RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3lmd
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} Length = 360
Score = 280 bits (717), Expect = 3e-76
Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 4/313 (1%)
Query: 11 DMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEY-RGDNHVLLAC 69
M +V L+ + S + + D+V +L +GGKR RPM L + E +N + A
Sbjct: 43 AMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAV 102
Query: 70 AIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEA 129
+E H ATL HDDV+D++++RRG +A W N ++L GD LL+ A ++ + + +
Sbjct: 103 VVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT-DT 161
Query: 130 LEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNS 189
+ + L G++R+ ++ D E Y +VI+ KT VL ++A + ++ AG
Sbjct: 162 VAHFAETFGELVTGQMRETVGPRDTD-PIEHYTNVIREKTGVLIASAGYLGAMHAGAAPE 220
Query: 190 VRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKRE 249
ALK++G +G+ FQ+VDD++D E +E GK G D R G TLPV+ A + T
Sbjct: 221 HIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVG 280
Query: 250 KNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKS 309
+ + E + ++ ++ Y Y A L LPDS+ K++
Sbjct: 281 AE-LRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEA 339
Query: 310 LMEVVDFCLQRLN 322
L + F ++R+
Sbjct: 340 LRNLATFTVKRVG 352