RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3npk
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291
Score = 180 bits (457), Expect = 4e-46
Identities = 66/279 (23%), Positives = 126/279 (45%), Gaps = 16/279 (5%)
Query: 1 MKM-LEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEY 59
M + L++L + +EK L ++ S + + ++ +GGK R L L+ +
Sbjct: 1 MSLNLKELFIHHLEK----NLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKP 56
Query: 60 RGDNHVL-LACAIEFIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQ 116
N L +A A+EFIHT +L+HDD+ +D++ RRG + T++LVGD L ++
Sbjct: 57 ELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTE 116
Query: 117 AFCMVIETKSQEALEALSLVACTLAEGELRQL------SLSKNLDVTEEDYLHVIKSKTA 170
AF ++ ++ ++ + G + ++ ++ + + KTA
Sbjct: 117 AFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTA 176
Query: 171 VLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFR 230
L +AAL++ I + N + G+ LG+ FQ+ DD++D + GK D
Sbjct: 177 RLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIH 236
Query: 231 NGKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKK 269
K + +L ++ K ++N D + E L +
Sbjct: 237 --KNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQ 273