RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3npk

>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291
 Score =  180 bits (457), Expect = 4e-46
 Identities = 66/279 (23%), Positives = 126/279 (45%), Gaps = 16/279 (5%)

Query: 1   MKM-LEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEY 59
           M + L++L +  +EK     L ++ S      + +  ++ +GGK  R  L L+     + 
Sbjct: 1   MSLNLKELFIHHLEK----NLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKP 56

Query: 60  RGDNHVL-LACAIEFIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQ 116
              N  L +A A+EFIHT +L+HDD+  +D++  RRG       +   T++LVGD L ++
Sbjct: 57  ELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTE 116

Query: 117 AFCMVIETKSQEALEALSLVACTLAEGELRQL------SLSKNLDVTEEDYLHVIKSKTA 170
           AF ++     ++ ++   +       G    +         ++  ++  +   +   KTA
Sbjct: 117 AFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTA 176

Query: 171 VLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFR 230
            L +AAL++   I  + N     +   G+ LG+ FQ+ DD++D      + GK    D  
Sbjct: 177 RLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIH 236

Query: 231 NGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKK 269
             K +   +L  ++  K ++N       D +   E L +
Sbjct: 237 --KNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQ 273