034214404677
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 542132210357898998643355554432-1000112222101579999973111689887641123670003840123
Q gi|254780755|r 149 SLSKNLDVTEEDYLHVIKSKTAVLFSAALE-VSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGE 227 (322)
Q Consensus 149 ~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~-~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~ 227 (322)
.+..+...+.++|++|+++|||+||.++|. +|+++++.+++..+.+.+||+++|+||||+||++|++|+++.+|||+|+
T Consensus 169 ~~~~~~~~~~~~y~~i~~~KT~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~ 248 (313)
T 3lom_A 169 SELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSS 248 (313)
T ss_dssp HTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHCCCCCH
T ss_conf 77740468899999999985377988779999998443227899999999999998802321421024898886998112
Q ss_pred HHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 45421365321001101431100013432036899989999999999974969999999999999999984208999899
Q gi|254780755|r 228 DFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWK 307 (322)
Q Consensus 228 Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k 307 (322)
|+++||+|||++++++.+. +....+.+++.+.++.++.. .
T Consensus 249 Di~egK~T~~~i~~~~~a~--------------------------------------~~~~~~~~~~~~~l~~~~~~--~ 288 (313)
T 3lom_A 249 DQANQKTTFATLFNKQQLE--------------------------------------EEIAVHYQIAMDSLRLFGSK--A 288 (313)
T ss_dssp -----CCCHHHHSCHHHHH--------------------------------------HHHHHHHHHHHHTTTTTGGG--G
T ss_pred HHHCCCCHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHCCCC--H
T ss_conf 7775971699999999879--------------------------------------99999999999987757821--8
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999999960379
Q gi|254780755|r 308 KSLMEVVDFCLQRLN 322 (322)
Q Consensus 308 ~~L~~L~~~ii~R~~ 322 (322)
..|.++++++.+|.|
T Consensus 289 ~~L~el~~~i~~R~n 303 (313)
T 3lom_A 289 AALIELTKQLQNRSN 303 (313)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999997207
No 30
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=0 Score=417.69 Aligned_cols=274 Identities=26% Similarity=0.377 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999860778-75899999999967982279999999999708985786666557899999998752
Q gi|254780755|r 4 LEDLTLKDMEKVNFLILKRICSD-VEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHD 82 (322)
Q Consensus 4 l~~~~~~~l~~v~~~i~~~~~~~-~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHD 82 (322)
+.+.+.+--+.|+..+.+.+... .+.+.++..|.+ +||||+||.||+++++++|++.+.++++|+++|++|+||||||
T Consensus 3 l~~~l~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~asLIHD 81 (297)
T 3m0g_A 3 LSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYAA-QGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVHD 81 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHH-SCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799999999999999999864388088999998474-5751899999999998809698999999999999999999918
Q ss_pred HHH--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHH----HHHHHHHHHHHHHHHHH-
Q ss_conf 110--112200110121010011023431245788887642102431----1000123----45677777754565542-
Q gi|254780755|r 83 DVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQ----EALEALS----LVACTLAEGELRQLSLS- 151 (322)
Q Consensus 83 DI~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~----~~~~~~~----~~~~~l~~Gq~~d~~~~- 151 (322)
||| |+|++|||+||+|.+||++.|||+||++++.+++++++.... ++..... .....++.||..+..+.
T Consensus 82 DI~d~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~ 161 (297)
T 3m0g_A 82 DMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAET 161 (297)
T ss_dssp TSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76468987444899646877085476775117877679998752012088899999999999999999977379888662
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 13221035789899864335555443210001122221015799999731116898876411236700038401234542
Q gi|254780755|r 152 KNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231 (322)
Q Consensus 152 ~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~e 231 (322)
.+.+.++++|++|+.+|||+||.++|.+|++++|.+. +.+..||+++|+||||+||++|++|+++.+|||+|+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~KTa~l~~~~~~~~~~~~~~~~---~~~~~~g~~lG~aFQi~DDlld~~gd~~~~GK~~g~Dl~e 238 (297)
T 3m0g_A 162 AAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADR---GPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEA 238 (297)
T ss_dssp SSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHTTCC-------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHC
T ss_conf 2630789999998799999999999998998749978---9999877888889998889887317876409966559875
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 13653210011014311000134320368999899999999999749699999999999999999842089998999999
Q gi|254780755|r 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLM 311 (322)
Q Consensus 232 gk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~ 311 (322)
||+|||++++++. +++..+++.++|.+.++.+++ ..+.|.
T Consensus 239 gK~T~~~i~al~~--------------------------------------a~~~~~~l~~~a~~~l~~~~~--~~~~L~ 278 (297)
T 3m0g_A 239 HKATFVSLLGLAG--------------------------------------AKSRAADLVAEAEAALAPYGE--AASTLR 278 (297)
T ss_dssp --CCHHHHHCSSH--------------------------------------HHHHHHHHHHHHHHHTGGGGG--GGHHHH
T ss_pred CCCCHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCH--HHHHHH
T ss_conf 9976999999999--------------------------------------999999999999997664773--689999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999996037
Q gi|254780755|r 312 EVVDFCLQRL 321 (322)
Q Consensus 312 ~L~~~ii~R~ 321 (322)
++++|+++|.
T Consensus 279 ~l~~~i~~R~ 288 (297)
T 3m0g_A 279 ACARYVIERD 288 (297)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHC
T ss_conf 9999999970
No 31
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=0 Score=419.80 Aligned_cols=234 Identities=23% Similarity=0.378 Sum_probs=207.4
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHCCCCH
Q ss_conf 607787589999999996798227999999999970898-578666655789999999875211--01122001101210
Q gi|254780755|r 22 RICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR-GDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAAR 98 (322)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~-~~~~~~~a~~iEliH~asLiHDDI--~D~~~~RRg~~t~~ 98 (322)
.+.+.+|.+.++++|++.+||||+||++|++++++++++ .+.++.+|+++||+|+|||||||| ||+|++|||+||+|
T Consensus 19 ~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~A~aiEllH~asLiHDDI~~mD~s~~RRG~pt~h 98 (291)
T 3npk_A 19 KVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLH 98 (291)
T ss_dssp CCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 35566747999999998589853879999999998599736899999999999999999972870346874458987643
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 10011023431245788887642102431100012-------34567777775456554213221035789899864335
Q gi|254780755|r 99 LVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEAL-------SLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAV 171 (322)
Q Consensus 99 ~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~-------~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~ 171 (322)
.+||++.||++||+|++.+|..+++.......... +.....++.||..|+.+..+ ..++++|..|+.+|||+
T Consensus 99 ~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~-~~~~~~y~~i~~~KTa~ 177 (291)
T 3npk_A 99 KSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK-RLSLNELEFLHTHKTAR 177 (291)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf 43206799980729889898887764001468899999999988999999888999987505-78799999999998885
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCH
Q ss_conf 55544321000112222101579999973111689887641123670003840123454213653210011014311000
Q gi|254780755|r 172 LFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKN 251 (322)
Q Consensus 172 Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~ 251 (322)
||++||.+||+++|++++..+.+.+||+++|+||||+||++|++|+++.+|||+|+||++| |||++++++.+.+..++
T Consensus 178 lf~~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~gd~~~~GK~~g~Di~kg--t~~~i~al~~a~~~~~~ 255 (291)
T 3npk_A 178 LIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKN--SFVNLLGLEQAIKTKEN 255 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------C--CHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC--CHHHHHHHHHHHHHHHH
T ss_conf 8989999999984799999999998999888887737998863388888599857636544--19999999973999999
Q ss_pred HHHHHCC
Q ss_conf 1343203
Q gi|254780755|r 252 FWKSTIN 258 (322)
Q Consensus 252 ~l~~~~~ 258 (322)
.+.+...
T Consensus 256 ll~~~~~ 262 (291)
T 3npk_A 256 LLNECEQ 262 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999998
No 32
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A*
Probab=100.00 E-value=0 Score=403.87 Aligned_cols=264 Identities=28% Similarity=0.434 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999860778758-9999999996798227999999999970898578666655789999999875211
Q gi|254780755|r 6 DLTLKDMEKVNFLILKRICSDVEM-IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV 84 (322)
Q Consensus 6 ~~~~~~l~~v~~~i~~~~~~~~~~-l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI 84 (322)
.++.++...|++.|.+.+....|. +.++++|.+.+||||+||.|++++++++|++++.++.+|+++|++|+||||||||
T Consensus 15 s~~~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~GGKrlRp~L~~~~~~~~g~~~~~~~~~a~aiEllH~asLIHDDI 94 (293)
T 2j1p_A 15 SYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDL 94 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999975576785679999998983787528899999999980998788999999999999999988277
Q ss_pred H--CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHH--HHHHHHHHHHHHHHC
Q ss_conf 0--112200110121010011023431245788887642102431100--------0123456--777777545655421
Q gi|254780755|r 85 V--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEAL--------EALSLVA--CTLAEGELRQLSLSK 152 (322)
Q Consensus 85 ~--D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~--------~~~~~~~--~~l~~Gq~~d~~~~~ 152 (322)
+ |+|.+|||+||+|++||++.||++||++++.++.+++...+..+. ..+++.+ ..++.||..++....
T Consensus 95 ~d~D~s~~RRG~pt~h~~~g~~~Ail~GD~l~~~a~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (293)
T 2j1p_A 95 PCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEG 174 (293)
T ss_dssp TTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44678887787265888728404356432899999999876135545789999999999999999999999999887641
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf --322103578989986433555544321000112222101579999973111689887641123670003840123454
Q gi|254780755|r 153 --NLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFR 230 (322)
Q Consensus 153 --~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~GK~~g~Dl~ 230 (322)
..+.++++|..|+.+|||+||+++|.+||+++|++++.++.+++||.++|+||||+||++|++|+
T Consensus 175 ~~~~~~~~~~~~~i~~~KTa~l~~~~~~~gaila~~~~~~~~~l~~~G~~lGiAFQI~DDilD~~~d------------- 241 (293)
T 2j1p_A 175 LDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS------------- 241 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC-------------
T ss_conf 1345678999999999988999999999989772999999999999985700344334044441069-------------
Q ss_pred HCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 21365321001101431100013432036899989999999999974969999999999999999984208999899999
Q gi|254780755|r 231 NGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSL 310 (322)
Q Consensus 231 egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L 310 (322)
+|.|+|.+++++ .++..++++.++|++.|..++ ++.+..|
T Consensus 242 -~k~T~p~l~~l~--------------------------------------~a~~~~~~l~~~a~~~l~~~~-~~~~~~L 281 (293)
T 2j1p_A 242 -SKLTYPKLMGLE--------------------------------------KSREFAEKLNTEARDQLLGFD-SDKVAPL 281 (293)
T ss_dssp --CCCHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHTTTSC-TTTTHHH
T ss_pred -CCHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_conf -722689896499--------------------------------------999999999999999877389-1789999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999960379
Q gi|254780755|r 311 MEVVDFCLQRLN 322 (322)
Q Consensus 311 ~~L~~~ii~R~~ 322 (322)
.+|++|+++|.|
T Consensus 282 ~~l~~~i~~R~~ 293 (293)
T 2j1p_A 282 LALANYIANRQN 293 (293)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999987789
No 33
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori}
Probab=100.00 E-value=0 Score=391.37 Aligned_cols=253 Identities=24% Similarity=0.363 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
Q ss_conf 479999999999999999986---0778758999999999679822799999999997089------8578666655789
Q gi|254780755|r 2 KMLEDLTLKDMEKVNFLILKR---ICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEY------RGDNHVLLACAIE 72 (322)
Q Consensus 2 ~~l~~~~~~~l~~v~~~i~~~---~~~~~~~l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~------~~~~~~~~a~~iE 72 (322)
+++ ....++.+++++.+.+. +.+.+|.+.++++|++.+||||+||.+|++++.++++ +.+.++++|+++|
T Consensus 6 ~~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~l~~~~~~~~~~GGKr~Rp~l~l~~~~al~g~~~~~~~~~~~~~lA~aiE 84 (311)
T 3llw_A 6 PNL-SFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHH-HHHHHHHHHHHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 546-8999999999999997366405778179999999985898513499999999986487645765799999999999
Q ss_pred HHHHHHHHHHHH--HCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-------HHHHHHHHH
Q ss_conf 999999875211--01122001101210100110234312457888876421024311000123-------456777777
Q gi|254780755|r 73 FIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALS-------LVACTLAEG 143 (322)
Q Consensus 73 liH~asLiHDDI--~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~-------~~~~~l~~G 143 (322)
++|+|||||||| ||+|++|||+||+|++||+..||++||++++.++.++....+........ .....+..|
T Consensus 85 LlH~asLIhDDI~~mD~s~~RRG~pt~h~~~g~~~ai~~gd~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILG 164 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999808602466545799876545432289998652888889999873132047899999999999999999889
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 54565542132210357898998643355554432100011222-21015799999731116898876411236700038
Q gi|254780755|r 144 ELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQ-NSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMG 222 (322)
Q Consensus 144 q~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~-~~~~~~l~~fG~~lG~afQI~DD~ld~~g~~~~~G 222 (322)
|..+..+.. ...+++.|..++..||+++|.+++.+|+++++.. ++..+.+++||.++|+||||+||++|++|+++.+|
T Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~Kt~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~gd~~~~G 243 (311)
T 3llw_A 165 QALDCYFEN-TPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESG 243 (311)
T ss_dssp HHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 998874125-7899999999998588999899999999886354378999999999998998973798885348888868
Q ss_pred CHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCC
Q ss_conf 401234542136532100110143110001343203
Q gi|254780755|r 223 KNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTIN 258 (322)
Q Consensus 223 K~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~ 258 (322)
|+.+.| +||+|||++++++++++..++.+.++++
T Consensus 244 K~~~~D--~gK~T~~~i~a~~~a~~~~~~~l~~~~~ 277 (311)
T 3llw_A 244 KTTHLD--SAKNSFVNLLGLERANNYAQTLKTEVLN 277 (311)
T ss_dssp ---------CCSCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 886877--8727799999999728999999999998
No 34
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B*
Probab=100.00 E-value=0 Score=389.45 Aligned_cols=237 Identities=16% Similarity=0.193 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999860778758-99999999967982279999999999708985786666557899999998752110
Q gi|254780755|r 7 LTLKDMEKVNFLILKRICSDVEM-IPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVV 85 (322)
Q Consensus 7 ~~~~~l~~v~~~i~~~~~~~~~~-l~~~~~~~~~~gGKr~Rp~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~ 85 (322)
+...--++|++.|.+.+....|. +.++++|++.+||||+||.||+++++++|++.++++++|+++|++|+||||||||+
T Consensus 4 y~~~i~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~l~~~~~~gg~~~~~l~~AaaiEliH~asLIHDDI~ 83 (274)
T 3kra_B 4 YWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLP 83 (274)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999765768958899999999847886299999999999939799999899999999999999981776
Q ss_pred -CHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC----------CCHHHHHHH--HHHHHHHHHHHHHHC
Q ss_conf -1122001101210100110234312457888876421024311----------000123456--777777545655421
Q gi|254780755|r 86 -DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQE----------ALEALSLVA--CTLAEGELRQLSLSK 152 (322)
Q Consensus 86 -D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~----------~~~~~~~~~--~~l~~Gq~~d~~~~~ 152 (322)
|+++.|||+||+|.+||++.|||+||+|++.+|++++...++. ++..+++++ .-++.||.+|+....
T Consensus 84 ddd~~~RRG~pt~h~~~G~~~AIl~GD~L~~~af~~la~~~~~~~~~~~~~~~~~i~~ls~~~~~~g~~~Gq~~d~~~~~ 163 (274)
T 3kra_B 84 LTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVD 163 (274)
T ss_dssp CSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCT
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 56532248999855564839999999999988999998558841024589999999999987768888712589988406
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---------CC---CCC
Q ss_conf 322103578989986433555544321000112222101579999973111689887641123---------67---000
Q gi|254780755|r 153 NLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYR---------GE---VNE 220 (322)
Q Consensus 153 ~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~~---------g~---~~~ 220 (322)
..++++.|..|+++|||+||++||.+||+++|++++.++.+++||+++|++|||.||..+|. ++ .+.
T Consensus 164 -~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~afQi~DD~l~~~~~~~~~~~ 242 (274)
T 3kra_B 164 -GNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEE 242 (274)
T ss_dssp -TSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHH
T ss_conf -7777899999998645399999999999981939999999999999958873224665350034016630466435998
Q ss_pred CCCHHHHH--HHHCCCCCCCCHHHHC
Q ss_conf 38401234--5421365321001101
Q gi|254780755|r 221 MGKNIGED--FRNGKPTLPVILAFQR 244 (322)
Q Consensus 221 ~GK~~g~D--l~egk~Tlpii~al~~ 244 (322)
+||+.|.| +.+||.|+|++||-.+
T Consensus 243 lgk~~g~d~~l~~~~~t~p~l~a~~~ 268 (274)
T 3kra_B 243 LGGFHGKNAELMSSLVAEPSLYAAHH 268 (274)
T ss_dssp HTTSCSSHHHHTGGGGC---------
T ss_pred HCCCCCCCHHHHCCCHHHHHHHHCCC
T ss_conf 18987861878658232899986065
No 35
>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2
Probab=97.61 E-value=0.00094 Score=41.47 Aligned_cols=140 Identities=12% Similarity=0.036 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 45677777754565542132210357898998643355554432100011222210157999997311168988764112
Q gi|254780755|r 135 LVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDY 214 (322)
Q Consensus 135 ~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~ 214 (322)
.....+..|+. |.... .-.|++++.+-.++-.|....+.+.+-.. .+.+....+....++.++|+|+|+.|=+.|+
T Consensus 115 ~~~~~m~~~m~-d~~~~--~~~t~~dL~~Ycy~VAg~VG~~l~~l~~~-~~~~~~~~~~~~~~a~~lG~alQltNilRD~ 190 (340)
T 1ezf_A 115 DICRRMGIGMA-EFLDK--HVTSEQEWDKYCHYVAGLVGIGLSRLFSA-SEFEDPLVGEDTERANSMGLFLQKTNIIRDY 190 (340)
T ss_dssp HHHHHHHHHHH-HHHTS--CCCSHHHHHHHHHHHTHHHHHHHHHHHHH-HTSSCHHHHHCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHCCHH-HHCCC--CCCCHHHHHHHHHHCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79989725389-87367--67988999999987551699999999567-7765300688999999999999999899833
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 36700038401234542136532100110143110001343203689998999999999997496999999999999999
Q gi|254780755|r 215 RGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKA 294 (322)
Q Consensus 215 ~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A 294 (322)
..|+..|+.-||.-..-+.+-.. .++.. +.. .+.+. . ++......+..|.+.|
T Consensus 191 -----------~eD~~~gR~ylP~e~l~~~g~~~-----~dl~~-~~~-~~~~~---~------~~~~l~~~A~~~~~~a 243 (340)
T 1ezf_A 191 -----------LEDQQGGREFWPQEVWSRYVKKL-----GDFAK-PEN-IDLAV---Q------CLNELITNALHHIPDV 243 (340)
T ss_dssp -----------HHHHHHTCCCSCHHHHTTTCSSG-----GGGGS-GGG-HHHHH---H------HHHHHHHHHHTTHHHH
T ss_pred -----------HHHHHCCCEECCHHHHHHCCCCH-----HHHHC-CCC-CHHHH---H------HHHHHHHHHHHHHHHH
T ss_conf -----------99995896568889998839999-----98738-646-77899---9------9999999999999999
Q ss_pred HHHHHCCCCCH
Q ss_conf 99842089998
Q gi|254780755|r 295 KDSLRCLPDSS 305 (322)
Q Consensus 295 ~~~L~~lp~~~ 305 (322)
.+.+..+|+..
T Consensus 244 ~~~~~~lp~~~ 254 (340)
T 1ezf_A 244 ITYLSRLRNQS 254 (340)
T ss_dssp HHHHHTCCCHH
T ss_pred HHHHHHCCCHH
T ss_conf 99998789214
No 36
>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
Probab=97.43 E-value=0.0062 Score=36.42 Aligned_cols=135 Identities=11% Similarity=0.051 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 45677777754565542132210357898998643355554432100011222210157999997311168988764112
Q gi|254780755|r 135 LVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDY 214 (322)
Q Consensus 135 ~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag~~~~~~~~l~~fG~~lG~afQI~DD~ld~ 214 (322)
+...+++.|...|+.... -.|+++...-.+.-.|+...+.+. ++++.+. +....++.++|+|+|+.|=+.|+
T Consensus 108 ~~~~~li~g~~~Dl~~~~--~~t~~dL~~Y~~~vAg~VG~l~~~---il~~~~~---~~~~~~A~~lG~AlQltNiLRDi 179 (293)
T 2zco_A 108 QSFYNLIDTVYKDQHFTM--FETDAELFGYCYGVAGTVGEVLTP---ILSDHET---HQTYDVARRLGESLQLINILRDV 179 (293)
T ss_dssp HHHHHHHHHHHHGGGCCC--CSSHHHHHHHHHHHTHHHHHHHHH---HHCSSCC---HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHCCCHHHHHHHH---HHCCCCC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689999999998624356--899999999987130219999999---9615220---02799999999999999999715
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 36700038401234542136532100110143110001343203689998999999999997496999999999999999
Q gi|254780755|r 215 RGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKA 294 (322)
Q Consensus 215 ~g~~~~~GK~~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A 294 (322)
+.|+..|++-+|.-..-+..-. ... + .. +..++ .+..+ +.+....++.|..+|
T Consensus 180 -----------~eD~~~gR~YlP~e~l~~~gv~-~~~-l---~~-~~~~~-~~~~~---------~~~~~~~a~~~~~~a 232 (293)
T 2zco_A 180 -----------GEDFENERIYFSKQRLKQYEVD-IAE-V---YQ-NGVNN-HYIDL---------WEYYAAIAEKDFRDV 232 (293)
T ss_dssp -----------HHHHHTTCCCSCHHHHHHTTCC-HHH-H---HH-HCCCH-HHHHH---------HHHHHHHHHHHHHHH
T ss_pred -----------HHHHHCCCEECCHHHHHHCCCC-HHH-H---HC-CCCHH-HHHHH---------HHHHHHHHHHHHHHH
T ss_conf -----------9899779842889999885999-999-8---55-76205-89998---------999999999999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9984208999
Q gi|254780755|r 295 KDSLRCLPDS 304 (322)
Q Consensus 295 ~~~L~~lp~~ 304 (322)
...+..+|..
T Consensus 233 ~~~~~~lp~~ 242 (293)
T 2zco_A 233 MDQIKVFSIE 242 (293)
T ss_dssp HHTGGGSCTT
T ss_pred HHHHHHCCHH
T ss_conf 9868758998
No 37
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=90.85 E-value=0.76 Score=23.59 Aligned_cols=162 Identities=14% Similarity=-0.001 Sum_probs=85.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCC--------CHHHHHHHHHHHHHHHH-
Q ss_conf 999999970898578666655789999999875211011220011012101001--------10234312457888876-
Q gi|254780755|r 49 LTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWG--------NQTSVLVGDFLLSQAFC- 119 (322)
Q Consensus 49 l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G--------~~~Ail~GD~l~~~a~~- 119 (322)
+..+++..+..-....+.+ +..++. ..-+.||..|++..... +.....+- .......++--+..++.
T Consensus 90 ~~~l~a~~~P~a~~e~L~l--~a~~~~-wlF~~DD~~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~pl~~al~d 165 (382)
T 3kb9_A 90 YTDLMAGYYLGAPDEVLQA--IADYSA-WFFVWDDRHDRDIVHGR-AGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFAD 165 (382)
T ss_dssp HHHHHHTTSTTCCHHHHHH--HHHHHH-HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHH--HHHHHH-HHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 9987847189999999999--999999-99999742668777776-8999999999985622666576533499999999
Q ss_pred ---HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHH
Q ss_conf ---4210243110001234567777775456554213-22103578989986433555544-3210--001122221015
Q gi|254780755|r 120 ---MVIETKSQEALEALSLVACTLAEGELRQLSLSKN-LDVTEEDYLHVIKSKTAVLFSAA-LEVS--SLIAGVQNSVRQ 192 (322)
Q Consensus 120 ---~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~-~~~s~~~y~~ii~~KTa~Lf~~~-~~~g--a~lag~~~~~~~ 192 (322)
-+.....+.-...+.+.+.+.+.|...+..++.. .-.+.++|+++-..-+|..+... +..+ ..+. ...-...
T Consensus 166 l~~rl~~~~~~~~~~rf~~~~~~~~~a~~~Ea~~r~~g~vPsl~eYl~~R~~t~g~~~~~~l~e~~~g~~lp-~~~~~~~ 244 (382)
T 3kb9_A 166 SVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELP-DAVRKHP 244 (382)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCC-HHHHTSH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHCC
T ss_conf 999998224999999999999999999999999987699999999999988865578999999998489889-9988183
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 79999973111689887641123
Q gi|254780755|r 193 ALKSYGMNLGIAFQLVDDVLDYR 215 (322)
Q Consensus 193 ~l~~fG~~lG~afQI~DD~ld~~ 215 (322)
.++.+-+..+...-+.||+..+.
T Consensus 245 ~~~~l~~~~~~~~~l~NDi~S~~ 267 (382)
T 3kb9_A 245 AYRRAALLSQEFAAWYNDLCSLP 267 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17899999999999999988988
No 38
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=88.64 E-value=1.1 Score=22.52 Aligned_cols=160 Identities=10% Similarity=0.001 Sum_probs=83.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH--HHCCCCHHHC-----CCHHHHHHHHHHHHHHH---
Q ss_conf 9999999708985786666557899999998752110112200--1101210100-----11023431245788887---
Q gi|254780755|r 49 LTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALR--RGKVAARLVW-----GNQTSVLVGDFLLSQAF--- 118 (322)
Q Consensus 49 l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~R--Rg~~t~~~~~-----G~~~Ail~GD~l~~~a~--- 118 (322)
+..+++..+..-+...+.++ ..++ ....++||..|+.... .........+ |+.. .+.--+..++
T Consensus 50 ~~~~~a~~~P~a~~~~L~l~--a~~~-~w~f~~DD~~D~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~p~~~~~~dl 123 (337)
T 1ps1_A 50 YADLASRFYPHATGADLDLG--VDLM-SWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDGPLP---DTAPPIAHGFADI 123 (337)
T ss_dssp HHHHHHHHCTTCCTHHHHHH--HHHH-HHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTSCCC---TTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHH--HHHH-HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---CCCCHHHHHHHHH
T ss_conf 99999997789999999999--9999-9998842220465656899999999999974358887---6431899999999
Q ss_pred -HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHH
Q ss_conf -6421024311000123456777777545655421-322-10357898998643355554432-1--0001122221015
Q gi|254780755|r 119 -CMVIETKSQEALEALSLVACTLAEGELRQLSLSK-NLD-VTEEDYLHVIKSKTAVLFSAALE-V--SSLIAGVQNSVRQ 192 (322)
Q Consensus 119 -~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~-~~~-~s~~~y~~ii~~KTa~Lf~~~~~-~--ga~lag~~~~~~~ 192 (322)
.-+...-++.....+.+.+.+.+.|...+..++. +.. .|.++|+.+-..-+|..+...+. . |.-+.. ..-...
T Consensus 124 ~~r~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~-~~~~~~ 202 (337)
T 1ps1_A 124 WRRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPH-RVFDSA 202 (337)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCH-HHHTSH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH-HHHHCH
T ss_conf 9999976399999999999999999999999975048889999999999997123689999999986998899-998481
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 79999973111689887641123
Q gi|254780755|r 193 ALKSYGMNLGIAFQLVDDVLDYR 215 (322)
Q Consensus 193 ~l~~fG~~lG~afQI~DD~ld~~ 215 (322)
.+.++-+..+...-+.||+..+.
T Consensus 203 ~~~~l~~~~~~~~~l~NDl~S~~ 225 (337)
T 1ps1_A 203 VMSAMLQIAVDVNLLLNDIASLE 225 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25999999999998988888888
No 39
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=71.74 E-value=4.7 Score=18.75 Aligned_cols=68 Identities=21% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 98578666655789999999875211011220011012101001102343124578888764210243110001234567
Q gi|254780755|r 59 YRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVAC 138 (322)
Q Consensus 59 ~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~ 138 (322)
.+-+...++|+.. |-+.--..|||-|+.. +-+|+.||.|=+..+.++++...+.-...+++++.
T Consensus 41 ~~ipe~aKlAclt--IDTSMrhlD~I~~nn~--------------sk~ILigDlLSAhfYtlLae~~d~~~q~~mS~aIv 104 (147)
T 3aqb_A 41 LNVDENVKCAIVA--IDTSMRMQDFINEDNK--------------DSFVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVS 104 (147)
T ss_dssp CSSCHHHHHHHHH--HHHHHHHGGGCCTTTH--------------HHHHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHH
T ss_pred CCCCHHHHEEEEE--ECCHHHHHHHHCCCCC--------------CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 6895355156688--5035777887624882--------------12244788889999999817576578999999999
Q ss_pred HHHH
Q ss_conf 7777
Q gi|254780755|r 139 TLAE 142 (322)
Q Consensus 139 ~l~~ 142 (322)
++-|
T Consensus 105 ~iNE 108 (147)
T 3aqb_A 105 RINE 108 (147)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9988
No 40
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=58.65 E-value=8.3 Score=17.20 Aligned_cols=128 Identities=16% Similarity=0.030 Sum_probs=63.1
Q ss_pred CCCHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHC--CCH--HHHHHHHHH
Q ss_conf 982279999---9999997089857866665578999999987521101122001101210100--110--234312457
Q gi|254780755|r 41 GGKRLRPML---TLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVW--GNQ--TSVLVGDFL 113 (322)
Q Consensus 41 gGKr~Rp~l---~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~--G~~--~Ail~GD~l 113 (322)
.=||+++.+ +-+++.++..-+.....+.+ +.-....+.||..|+.... ..+.+... |.. .-++- .
T Consensus 59 ~pkrl~~~~~~~~~l~ay~yP~~~~e~l~~ia---~~t~~lf~lDD~~de~~~~--l~~f~~~L~~g~~~~~Pl~~--~- 130 (374)
T 1yyq_A 59 DPKRLQASLQTIVGMVVYSWAKVSKECMADLS---IHYTYTLVLDDSKDDPYPT--MVNYFDDLQAGREQAHPWWA--L- 130 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHH---HHHHHHHHHTTCCSCSHHH--HTTHHHHHHHTCCCSSHHHH--H-
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH---HHHHHHHEECCCCCCCCHH--HHHHHHHHHCCCCCCCHHHH--H-
T ss_conf 88999999998999999857899999999999---9999985034644465277--99999998559999867999--9-
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888764210243110001234567777775456554213221035789899864335555443
Q gi|254780755|r 114 LSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAAL 177 (322)
Q Consensus 114 ~~~a~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~~~~s~~~y~~ii~~KTa~Lf~~~~ 177 (322)
+...+..+...-.+.....+.+...+.++|-+++....+. -.+.++|..+-+.++|.-...++
T Consensus 131 ~~dll~~~~~~~gp~~~~~ii~st~~f~~a~~~E~~n~~~-~p~~~~Y~e~RR~~sG~~~~~al 193 (374)
T 1yyq_A 131 VNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYNFGG-FPGSHDYPQFLRRMNGLGHCVGA 193 (374)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCCCC-CTTCTTHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999997759899999999999999999998984388-99978988999872678899999
No 41
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=58.22 E-value=8.5 Score=17.15 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHH------HHHHHHHH
Q ss_conf 999999999708985786666557899999998752110112200110121010011023431245------78888764
Q gi|254780755|r 47 PMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDF------LLSQAFCM 120 (322)
Q Consensus 47 p~l~~l~~~~~~~~~~~~~~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~------l~~~a~~~ 120 (322)
.-+..+++..+.......+.+ +..++ ....++||+.|....... +.....+ ..++-|+. -+..++.-
T Consensus 58 ~~~~~~aa~~~P~a~~e~L~l--~~~~~-~w~f~~DD~~d~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~ 130 (320)
T 3bny_A 58 AGFSRVTCLYFPKALDDRIHF--ACRLL-TVLFLIDDLLEYMSFEEG-SAYNEKL---IPISRGDVLPDRSIPVEYIIYD 130 (320)
T ss_dssp HCHHHHHHHHCTTSCTTTHHH--HHHHH-HHHHHHHHHHTTSCHHHH-HHHHHHH---HHHHHTSSCCCTTSHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHH--HHHHH-HHHHHHHHHHHCCCHHHH-HHHHHHH---HHHHCCCCCCCCCCHHHHHHHH
T ss_conf 799988888489999999999--99999-999997343431675668-9999999---9875078899977779999999
Q ss_pred HH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21-024311000123456777777545655421-322103578989986433555544-321000112222101579999
Q gi|254780755|r 121 VI-ETKSQEALEALSLVACTLAEGELRQLSLSK-NLDVTEEDYLHVIKSKTAVLFSAA-LEVSSLIAGVQNSVRQALKSY 197 (322)
Q Consensus 121 l~-~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~-~~~~s~~~y~~ii~~KTa~Lf~~~-~~~ga~lag~~~~~~~~l~~f 197 (322)
+. +.. .....+...+.+...+-+.+..++. +.-.+.++|+.+=..-+|..+... +..+.-. ..+++..+.++.+
T Consensus 131 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~psl~eY~~~R~~~~g~~~~~~l~e~~~~~-~l~~~~~~~~~~l 207 (320)
T 3bny_A 131 LWESMR--AHDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGL-KLSPSELQRVREI 207 (320)
T ss_dssp HHHHHH--HHHHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTC-CCCHHHHHHTHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHH
T ss_conf 999999--9759999999999999999999876278989999999998725588999999997579-9988999999999
Q ss_pred HHHCCCHHHHHHHHHCCC
Q ss_conf 973111689887641123
Q gi|254780755|r 198 GMNLGIAFQLVDDVLDYR 215 (322)
Q Consensus 198 G~~lG~afQI~DD~ld~~ 215 (322)
-+..+...=+.||+..+.
T Consensus 208 ~~~~~~~~~l~NDl~S~~ 225 (320)
T 3bny_A 208 DANCSKHLSVVNDIYSYE 225 (320)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999984898999
No 42
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=46.81 E-value=13 Score=16.03 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 2103578989986433555544321000112--222101579999973111689887641123
Q gi|254780755|r 155 DVTEEDYLHVIKSKTAVLFSAALEVSSLIAG--VQNSVRQALKSYGMNLGIAFQLVDDVLDYR 215 (322)
Q Consensus 155 ~~s~~~y~~ii~~KTa~Lf~~~~~~ga~lag--~~~~~~~~l~~fG~~lG~afQI~DD~ld~~ 215 (322)
-.+.++|+.+=..-+|..+..++.. +..| .+++..+.++.+-...+...=+.||+..+.
T Consensus 151 ~ps~~eYl~~R~~~~g~~~~~~l~~--~~~~~~l~~~~~~~~~~l~~~~~~~i~l~NDl~S~~ 211 (300)
T 1di1_A 151 IHELGHYLEYREKDVGKALLSALMR--FSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYD 211 (300)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHH--HHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999885140989999999--984899988898779999999999999873897899
No 43
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=27.85 E-value=26 Score=14.15 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCCCCCHHHHCCCCCCCHHHHH------HCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1234542136532100110143110001343------2036899989999999999974969999999999999999984
Q gi|254780755|r 225 IGEDFRNGKPTLPVILAFQRGTKREKNFWKS------TINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSL 298 (322)
Q Consensus 225 ~g~Dl~egk~Tlpii~al~~~~~~~~~~l~~------~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L 298 (322)
+..=+..|++.+.+=+...+.... .++.+ .+.....+.+++.+.+..+-........++.+....+.+.+.+
T Consensus 356 ~~eal~~GVP~l~~P~~~DQ~~na--~rv~~~lG~G~~l~~~~~t~~~l~~ai~~vL~~~~y~~~~~ra~~l~~~~~~a~ 433 (456)
T 2c1x_A 356 LWESVAGGVPLICRPFFGDQRLNG--RMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAV 433 (456)
T ss_dssp HHHHHHHTCCEEECCCSTTHHHHH--HHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCEEECCCHHHHHHHH--HHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999998599989636422218999--999997083899038983899999999999709589999999999999999870
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 20899989999999999996037
Q gi|254780755|r 299 RCLPDSSWKKSLMEVVDFCLQRL 321 (322)
Q Consensus 299 ~~lp~~~~k~~L~~L~~~ii~R~ 321 (322)
+ |.+.+.+.+..+++|+++..
T Consensus 434 ~--~~gss~~~~~~~ie~v~~~~ 454 (456)
T 2c1x_A 434 G--PKGSSTENFITLVDLVSKPK 454 (456)
T ss_dssp S--TTCHHHHHHHHHHHHHTSCC
T ss_pred C--CCCCHHHHHHHHHHHHHHHC
T ss_conf 5--99878999999999987634
No 44
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 5eat_A*
Probab=22.73 E-value=33 Score=13.56 Aligned_cols=168 Identities=11% Similarity=0.024 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHH---CCCCHHHCCCHHHHHHHHHHHHH--H
Q ss_conf 27999999999970898578-666655789999999875211011220011---01210100110234312457888--8
Q gi|254780755|r 44 RLRPMLTLATALMLEYRGDN-HVLLACAIEFIHTATLLHDDVVDDSALRRG---KVAARLVWGNQTSVLVGDFLLSQ--A 117 (322)
Q Consensus 44 r~Rp~l~~l~~~~~~~~~~~-~~~~a~~iEliH~asLiHDDI~D~~~~RRg---~~t~~~~~G~~~Ail~GD~l~~~--a 117 (322)
|-|+.-|+..+-+.=..|+- .-+.+.+= .+ .-.-|.||+.|.--+-.- -.-+-.+|..+..=...+|+-.. +
T Consensus 266 Rdr~ve~yfw~~~~~feP~~s~~R~~~aK-~~-~l~tviDD~yD~ygt~eEl~~ft~av~rWD~~~~~~lpeymk~~f~~ 343 (550)
T 3m00_A 266 RDRVVECYFWTLGVYFEPQYSQARVMLVK-TI-SMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 343 (550)
T ss_dssp CCCHHHHHHHHHHHCCSGGGHHHHHHHHH-HH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHH
T ss_conf 87889999999872068233889999999-99-99987555423679999999999999723945544075479999999
Q ss_pred ----HH----HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf ----76----4210243110001234567777775456554213-2210357898998643355-554432100011222
Q gi|254780755|r 118 ----FC----MVIETKSQEALEALSLVACTLAEGELRQLSLSKN-LDVTEEDYLHVIKSKTAVL-FSAALEVSSLIAGVQ 187 (322)
Q Consensus 118 ----~~----~l~~~~~~~~~~~~~~~~~~l~~Gq~~d~~~~~~-~~~s~~~y~~ii~~KTa~L-f~~~~~~ga~lag~~ 187 (322)
+. .+.......++.-+.++..+++.+=+.+..|..+ .-.|.++|++....-+|.. +.+.+.+|. +...
T Consensus 344 l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~~~vPt~eEYm~~a~vS~g~~~l~~~~f~~~--g~~~ 421 (550)
T 3m00_A 344 ILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM--KSAT 421 (550)
T ss_dssp HHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC--TTCC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEECCHHHHHHHHHHHHC--CCCC
T ss_conf 99999999999998458113999999999999999999999856999988888413011305999999999727--8776
Q ss_pred HHHH---HHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 2101---579999973111689887641123
Q gi|254780755|r 188 NSVR---QALKSYGMNLGIAFQLVDDVLDYR 215 (322)
Q Consensus 188 ~~~~---~~l~~fG~~lG~afQI~DD~ld~~ 215 (322)
++.. ....++-+..++...+.||+-.+.
T Consensus 422 ~e~~~~~~~~p~i~~~~s~i~RL~NDI~S~k 452 (550)
T 3m00_A 422 EQDFEWLSKNPKILEASVIICRVIDDTATYE 452 (550)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999875023899999999999865512668
No 45
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1
Probab=21.87 E-value=34 Score=13.46 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHCCCHHHHHHHHHHH
Q ss_conf 6655789999999875211011220011012101001102343124578
Q gi|254780755|r 66 LLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLL 114 (322)
Q Consensus 66 ~~a~~iEliH~asLiHDDI~D~~~~RRg~~t~~~~~G~~~Ail~GD~l~ 114 (322)
..+++.|++...- -||||-|++..|- .+|..-++.+-+.-||.+-
T Consensus 11 l~~~a~e~l~e~I-ryd~i~d~DD~~D---aiHe~ad~~VP~yy~diFs 55 (117)
T 1s7z_A 11 VFDHAYEMLKENI-RYDDIRDTDDLHD---AIHMAADNAVPHYYADIFS 55 (117)
T ss_dssp HHHHHHHHHHHHH-HHTTCCCGGGCHH---HHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCCCCCCHHHH---HHHHHHCCCCCCHHHHHHH
T ss_conf 9999999999875-0243356542889---9999841688603466888
No 46
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} PDB: 3hbj_A*
Probab=20.41 E-value=36 Score=13.27 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=52.4
Q ss_pred HHHHHCCCCCCCCHHHHCCCCCCCHHHHH------HCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 34542136532100110143110001343------203689998999999999997496999999999999999998420
Q gi|254780755|r 227 EDFRNGKPTLPVILAFQRGTKREKNFWKS------TINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRC 300 (322)
Q Consensus 227 ~Dl~egk~Tlpii~al~~~~~~~~~~l~~------~~~~~~~~~~~~~~i~~ll~~~gai~~~~~~~~~~~~~A~~~L~~ 300 (322)
.=+..|++.+-+=+...+.... .++.. .+..+..+.+++.+.+..+-........++.+.+..+.++.+.+.
T Consensus 360 EAl~~GvP~v~~P~~~DQ~~na--~rv~~~~G~G~~l~~~~~t~~~l~~av~~vL~d~~~~~yr~~a~~l~~~~~~Av~~ 437 (454)
T 3hbf_A 360 ECIVGGVPMISRPFFGDQGLNT--ILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQ 437 (454)
T ss_dssp HHHHHTCCEEECCCSTTHHHHH--HHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHCCCCEEECCCCCCCHHHH--HHHHHHHCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9998699989467210148999--99999748479703897089999999999966954899999999999999998507
Q ss_pred CCCCHHHHHHHHHHHHHHC
Q ss_conf 8999899999999999960
Q gi|254780755|r 301 LPDSSWKKSLMEVVDFCLQ 319 (322)
Q Consensus 301 lp~~~~k~~L~~L~~~ii~ 319 (322)
.+.+...+..+++++.+
T Consensus 438 --ggss~~~~~~~~~~~~~ 454 (454)
T 3hbf_A 438 --NGTSAMDFTTLIQIVTS 454 (454)
T ss_dssp --TSHHHHHHHHHHHHHTC
T ss_pred --CCCHHHHHHHHHHHHCC
T ss_conf --98589999999998509
Done!