RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3llw

>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} Length = 311

 Score =  191 bits (487), Expect = 1e-49
 Identities = 71/297 (23%), Positives = 140/297 (47%), Gaps = 25/297 (8%)

Query: 10  KDMEKVN-FL--ILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALML------EYR 60
            + E+   FL      + S    +      ++ +GGKR RP L LA    L        +
Sbjct: 13  NECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQ 72

Query: 61  GDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAF 118
              +  +A +IE +HT +L+HDD+  +D++ALRR        +   T+VL+GD L + +F
Sbjct: 73  QTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSF 132

Query: 119 CMVIETKSQEALEALSLVACTLAEG------ELRQLSLSKNLDVTEEDYLHVIKSKTAVL 172
            ++     +  +    +   +   G              +N  +  E    + + KTA L
Sbjct: 133 ELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKL 192

Query: 173 FSAALEVSSLIAGVQNS-VRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231
            SA+L +  + +G+++  + + L+++G+ +G+ FQ++DD++D   +  E GK    D  +
Sbjct: 193 ISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--S 250

Query: 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMREN-RALVDTEYRA 287
            K +   +L  +R     +      +ND    ++ LK A+ +++EN  AL++T ++ 
Sbjct: 251 AKNSFVNLLGLERANNYAQTLKTEVLND----LDALKPAYPLLQENLNALLNTLFKG 303