RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3kra
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* Length = 274
Score = 182 bits (462), Expect = 1e-46
Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%)
Query: 28 EMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDD 87
E + + +L F+ L LA ++ + I +H A +H+ +
Sbjct: 26 ETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMXXXXXIHLVHAAAYVHEHLPLT 85
Query: 88 SA-LRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAE---- 142
K A + +G +L GD ++ F ++ + + + + E
Sbjct: 86 DGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRA 145
Query: 143 -------GELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALK 195
L + + + + + +V K K + + +++ G Q L+
Sbjct: 146 GGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLR 205
Query: 196 SYGMNLGI---------AFQLVDDVLDYRGE---VNEMGKNIGED--FRNGKPTLPVILA 241
++G+ G + QL+D+ + + + + E+G G++ + P + A
Sbjct: 206 NFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELALEELGGFHGKNAELMSSLVAEPSLYA 265