HHsearch alignment for GI: 254780757 and conserved domain: PRK00252
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed.
Probab=97.48 E-value=0.0072 Score=41.97 Aligned_cols=173 Identities=25% Similarity=0.304 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC-----------CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 77799999999999986695896116754-----------3332248578987448344016764155788765546677
Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME-----------VGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENP 78 (307)
Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e-----------~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNP 78 (307)
T Consensus 1 ~m~~~eiR~~fl~fF~~k~H~~v~s~~lvp~~DptllftnAGm~~fk~-~f~G~~~p~~~r~~~~QkCiR~nDl---d~V 76 (864)
T PRK00252 1 MMTTAEIRQAFLDFFESKGHTVVPSSSLVPKNDPTLLFTNAGMVQFKD-YFLGLEKPPYPRATTSQKCIRTNDL---ENV 76 (864)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCCCCHH-HHCCCCCCCCCCCCCCCCCEECCCH---HHC
T ss_conf 997799999999999878988807877255899804675036401622-3258878999973454034003648---763
Q ss_pred CC-CCEEEEEEEEECCCCHH------------------------H--------HHHHHHHHHHCCCCCCCCCEEEE-ECC
Q ss_conf 50-01144445575798335------------------------8--------99999999981999621717988-328
Q gi|254780757|r 79 NR-LQHYYQFQVIIKPNPLN------------------------L--------QNLYIESLKAVGIDPLIHDVRFV-EDN 124 (307)
Q Consensus 79 NR-lq~y~QfQVilKPsp~n------------------------i--------q~lYl~SL~~iGid~~~hDIrFv-eDn 124 (307)
T Consensus 77 G~t~rH~TfFEMlGN~SfGdYfK~eai~~awe~lt~~~~l~~~~l~vTv~~~D~e~~~iW~~~~gi~~~-~I~~~~~~dN 155 (864)
T PRK00252 77 GYTARHHTFFEMLGNFSFGDYFKKEAIEFAWELLTSVLGLPKEKLYVTVYEDDDEAYDIWKKEIGVPPE-RIIRIGASDN 155 (864)
T ss_pred CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHCCCCCHH-HEEECCCCCC
T ss_conf 888775254423765665510588999999999875418977995999937878999999870299889-9353675456
Q ss_pred -CCCCHHHHCCCCEEEEEC-------C------------EEEH--HHHHHHHHCCCCCCC---CHHHHHHHHHHHHHHHC
Q ss_conf -887001101232176887-------8------------7414--777899866825775---14567878999999986
Q gi|254780757|r 125 -WESPTLGAWGLGWECWCD-------G------------MEIS--QFTYFQQVCGIECSP---ISGEITYGLERLAMYVQ 179 (307)
Q Consensus 125 -WEsPtLGAwGlGWEvwld-------G------------MEIt--QFTYFQQvGGi~c~p---v~~EiTYGLERiaMylQ 179 (307)
T Consensus 156 fW~mG~~GpcGPcsEI~yD~g~~~~~~~~~~~~~d~~r~lEiwNlVFmQynr~~~g~~~~Lp~k~IDTGmGLERl~~vlQ 235 (864)
T PRK00252 156 FWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDADGNLTPLPKKNIDTGMGLERIAAILQ 235 (864)
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 31148986998765789850652378998877667764566521010154028899744488887446767999999984
Q ss_pred CCCCEEEE
Q ss_conf 99821133
Q gi|254780757|r 180 NVNSVYDI 187 (307)
Q Consensus 180 ~vdnvyDl 187 (307)
T Consensus 236 g~~snYdt 243 (864)
T PRK00252 236 GVHSNYET 243 (864)
T ss_pred CCCCCCCH
T ss_conf 99876020