RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3p8r
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302
Score = 190 bits (484), Expect = 3e-49
Identities = 74/294 (25%), Positives = 141/294 (47%), Gaps = 18/294 (6%)
Query: 1 MKMLEDLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYR 60
++ L ++ ++++ + + + +I + ++Y + GGKR RP L T ML
Sbjct: 10 LEALSSYQQRNNQQLDQWLNRIPFQTLPLI-EAMRYGLLLGGKRARPYLVYITGQMLGCE 68
Query: 61 GDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAF 118
+ A A+E IH +L+HDD+ +DD LRRGK + + T++L GD L + AF
Sbjct: 69 LSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAF 128
Query: 119 CMVIETKSQEALEAL------SLVACTLAEGELRQLSL---SKNLDVTEEDYLHVIKSKT 169
++ E A E +L + A+G +L ++N ++ E+ + ++KT
Sbjct: 129 TILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKT 188
Query: 170 AVLFSAALEVSSLIAGVQN-SVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGED 228
L A+ + +L AG + ++ L Y +G+AFQ+ DD+LD + +GK G D
Sbjct: 189 GALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSD 248
Query: 229 FRNGKPTLPVILAFQRGTKREKNFWK---STINDGKISVENLKKA--FIIMREN 277
K T P +L + ++ + + + E+L++ +++ R+N
Sbjct: 249 QELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYNTEHLEEFARYVVERKN 302