RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3pde

>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309

 Score =  183 bits (464), Expect = 7e-47
 Identities = 77/332 (23%), Positives = 134/332 (40%), Gaps = 51/332 (15%)

Query: 4   LEDLTLKDMEKVNFLILKRICSDVE--MIPDVVKYLIFSGGKRLRPMLTLATALML--EY 59
           L     + +  +N  + + I +D +   +   + Y + +GGKRLRP+LT+AT   L   +
Sbjct: 8   LIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTF 67

Query: 60  RGDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQA 117
             + H     A+E +HT +L+HDD+  +D+ ALRRG+    + +G   + L GD LL+ A
Sbjct: 68  VPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLA 127

Query: 118 FCMVIETKSQEALEALSLVACTLAEGELRQL------SLSKNLDVTEEDYLHVIKSKTAV 171
           F  +  T     ++A  + A   A G    +        S+++++       + K KT  
Sbjct: 128 FQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGA 187

Query: 172 LFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231
           L   A++   ++     +   A   +    G+AFQ+ DD+LD      EMGK   +D   
Sbjct: 188 LLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADE 247

Query: 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYG 291
            K T P  L      +   +                                        
Sbjct: 248 AKNTYPGKLGLIGANQALID--------------------------------------TI 269

Query: 292 QKAKDSLRCLPDSSWKKSLMEVVD-FCLQRLN 322
              + +L+ LP S+ +  L      F  +R+N
Sbjct: 270 HSGQAALQGLPTSTQRDDLAAFFSYFDTERVN 301